KEGG   PATHWAY: char03440
Entry
char03440                   Pathway                                
Name
Homologous recombination - Clupea harengus (Atlantic herring)
Description
Homologous recombination (HR) is essential for the accurate repair of DNA double-strand breaks (DSBs), potentially lethal lesions. HR takes place in the late S-G2 phase of the cell cycle and involves the generation of a single-stranded region of DNA, followed by strand invasion, formation of a Holliday junction, DNA synthesis using the intact strand as a template, branch migration and resolution. It is investigated that RecA/Rad51 family proteins play a central role. The breast cancer susceptibility protein Brca2 and the RecQ helicase BLM (Bloom syndrome mutated) are tumor suppressors that maintain genome integrity, at least in part, through HR.
Class
Genetic Information Processing; Replication and repair
Pathway map
char03440  Homologous recombination
char03440

Other DBs
GO: 0000724
Organism
Clupea harengus (Atlantic herring) [GN:char]
Gene
105888547  babam2; BRISC and BRCA1-A complex member 2 [KO:K12173]
105889310  xrcc2; DNA repair protein XRCC2 [KO:K10879]
105889378  topbp1; DNA topoisomerase 2-binding protein 1 [KO:K10728]
105889790  rad51b; DNA repair protein RAD51 homolog 2 [KO:K10869]
105889998  pold2; DNA polymerase delta subunit 2 [KO:K02328]
105890039  top3b; DNA topoisomerase 3-beta-1 [KO:K03165] [EC:5.6.2.1]
105891958  nbn; nibrin [KO:K10867]
105893135  pold3; DNA polymerase delta subunit 3 isoform X2 [KO:K03504]
105894959  pold1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
105895147  rad54l; DNA repair and recombination protein RAD54-like [KO:K10875] [EC:5.6.2.-]
105895341  rad51d; DNA repair protein RAD51 homolog 4 [KO:K10871]
105895465  mus81; crossover junction endonuclease MUS81 isoform X1 [KO:K08991] [EC:3.1.22.-]
105895600  rad52; DNA repair protein RAD52 homolog isoform X1 [KO:K10873]
105896776  brcc3; lys-63-specific deubiquitinase BRCC36 [KO:K11864] [EC:3.4.19.-]
105897148  brip1; Fanconi anemia group J protein isoform X1 [KO:K15362] [EC:5.6.2.3]
105897738  xrcc3; DNA repair protein XRCC3 [KO:K10880]
105897825  rad54b; DNA repair and recombination protein RAD54B [KO:K10877] [EC:5.6.2.-]
105898220  rpa1; replication protein A 70 kDa DNA-binding subunit isoform X1 [KO:K07466]
105899457  rad51; DNA repair protein RAD51 homolog 1 [KO:K04482]
105899805  brca2; breast cancer type 2 susceptibility protein isoform X1 [KO:K08775]
105900072  [KO:K19528]
105902603  ssbp1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
105903626  [KO:K10739]
105904927  sem1; 26S proteasome complex subunit SEM1 [KO:K10881]
105905552  blm; Bloom syndrome protein homolog [KO:K10901] [EC:5.6.2.4]
105907913  bard1; BRCA1-associated RING domain protein 1 isoform X1 [KO:K10683]
105908517  pold4; DNA polymerase delta subunit 4 isoform X2 [KO:K03505]
105909168  rad50; DNA repair protein RAD50 [KO:K10866] [EC:3.6.-.-]
105909670  atm; serine-protein kinase ATM [KO:K04728] [EC:2.7.11.1]
105909785  [KO:K10870]
105910112  rpa2; replication protein A 32 kDa subunit [KO:K10739]
105910867  babam1; BRISC and BRCA1-A complex member 1 [KO:K20776]
105912620  rpa3; replication protein A 14 kDa subunit [KO:K10740]
105913448  sycp3; synaptonemal complex protein 3 [KO:K19528]
122129265  top3a; DNA topoisomerase 3-alpha [KO:K03165] [EC:5.6.2.1]
122129803  [KO:K10870]
Reference
  Authors
Maloisel L, Fabre F, Gangloff S.
  Title
DNA polymerase delta is preferentially recruited during homologous recombination to promote heteroduplex DNA extension.
  Journal
Mol Cell Biol 28:1373-82 (2008)
DOI:10.1128/MCB.01651-07
Reference
  Authors
Haruta-Takahashi N, Iwasaki H.
  Title
[Recombination mediators]
  Journal
Seikagaku 79:449-53 (2007)
Reference
  Authors
Ouyang KJ, Woo LL, Ellis NA.
  Title
Homologous recombination and maintenance of genome integrity: Cancer and aging through the prism of human RecQ helicases.
  Journal
Mech Ageing Dev 129:425-40 (2008)
DOI:10.1016/j.mad.2008.03.003
Reference
  Authors
Kawabata M, Kawabata T, Nishibori M.
  Title
Role of recA/RAD51 family proteins in mammals.
  Journal
Acta Med Okayama 59:1-9 (2005)
DOI:10.18926/AMO/31987
Reference
  Authors
Prado F, Cortes-Ledesma F, Huertas P, Aguilera A.
  Title
Mitotic recombination in Saccharomyces cerevisiae.
  Journal
Curr Genet 42:185-98 (2003)
DOI:10.1007/s00294-002-0346-3
Reference
  Authors
Heyer WD, Li X, Rolfsmeier M, Zhang XP.
  Title
Rad54: the Swiss Army knife of homologous recombination?
  Journal
Nucleic Acids Res 34:4115-25 (2006)
DOI:10.1093/nar/gkl481
Reference
  Authors
Michel B, Boubakri H, Baharoglu Z, LeMasson M, Lestini R.
  Title
Recombination proteins and rescue of arrested replication forks.
  Journal
DNA Repair (Amst) 6:967-80 (2007)
DOI:10.1016/j.dnarep.2007.02.016
KO pathway
ko03440   

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