KEGG   PATHWAY: cimi04120
Entry
cimi04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Cebus imitator (Panamanian white-faced capuchin)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
cimi04120  Ubiquitin mediated proteolysis
cimi04120

Other DBs
GO: 0016567
Organism
Cebus imitator (Panamanian white-faced capuchin) [GN:cimi]
Gene
108281220  ANAPC1; anaphase-promoting complex subunit 1 [KO:K03348]
108281831  [KO:K04725] [EC:2.3.2.27]
108282363  [KO:K02927]
108282537  [KO:K10687] [EC:2.3.2.34]
108282623  [KO:K02927]
108282757  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
108282907  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 isoform X1 [KO:K04553] [EC:2.3.2.23]
108283060  ERCC8; DNA excision repair protein ERCC-8 isoform X2 [KO:K10570]
108283281  [KO:K02977]
108283686  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
108283730  [KO:K10686] [EC:6.2.1.64]
108283838  SAE1; SUMO-activating enzyme subunit 1 isoform X1 [KO:K10684] [EC:6.2.1.45]
108284262  CDC23; cell division cycle protein 23 homolog isoform X1 [KO:K03355]
108284353  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
108284383  UBA7; ubiquitin-like modifier-activating enzyme 7 isoform X1 [KO:K10698] [EC:6.2.1.45]
108284445  CUL4A; cullin-4A [KO:K10609]
108284560  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
108284664  VHL; von Hippel-Lindau disease tumor suppressor [KO:K03871]
108285114  [KO:K02977]
108285318  CBLC; E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
108285592  [KO:K10580] [EC:2.3.2.23]
108285616  CUL1; cullin-1 [KO:K03347]
108285677  UBE4B; ubiquitin conjugation factor E4 B [KO:K10597] [EC:2.3.2.27]
108285931  [KO:K10573] [EC:2.3.2.23]
108286341  FBXO2; F-box only protein 2 [KO:K10099]
108286427  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
108286478  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
108286759  UBOX5; RING finger protein 37 isoform X1 [KO:K10600]
108287253  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
108287526  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
108287608  DET1; DET1 homolog isoform X1 [KO:K10571]
108288015  UBE2J1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
108288059  [KO:K03872]
108288455  PIAS4; E3 SUMO-protein ligase PIAS4 isoform X1 [KO:K16065] [EC:2.3.2.27]
108288474  FZR1; fizzy-related protein homolog isoform X1 [KO:K03364]
108288910  HERC1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
108289143  HERC2; E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
108289249  UBE2D3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
108289781  BRCA1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
108289983  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
108290120  [KO:K25228]
108290174  [KO:K25228]
108290188  MID1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
108290397  [KO:K02977]
108290508  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
108290876  STUB1; E3 ubiquitin-protein ligase CHIP isoform X1 [KO:K09561] [EC:2.3.2.27]
108290898  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
108290962  ELOB; elongin-B [KO:K03873]
108291053  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
108291120  ITCH; E3 ubiquitin-protein ligase Itchy homolog [KO:K05632] [EC:2.3.2.26]
108291730  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
108291842  [KO:K20217] [EC:2.3.2.23]
108292298  [KO:K02927]
108292452  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
108292616  PIAS1; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
108292687  HERC4; probable E3 ubiquitin-protein ligase HERC4 [KO:K10615] [EC:2.3.2.26]
108293407  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
108293510  [KO:K03872]
108293674  PIAS3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
108293793  UBE2D4; ubiquitin-conjugating enzyme E2 D4 isoform X1 [KO:K06689] [EC:2.3.2.23]
108294002  BIRC7; baculoviral IAP repeat-containing protein 7 isoform X2 [KO:K16061]
108294444  CUL4B; cullin-4B isoform X1 [KO:K10609]
108294521  [KO:K04551]
108294526  KLHL13; kelch-like protein 13 isoform X2 [KO:K10447]
108294639  UBA6; ubiquitin-like modifier-activating enzyme 6 isoform X1 [KO:K10699] [EC:6.2.1.45]
108295031  [KO:K10580] [EC:2.3.2.23]
108295435  HUWE1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
108295522  UBA1; ubiquitin-like modifier-activating enzyme 1 isoform X2 [KO:K03178] [EC:6.2.1.45]
108295562  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
108295887  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
108296042  ANAPC4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
108296179  KLHL9; kelch-like protein 9 [KO:K10447]
108296196  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
108296206  UBE2L3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
108296311  CDC16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
108296865  UBE3C; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
108297014  [KO:K03873]
108297191  DDB1; DNA damage-binding protein 1 isoform X2 [KO:K10610]
108297494  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
108297524  UBE2W; ubiquitin-conjugating enzyme E2 W isoform X2 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
108298431  [KO:K03178] [EC:6.2.1.45]
108298562  [KO:K20217] [EC:2.3.2.23]
108298815  [KO:K10582] [EC:2.3.2.23]
108298877  [KO:K03178] [EC:6.2.1.45]
108299046  [KO:K02977]
108299383  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
108299476  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
108299555  ELOC; elongin-C isoform X1 [KO:K03872]
108299868  [KO:K03363]
108299945  [KO:K20217] [EC:2.3.2.23]
108299947  UBE2E1; ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
108300229  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
108300593  [KO:K03094]
108300598  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
108300640  CBL; E3 ubiquitin-protein ligase CBL isoform X2 [KO:K04707] [EC:2.3.2.27]
108300819  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
108300927  [KO:K03094]
108301646  [KO:K03873]
108301657  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
108301748  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
108302558  [KO:K03873]
108302804  [KO:K06688] [EC:2.3.2.23]
108303203  [KO:K04552] [EC:2.3.2.23]
108303432  UBE2K; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
108303555  [KO:K10611]
108303929  [KO:K10687] [EC:2.3.2.34]
108304028  [KO:K04552] [EC:2.3.2.23]
108304129  [KO:K03873]
108304559  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
108304629  [KO:K02927]
108304654  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
108304713  CUL3; cullin-3 isoform X1 [KO:K03869]
108304724  TRIP12; E3 ubiquitin-protein ligase TRIP12 [KO:K10590] [EC:2.3.2.26]
108304850  DDB2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
108305033  FBXW8; F-box/WD repeat-containing protein 8 [KO:K10264]
108305131  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
108305343  COP1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
108305407  [KO:K02977]
108305452  [KO:K10687] [EC:2.3.2.34]
108305494  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
108305514  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
108305537  [KO:K02977]
108305750  TRAF6; TNF receptor-associated factor 6 isoform X1 [KO:K03175] [EC:2.3.2.27]
108305841  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
108305873  [KO:K03872]
108306034  PRPF19; pre-mRNA-processing factor 19 isoform X1 [KO:K10599] [EC:2.3.2.27]
108306336  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
108306503  [KO:K02977]
108307142  UBE2B; ubiquitin-conjugating enzyme E2 B isoform X1 [KO:K10574] [EC:2.3.2.23]
108307146  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
108307155  [KO:K06688] [EC:2.3.2.23]
108307257  UBE2H; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
108307354  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
108307522  ANAPC15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
108307639  BIRC3; baculoviral IAP repeat-containing protein 3 isoform X1 [KO:K16060]
108307699  [KO:K10291]
108308054  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
108308675  ANAPC10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
108308810  [KO:K03872]
108308820  BIRC6; baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
108308857  [KO:K10580] [EC:2.3.2.23]
108309183  CUL2; cullin-2 [KO:K03870]
108309463  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X1 [KO:K10581] [EC:2.3.2.24]
108310071  UBE2D2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
108310251  SYVN1; E3 ubiquitin-protein ligase synoviolin isoform X1 [KO:K10601] [EC:2.3.2.27]
108310303  PRKN; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
108310387  [KO:K10611]
108310435  UBE2L5; ubiquitin-conjugating enzyme E2 L5 [KO:K04552] [EC:2.3.2.23]
108310623  UBE2F; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
108310759  [KO:K10580] [EC:2.3.2.23]
108311147  AIRE; autoimmune regulator [KO:K10603]
108311279  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
108311779  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
108311790  [KO:K10577]
108312030  TRIM37; E3 ubiquitin-protein ligase TRIM37 [KO:K10608] [EC:2.3.2.27]
108312172  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
108312262  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
108312644  [KO:K12456]
108312668  [KO:K03094]
108313031  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
108313225  UBE3B; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
108313235  UBE2U; ubiquitin-conjugating enzyme E2 U [KO:K10584] [EC:2.3.2.23]
108313283  CDC20; cell division cycle protein 20 homolog [KO:K03363]
108313418  [KO:K10580] [EC:2.3.2.23]
108313520  ANAPC7; anaphase-promoting complex subunit 7 isoform X1 [KO:K03354]
108313560  [KO:K03094]
108313740  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
108313770  RHOBTB1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
108313818  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
108313921  UBE2J2; ubiquitin-conjugating enzyme E2 J2 isoform X1 [KO:K04554] [EC:2.3.2.23]
108314065  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
108314143  [KO:K25228]
108314185  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
108314471  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
108314477  [KO:K10587] [EC:2.3.2.26]
108314801  [KO:K04506] [EC:2.3.2.27]
108315126  ANAPC5; anaphase-promoting complex subunit 5 isoform X1 [KO:K03352]
108315419  BIRC2; baculoviral IAP repeat-containing protein 2 isoform X1 [KO:K16060]
108315595  FANCL; E3 ubiquitin-protein ligase FANCL isoform X3 [KO:K10606] [EC:2.3.2.27]
108315619  [KO:K03872]
108315654  HERC3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
108315963  [KO:K02977]
108316247  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
108316632  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
108316912  CUL5; cullin-5 isoform X1 [KO:K10612]
108317116  CUL7; cullin-7 isoform X1 [KO:K10613]
108317318  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
108317351  [KO:K03872]
108317496  PML; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
108317630  SKP2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
108317923  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
108317984  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
108318067  [KO:K03357]
108318145  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
108318299  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
108318568  RHOBTB2; rho-related BTB domain-containing protein 2 isoform X1 [KO:K07868]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
cimi03050  Proteasome
KO pathway
ko04120   

DBGET integrated database retrieval system