KEGG   DISEASE: Alzheimer disease
Entry
H00056                      Disease                                
Name
Alzheimer disease;
Dementia due to Alzheimer disease
Description
Alzheimer disease (AD) is a chronic disorder that slowly destroys neurons and causes serious cognitive disability. AD is associated with senile plaques and neurofibrillary tangles (NFTs). Amyloid-beta (Abeta), a major component of senile plaques, has various pathological effects on cell and organelle function. To date genetic studies have revealed four genes that may be linked to autosomal dominant or familial early onset AD (FAD). These four genes include: amyloid precursor protein (APP), presenilin 1 (PS1), presenilin 2 (PS2), and apolipoprotein E (ApoE). All mutations associated with APP and PS proteins can lead to an increase in the production of Abeta peptides, specifically the more amyloidogenic form, Abeta42. It was proposed that Abeta forms Ca2+ permeable pores and binds to and modulates multiple synaptic proteins, including NMDAR, mGluR5, and VGCC, leading to the overfilling of neurons with calcium ions. Consequently, cellular Ca2+ disruptions will lead to neuronal apoptosis, autophagy deficits, mitochondrial abnormality, defective neurotransmission, impaired synaptic plasticity, and neurodegeneration in AD. FAD-linked PS1 mutation downregulates the unfolded protein response and leads to vulnerability to ER stress.
Category
Neurodegenerative disease
Brite
Human diseases in ICD-11 classification [BR:br08403]
 08 Diseases of the nervous system
  Disorders with neurocognitive impairment as a major feature
   8A20  Alzheimer disease
    H00056  Alzheimer disease
Pathway-based classification of diseases [BR:br08402]
 Cellular process
  nt06534  Unfolded protein response
   H00056  Alzheimer disease
  nt06535  Efferocytosis
   H00056  Alzheimer disease
Disease
pathway
hsa05010  Alzheimer disease
Network
nt06460 Alzheimer disease
nt06466 Pathways of neurodegeneration
nt06534 Unfolded protein response
nt06535 Efferocytosis
Gene
(AD1) APP [HSA:351] [KO:K04520]
(AD2) APOE [HSA:348] [KO:K04524]
(AD3) PSEN1 [HSA:5663] [KO:K04505]
(AD4) PSEN2 [HSA:5664] [KO:K04522]
(AD9) ABCA7 [HSA:10347] [KO:K05645]
(AD18) ADAM10 [HSA:102] [KO:K06704]
Drug
Donepezil hydrochloride [DR:D00670]
Rivastigmine [DR:D03822]
Rivastigmine tartrate [DR:D02558]
Galantamine hydrobromide [DR:D02173]
Memantine hydrochloride [DR:D04905]
Aducanumab [DR:D10541]
Lecanemab [DR:D11678]
Donanemab [DR:D11500]
Memantine and donepezil [DR:D11387]
Benzgalantamine gluconate [DR:D12931]
Comment
Disease class: tauopathy
Affected region: hippocampus, cerebral cortex
Microscopic lesion: amyloid plaques, neurofibrillary tangles, Lewy bodies (seen in Lewy body variant)
Other DBs
ICD-11: 8A20
ICD-10: G30
MeSH: D000544
OMIM: 104300 104310 607822 606889 608907 615590
Reference
PMID:19679070 (AD2)
  Authors
Kim J, Basak JM, Holtzman DM
  Title
The role of apolipoprotein E in Alzheimer's disease.
  Journal
Neuron 63:287-303 (2009)
DOI:10.1016/j.neuron.2009.06.026
Reference
  Authors
Kim D, Tsai LH
  Title
Bridging physiology and pathology in AD.
  Journal
Cell 137:997-1000 (2009)
DOI:10.1016/j.cell.2009.05.042
Reference
  Authors
Bertram L, Tanzi RE
  Title
Thirty years of Alzheimer's disease genetics: the implications of systematic meta-analyses.
  Journal
Nat Rev Neurosci 9:768-78 (2008)
DOI:10.1038/nrn2494
Reference
  Authors
Bird TD
  Title
Genetic aspects of Alzheimer disease.
  Journal
Genet Med 10:231-9 (2008)
DOI:10.1097/GIM.0b013e31816b64dc
Reference
  Authors
Thomas P, Fenech M
  Title
A review of genome mutation and Alzheimer's disease.
  Journal
Mutagenesis 22:15-33 (2007)
DOI:10.1093/mutage/gel055
Reference
  Authors
Goedert M, Spillantini MG
  Title
A century of Alzheimer's disease.
  Journal
Science 314:777-81 (2006)
DOI:10.1126/science.1132814
Reference
PMID:16631796 (AD2)
  Authors
Fazekas F, Enzinger C, Ropele S, Schmidt H, Schmidt R, Strasser-Fuchs S
  Title
The impact of our genes: consequences of the apolipoprotein E polymorphism in Alzheimer disease and multiple sclerosis.
  Journal
J Neurol Sci 245:35-9 (2006)
DOI:10.1016/j.jns.2005.08.018
Reference
  Authors
Rocchi A, Pellegrini S, Siciliano G, Murri L.
  Title
Causative and susceptibility genes for Alzheimer's disease: a review.
  Journal
Brain Res Bull 61:1-24 (2003)
DOI:10.1016/S0361-9230(03)00067-4
Reference
PMID:1303291 (AD3)
  Authors
Mullan M, Houlden H, Windelspecht M, Fidani L, Lombardi C, Diaz P, Rossor M, Crook R, Hardy J, Duff K, et al.
  Title
A locus for familial early-onset Alzheimer's disease on the long arm of chromosome 14, proximal to the alpha 1-antichymotrypsin gene.
  Journal
Nat Genet 2:340-2 (1992)
DOI:10.1038/ng1292-340
Reference
PMID:7651536 (AD4)
  Authors
Rogaev EI, Sherrington R, Rogaeva EA, Levesque G, Ikeda M, Liang Y, Chi H, Lin C, Holman K, Tsuda T, et al.
  Title
Familial Alzheimer's disease in kindreds with missense mutations in a gene on chromosome 1 related to the Alzheimer's disease type 3 gene.
  Journal
Nature 376:775-8 (1995)
DOI:10.1038/376775a0
Reference
PMID:26141617 (AD9)
  Authors
Cuyvers E, De Roeck A, Van den Bossche T, Van Cauwenberghe C, Bettens K, Vermeulen S, Mattheijssens M, Peeters K, Engelborghs S, Vandenbulcke M, Vandenberghe R, De Deyn PP, Van Broeckhoven C, Sleegers K
  Title
Mutations in ABCA7 in a Belgian cohort of Alzheimer's disease patients: a targeted resequencing study.
  Journal
Lancet Neurol 14:814-822 (2015)
DOI:10.1016/S1474-4422(15)00133-7
Reference
PMID:19608551 (AD18)
  Authors
Kim M, Suh J, Romano D, Truong MH, Mullin K, Hooli B, Norton D, Tesco G, Elliott K, Wagner SL, Moir RD, Becker KD, Tanzi RE
  Title
Potential late-onset Alzheimer's disease-associated mutations in the ADAM10 gene attenuate {alpha}-secretase activity.
  Journal
Hum Mol Genet 18:3987-96 (2009)
DOI:10.1093/hmg/ddp323
LinkDB

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KEGG   DISEASE: Parkinson disease
Entry
H00057                      Disease                                
Name
Parkinson disease
Description
Parkinson disease (PD) is a progressive neurodegenerative movement disorder that results primarily from the death of dopaminergic (DA) neurons in the substantia nigra pars compacta (SNc). Both environmental factors and mutations in familial PD-linked genes such as SNCA, Parkin, DJ-1, PINK1 and LRRK2 are associated with PD pathogenesis. These pathogenic mutations and environmental factors are known to cause disease due to oxidative stress, intracellular Ca2+ homeostasis impairment, mitochondrial dysfunctions and altered protein handling compromising key roles of DA neuronal function and survival. The demise of DA neurons located in the SNc leads to a drop in the dopaminergic input to the striatum, which is hypothesized to impede movement by inducing hypo and hyper activity in striatal spiny projection neurons (SPNs) of the direct (dSPNs) and indirect (iSPNs) pathways in the basal ganglia, respectively.
Category
Neurodegenerative disease
Brite
Human diseases in ICD-11 classification [BR:br08403]
 08 Diseases of the nervous system
  Movement disorders
   8A00  Parkinsonism
    H00057  Parkinson disease
Pathway-based classification of diseases [BR:br08402]
 Amino acid metabolism
  nt06028  Dopamine and serotonin metabolism
   H00057  Parkinson disease
 Cellular process
  nt06534  Unfolded protein response
   H00057  Parkinson disease
  nt06536  Mitophagy
   H00057  Parkinson disease
  nt06535  Efferocytosis
   H00057  Parkinson disease
Disease
pathway
hsa05012  Parkinson disease
Pathway
hsa04137  Mitophagy - animal
Network
nt06028 Dopamine and serotonin metabolism
nt06463 Parkinson disease
nt06466 Pathways of neurodegeneration
nt06534 Unfolded protein response
nt06535 Efferocytosis
nt06536 Mitophagy
Gene
(PARK1/PARK4) SNCA (duplication, triplication) [HSA:6622] [KO:K04528]
(PARK2) PRKN [HSA:5071] [KO:K04556]
(PARK5) UCHL1 [HSA:7345] [KO:K05611]
(PARK6) PINK1 [HSA:65018] [KO:K05688]
(PARK7) PARK7 [HSA:11315] [KO:K05687]
(PARK8) LRRK2 [HSA:120892] [KO:K08844]
(PARK9) ATP13A2 [HSA:23400] [KO:K13526]
(PARK11) GIGYF2 [HSA:26058] [KO:K18730]
(PARK13) HTRA2 [HSA:27429] [KO:K08669]
(PARK14) PLA2G6 [HSA:8398] [KO:K16343]
(PARK15) FBXO7 [HSA:25793] [KO:K10293]
(PARK17) VPS35 [HSA:55737] [KO:K18468]
(PARK18) EIF4G1 [HSA:1981] [KO:K03260]
(PARK19) DNAJC6 [HSA:9829] [KO:K09526]
(PARK22) CHCHD2 [HSA:51142] [KO:K22758]
(PARK23) VPS13C [HSA:54832] [KO:K19525]
(PARK24) PSAP [HSA:5660] [KO:K12382]
(PARK25) PTPA [HSA:5524] [KO:K17605]
(PARK26) RAB32 [HSA:10981] [KO:K07918]
(IDLDP) NR4A2 [HSA:4929] [KO:K08558]
MAPT [HSA:4137] [KO:K04380]
Drug
Droxidopa [DR:D01277]
Bromocriptine mesylate [DR:D00780]
Apomorphine hydrochloride [DR:D02004]
Levodopa [DR:D00059]
Carbidopa hydrate and levodopa [DR:D00253]
Carbidopa, levodopa and entacapone [DR:D10293]
Amantadine hydrochloride [DR:D00777]
Ropinirole hydrochloride [DR:D00784]
Pramipexole dihydrochloride [DR:D00559]
Rotigotine [DR:D05768]
Selegiline hydrochloride [DR:D00785]
Rasagiline mesylate [DR:D02562]
Safinamide mesylate [DR:D10191]
Tolcapone [DR:D00786]
Entacapone [DR:D00781]
Opicapone [DR:D10825]
Istradefylline [DR:D04641]
Pimavanserin tartrate [DR:D08969]
Carbidopa [DR:D00558]
Comment
Disease class: synucleinopathy
Affected region: substantia nigra, putamen, caudate nucleus, hypothalamus
Microscopic lesion: Lewy bodies
Other DBs
ICD-11: 8A00.0
ICD-10: G20
MeSH: D010300
OMIM: 168600 168601 605543 600116 605909 606324 607060 606693 607688 610297 612953 260300 614203 614251 615528 616710 616840 619491 620482 620923 619911 260540
Reference
  Authors
Hardy J, Lewis P, Revesz T, Lees A, Paisan-Ruiz C
  Title
The genetics of Parkinson's syndromes: a critical review.
  Journal
Curr Opin Genet Dev 19:254-65 (2009)
DOI:10.1016/j.gde.2009.03.008
Reference
PMID:17582365 (PARK2, PARK6, PARK8)
  Authors
Klein C, Lohmann-Hedrich K, Rogaeva E, Schlossmacher MG, Lang AE
  Title
Deciphering the role of heterozygous mutations in genes associated with parkinsonism.
  Journal
Lancet Neurol 6:652-62 (2007)
DOI:10.1016/S1474-4422(07)70174-6
Reference
PMID:17499497 (PARK2, PARK6, PARK7)
  Authors
Dodson MW, Guo M
  Title
Pink1, Parkin, DJ-1 and mitochondrial dysfunction in Parkinson's disease.
  Journal
Curr Opin Neurobiol 17:331-7 (2007)
DOI:10.1016/j.conb.2007.04.010
Reference
PMID:12953260 (PARK7)
  Authors
Abou-Sleiman PM, Healy DG, Quinn N, Lees AJ, Wood NW
  Title
The role of pathogenic DJ-1 mutations in Parkinson's disease.
  Journal
Ann Neurol 54:283-6 (2003)
DOI:10.1002/ana.10675
Reference
PMID:19182805 (PARK9)
  Authors
Gitler AD, Chesi A, Geddie ML, Strathearn KE, Hamamichi S, Hill KJ, Caldwell KA, Caldwell GA, Cooper AA, Rochet JC, Lindquist S
  Title
Alpha-synuclein is part of a diverse and highly conserved interaction network that includes PARK9 and manganese toxicity.
  Journal
Nat Genet 41:308-15 (2009)
DOI:10.1038/ng.300
Reference
PMID:19297401 (PARK1-15)
  Authors
Lesage S, Brice A
  Title
Parkinson's disease: from monogenic forms to genetic susceptibility factors.
  Journal
Hum Mol Genet 18:R48-59 (2009)
DOI:10.1093/hmg/ddp012
Reference
PMID:27090875 (PARK17, PARK18, PARK19)
  Authors
Hernandez DG, Reed X, Singleton AB
  Title
Genetics in Parkinson disease: Mendelian versus non-Mendelian inheritance.
  Journal
J Neurochem 139 Suppl 1:59-74 (2016)
DOI:10.1111/jnc.13593
Reference
PMID:25662902 (PARK22)
  Authors
Funayama M, Ohe K, Amo T, Furuya N, Yamaguchi J, Saiki S, Li Y, Ogaki K, Ando M, Yoshino H, Tomiyama H, Nishioka K, Hasegawa K, Saiki H, Satake W, Mogushi K, Sasaki R, Kokubo Y, Kuzuhara S, Toda T, Mizuno Y, Uchiyama Y, Ohno K, Hattori N
  Title
CHCHD2 mutations in autosomal dominant late-onset Parkinson's disease: a genome-wide linkage and sequencing study.
  Journal
Lancet Neurol 14:274-82 (2015)
DOI:10.1016/S1474-4422(14)70266-2
Reference
PMID:26942284 (PARK23)
  Authors
Lesage S, Drouet V, Majounie E, Deramecourt V, Jacoupy M, Nicolas A, Cormier-Dequaire F, Hassoun SM, Pujol C, Ciura S, Erpapazoglou Z, Usenko T, Maurage CA, Sahbatou M, Liebau S, Ding J, Bilgic B, Emre M, Erginel-Unaltuna N, Guven G, Tison F, Tranchant C, Vidailhet M, Corvol JC, Krack P, Leutenegger AL, Nalls MA, Hernandez DG, Heutink P, Gibbs JR, Hardy J, Wood NW, Gasser T, Durr A, Deleuze JF, Tazir M, Destee A, Lohmann E, Kabashi E, Singleton A, Corti O, Brice A
  Title
Loss of VPS13C Function in Autosomal-Recessive Parkinsonism Causes Mitochondrial Dysfunction and Increases PINK1/Parkin-Dependent Mitophagy.
  Journal
Am J Hum Genet 98:500-13 (2016)
DOI:10.1016/j.ajhg.2016.01.014
Reference
PMID:32201884 (PARK24)
  Authors
Oji Y, Hatano T, Ueno SI, Funayama M, Ishikawa KI, Okuzumi A, Noda S, Sato S, Satake W, Toda T, Li Y, Hino-Takai T, Kakuta S, Tsunemi T, Yoshino H, Nishioka K, Hattori T, Mizutani Y, Mutoh T, Yokochi F, Ichinose Y, Koh K, Shindo K, Takiyama Y, Hamaguchi T, Yamada M, Farrer MJ, Uchiyama Y, Akamatsu W, Wu YR, Matsuda J, Hattori N
  Title
Variants in saposin D domain of prosaposin gene linked to Parkinson's disease.
  Journal
Brain 143:1190-1205 (2020)
DOI:10.1093/brain/awaa064
Reference
PMID:36073231 (PARK25)
  Authors
Fevga C, Tesson C, Carreras Mascaro A, Courtin T, van Coller R, Sakka S, Ferraro F, Farhat N, Bardien S, Damak M, Carr J, Ferrien M, Boumeester V, Hundscheid J, Grillenzoni N, Kessissoglou IA, Kuipers DJS, Quadri M, Corvol JC, Mhiri C, Hassan BA, Breedveld GJ, Lesage S, Mandemakers W, Brice A, Bonifati V
  Title
PTPA variants and impaired PP2A activity in early-onset parkinsonism with intellectual disability.
  Journal
Brain 146:1496-1510 (2023)
DOI:10.1093/brain/awac326
Reference
PMID:38614108 (PARK26)
  Authors
Gustavsson EK, Follett J, Trinh J, Barodia SK, Real R, Liu Z, Grant-Peters M, Fox JD, Appel-Cresswell S, Stoessl AJ, Rajput A, Rajput AH, Auer R, Tilney R, Sturm M, Haack TB, Lesage S, Tesson C, Brice A, Vilarino-Guell C, Ryten M, Goldberg MS, West AB, Hu MT, Morris HR, Sharma M, Gan-Or Z, Samanci B, Lis P, Perinan MT, Amouri R, Ben Sassi S, Hentati F, Tonelli F, Alessi DR, Farrer MJ
  Title
RAB32 Ser71Arg in autosomal dominant Parkinson's disease: linkage, association, and functional analyses.
  Journal
Lancet Neurol 23:603-614 (2024)
DOI:10.1016/S1474-4422(24)00121-2
Reference
PMID:31428396 (IDLDP)
  Authors
Ramos LLP, Monteiro FP, Sampaio LPB, Costa LA, Ribeiro MDO, Freitas EL, Kitajima JP, Kok F
  Title
Heterozygous loss of function of NR4A2 is associated with intellectual deficiency, rolandic epilepsy, and language impairment.
  Journal
Clin Case Rep 7:1582-1584 (2019)
DOI:10.1002/ccr3.2260
Reference
PMID:11220749 (MAPT)
  Authors
Pastor P, Pastor E, Carnero C, Vela R, Garcia T, Amer G, Tolosa E, Oliva R
  Title
Familial atypical progressive supranuclear palsy associated with homozigosity for the delN296 mutation in the tau gene.
  Journal
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