KEGG   PATHWAY: ccae04120
Entry
ccae04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Cyanistes caeruleus (blue tit)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
ccae04120  Ubiquitin mediated proteolysis
ccae04120

Other DBs
GO: 0016567
Organism
Cyanistes caeruleus (blue tit) [GN:ccae]
Gene
111922113  ELOC; elongin-C [KO:K03872]
111922388  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
111922441  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
111922703  CDC16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
111922714  CUL4A; cullin-4A isoform X1 [KO:K10609]
111922807  MID1; E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
111923184  UBE2H; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
111923475  [KO:K20217] [EC:2.3.2.23]
111923476  [KO:K20217] [EC:2.3.2.23]
111923644  CUL1; cullin-1 isoform X1 [KO:K03347]
111923924  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
111924081  CUL2; cullin-2 isoform X1 [KO:K03870]
111924109  CUL5; cullin-5 [KO:K10612]
111924350  BIRC2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
111924488  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
111924578  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
111924643  UBE2W; ubiquitin-conjugating enzyme E2 W isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
111925392  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
111925467  UBE3C; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
111925731  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
111926401  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
111926618  ANAPC1; anaphase-promoting complex subunit 1 [KO:K03348]
111926627  FANCL; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
111926948  PRKN; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
111927090  BIRC6; baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
111927742  UBE2D3; ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
111927799  UBA6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
111927825  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
111928088  UBE2K; ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
111928135  ANAPC4; anaphase-promoting complex subunit 4 [KO:K03351]
111928646  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
111928666  CUL4B; cullin-4B [KO:K10609]
111928676  XIAP; E3 ubiquitin-protein ligase XIAP isoform X1 [KO:K04725] [EC:2.3.2.27]
111928752  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
111928785  [KO:K10614] [EC:2.3.2.26]
111928831  ANAPC10; anaphase-promoting complex subunit 10 [KO:K03357]
111928985  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
111929124  UBOX5; RING finger protein 37 [KO:K10600]
111930105  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
111930172  DDB2; LOW QUALITY PROTEIN: DNA damage-binding protein 2 [KO:K10140]
111930399  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
111930604  DDB1; DNA damage-binding protein 1 [KO:K10610]
111931254  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
111931461  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
111931509  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
111931550  RHOBTB1; rho-related BTB domain-containing protein 1 [KO:K07868]
111931865  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
111931880  [KO:K10099]
111932033  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
111932581  COP1; E3 ubiquitin-protein ligase RFWD2 isoform X1 [KO:K10143] [EC:2.3.2.27]
111932718  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
111933152  CDC20; cell division cycle protein 20 homolog [KO:K03363]
111933525  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
111933553  CUL3; cullin-3 [KO:K03869]
111933641  AIRE; autoimmune regulator [KO:K10603]
111933690  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
111933737  UBE2G2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
111933958  PIAS1; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
111934152  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
111934221  HERC1; LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC1 [KO:K10594] [EC:2.3.2.26]
111934242  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
111934381  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
111934630  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
111934633  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
111934974  UBA3; NEDD8-activating enzyme E1 catalytic subunit [KO:K10686] [EC:6.2.1.64]
111935274  [KO:K03871]
111935423  CDC23; cell division cycle protein 23 homolog isoform X1 [KO:K03355]
111935605  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
111935606  UBE2B; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
111935686  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
111935717  UBE2D2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
111935866  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
111935881  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
111935941  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
111936222  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
111936385  ANAPC5; anaphase-promoting complex subunit 5 [KO:K03352]
111936448  UBE3B; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
111936527  PPIL2; peptidyl-prolyl cis-trans isomerase-like 2 [KO:K10598] [EC:5.2.1.8]
111936539  UBE2L3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
111936708  ANAPC7; anaphase-promoting complex subunit 7 [KO:K03354]
111936764  FBXW8; F-box/WD repeat-containing protein 8 [KO:K10264]
111936916  ANAPC2; anaphase-promoting complex subunit 2 isoform X1 [KO:K03349]
111936940  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
111937274  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme [KO:K10581] [EC:2.3.2.24]
111937422  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
111937481  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
111937670  UBE2G1; ubiquitin-conjugating enzyme E2 G1 isoform X1 [KO:K10575] [EC:2.3.2.23]
111937797  UBB; polyubiquitin-B isoform X1 [KO:K08770]
111937824  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
111938085  BIRC7; baculoviral IAP repeat-containing protein 7 isoform X1 [KO:K16061]
111938382  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
111938493  UBE4B; ubiquitin conjugation factor E4 B [KO:K10597] [EC:2.3.2.27]
111938663  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
111938817  RHOBTB2; rho-related BTB domain-containing protein 2 [KO:K07868]
111939214  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
111939301  CBL; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
111940034  CDC27; cell division cycle protein 27 homolog [KO:K03350]
111940108  BRCA1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
111940136  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
111940265  [KO:K22517] [EC:2.3.2.27]
111940281  [KO:K22517] [EC:2.3.2.27]
111940305  CDC34; ubiquitin-conjugating enzyme E2 R1 isoform X1 [KO:K02207] [EC:2.3.2.23]
111940341  FZR1; fizzy-related protein homolog [KO:K03364]
111940976  SKP2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
111941075  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
111941096  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
111941142  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
111941445  MAP3K1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
111941495  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
111941500  FBXO4; F-box only protein 4 isoform X1 [KO:K10291]
111942177  PIAS4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
111942976  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
111943188  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
111943507  [KO:K25228]
111943701  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
111944324  [KO:K10260]
111944577  [KO:K10595] [EC:2.3.2.26]
111944867  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
111945839  ELOB; elongin-B [KO:K03873]
111945962  [KO:K03178] [EC:6.2.1.45]
111946044  DET1; DET1 homolog isoform X1 [KO:K10571]
111946057  UBA2; SUMO-activating enzyme subunit 2 isoform X1 [KO:K10685] [EC:6.2.1.45]
111946090  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
ccae03050  Proteasome
KO pathway
ko04120   

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