KEGG   PATHWAY: dpub04120
Entry
dpub04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Dryobates pubescens (Downy woodpecker)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
dpub04120  Ubiquitin mediated proteolysis
dpub04120

Other DBs
GO: 0016567
Organism
Dryobates pubescens (Downy woodpecker) [GN:dpub]
Gene
104296261  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
104296737  UBE2K; ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
104296882  ANAPC10; anaphase-promoting complex subunit 10 [KO:K03357]
104296974  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
104297051  CUL2; cullin-2 [KO:K03870]
104297067  MID1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
104297087  CBLB; E3 ubiquitin-protein ligase CBL-B [KO:K22517] [EC:2.3.2.27]
104297190  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
104297431  DDB2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
104297622  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
104297635  CUL3; cullin-3 isoform X1 [KO:K03869]
104297655  SMURF1; E3 ubiquitin-protein ligase SMURF1 [KO:K04678] [EC:2.3.2.26]
104297800  RHOBTB2; rho-related BTB domain-containing protein 2 [KO:K07868]
104297878  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
104297971  UBA6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
104298012  UBE2O; LOW QUALITY PROTEIN: E2/E3 hybrid ubiquitin-protein ligase UBE2O [KO:K10581] [EC:2.3.2.24]
104298056  [KO:K10614] [EC:2.3.2.26]
104298133  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 [KO:K10582] [EC:2.3.2.23]
104298160  UBR5; E3 ubiquitin-protein ligase UBR5 [KO:K10593] [EC:2.3.2.26]
104298191  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
104298260  CUL1; cullin-1 [KO:K03347]
104298357  ANAPC15; anaphase-promoting complex subunit 15 [KO:K25228]
104298498  UBE3C; LOW QUALITY PROTEIN: ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
104298560  ANAPC16; anaphase-promoting complex subunit 16 isoform X1 [KO:K25229]
104298567  UBE2D1; ubiquitin-conjugating enzyme E2 D1 [KO:K06689] [EC:2.3.2.23]
104298635  CDC16; cell division cycle protein 16 homolog [KO:K03353]
104298650  CUL4A; cullin-4A [KO:K10609]
104298735  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
104298810  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
104298940  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
104299294  UBE2G2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
104299555  XIAP; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
104299581  [KO:K03872]
104299622  FANCL; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
104299677  [KO:K20217] [EC:2.3.2.23]
104299678  [KO:K20217] [EC:2.3.2.23]
104299730  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
104299759  DDB1; DNA damage-binding protein 1 [KO:K10610]
104299932  UBE3A; ubiquitin-protein ligase E3A [KO:K10587] [EC:2.3.2.26]
104300052  UBE2H; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
104300170  [KO:K10447]
104300275  MGRN1; E3 ubiquitin-protein ligase MGRN1 [KO:K10604] [EC:2.3.2.27]
104300460  UBOX5; RING finger protein 37 isoform X1 [KO:K10600] [EC:2.3.2.27]
104300537  UBE2F; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
104300566  BRCA1; LOW QUALITY PROTEIN: breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
104300630  BIRC2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
104300643  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
104300706  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
104300966  CBL; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
104301185  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
104301193  CUL4B; cullin-4B [KO:K10609]
104301325  PIAS2; E3 SUMO-protein ligase PIAS2 [KO:K16063] [EC:2.3.2.-]
104301465  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
104301547  CDC20; cell division cycle protein 20 homolog [KO:K03363]
104301649  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
104301680  ANAPC1; anaphase-promoting complex subunit 1 [KO:K03348]
104301858  CDC23; cell division cycle protein 23 homolog [KO:K03355]
104301877  FBXW11; F-box/WD repeat-containing protein 11 [KO:K03362]
104302195  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
104302258  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
104302338  RRP8; ribosomal RNA-processing protein 8 [KO:K10260]
104302586  [KO:K02207] [EC:2.3.2.23]
104302719  TRIM37; E3 ubiquitin-protein ligase TRIM37 [KO:K10608] [EC:2.3.2.27]
104302734  UBB; polyubiquitin-B isoform X1 [KO:K08770]
104303135  SKP2; S-phase kinase-associated protein 2 [KO:K03875]
104303240  PIAS4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
104303266  PIAS1; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
104303358  DET1; DET1 homolog [KO:K10571]
104303455  RFWD2; E3 ubiquitin-protein ligase RFWD2 [KO:K10143] [EC:2.3.2.27]
104303757  WWP2; LOW QUALITY PROTEIN: NEDD4-like E3 ubiquitin-protein ligase WWP2 [KO:K05630] [EC:2.3.2.26]
104303859  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
104304193  ANAPC4; anaphase-promoting complex subunit 4 [KO:K03351]
104304661  HERC2; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
104304786  TRAF6; LOW QUALITY PROTEIN: TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
104305189  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
104305264  RHOBTB1; rho-related BTB domain-containing protein 1 [KO:K07868]
104305541  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
104305644  FBXO4; F-box only protein 4 [KO:K10291]
104305675  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
104305777  SIAH1; E3 ubiquitin-protein ligase SIAH1 [KO:K04506] [EC:2.3.2.27]
104305801  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
104305844  FBXO2; F-box only protein 2 [KO:K10099]
104305858  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
104305873  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
104306137  TRIM32; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
104306176  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
104306256  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
104306312  CUL5; cullin-5 [KO:K10612]
104306360  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
104306625  UBE2W; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
104306670  UBA7; ubiquitin-like modifier-activating enzyme 7 [KO:K03178] [EC:6.2.1.45]
104306804  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
104307089  BTRC; F-box/WD repeat-containing protein 1A [KO:K03362]
104307282  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
104307712  PARK2; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
104307769  UBE2D3; ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
104307897  [KO:K10447]
104308029  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
104308268  FZR1; fizzy-related protein homolog isoform X1 [KO:K03364]
104308393  ANAPC7; anaphase-promoting complex subunit 7 [KO:K03354]
104308398  ANAPC5; LOW QUALITY PROTEIN: anaphase-promoting complex subunit 5 [KO:K03352]
104308430  UBE3B; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
104308551  FBXW8; F-box/WD repeat-containing protein 8 [KO:K10264]
104308733  BIRC7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
104308841  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
104308856  [KO:K07868]
104309200  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 [KO:K05633] [EC:2.3.2.26]
104309219  CDC27; LOW QUALITY PROTEIN: cell division cycle protein 27 homolog [KO:K03350]
104309452  TCEB1; transcription elongation factor B polypeptide 1 [KO:K03872]
104309583  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
104309594  UBE2B; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
104309644  UBE2L3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
104309701  PPIL2; peptidyl-prolyl cis-trans isomerase-like 2 [KO:K10598] [EC:5.2.1.8]
104309861  NEDD4; E3 ubiquitin-protein ligase NEDD4 [KO:K10591] [EC:2.3.2.26]
104309871  HERC1; LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC1 [KO:K10594] [EC:2.3.2.26]
104309995  [KO:K10603]
104310304  BIRC6; baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
dpub03050  Proteasome
KO pathway
ko04120   

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