KEGG   PATHWAY: enf00270
Entry
enf00270                    Pathway                                
Name
Cysteine and methionine metabolism - Enterobacter sp. FY-07
Description
Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
Class
Metabolism; Amino acid metabolism
Pathway map
enf00270  Cysteine and methionine metabolism
enf00270

Module
enf_M00017  Methionine biosynthesis, aspartate => homoserine => methionine [PATH:enf00270]
enf_M00021  Cysteine biosynthesis, serine => cysteine [PATH:enf00270]
enf_M00034  Methionine salvage pathway [PATH:enf00270]
enf_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:enf00270]
Other DBs
GO: 0006534 0006555
Organism
Enterobacter sp. FY-07 [GN:enf]
Gene
AKI40_0142  Serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
AKI40_1430  cysK; Cysteine synthase A [KO:K01738] [EC:2.5.1.47]
AKI40_3887  Cysteine synthase B [KO:K01738] [EC:2.5.1.47]
AKI40_0898  Cystathionine gamma-synthase, PLP-dependent [KO:K01758] [EC:4.4.1.1]
AKI40_0742  metC; Cystathionine beta-lyase [KO:K01760] [EC:4.4.1.13]
AKI40_0899  Cysteine synthase [KO:K01697] [EC:4.2.1.22]
AKI40_4387  mmuM; Homocysteine/selenocysteine methylase [KO:K00547] [EC:2.1.1.10]
AKI40_4694  B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase, repressor of metE and metF [KO:K00548] [EC:2.1.1.13]
AKI40_4767  metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [KO:K00549] [EC:2.1.1.14]
AKI40_0820  S-adenosylmethionine synthase [KO:K00789] [EC:2.5.1.6]
AKI40_4160  S-adenosylmethionine decarboxylase alpha chain [KO:K01611] [EC:4.1.1.50]
AKI40_4159  speE; Spermidine synthase [KO:K00797] [EC:2.5.1.16]
AKI40_4130  MTA/SAH nucleosidase [KO:K01243] [EC:3.2.2.9]
AKI40_3675  5-methylthioribose kinase [KO:K00899] [EC:2.7.1.100]
AKI40_1275  ABC transporter, permease protein [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
AKI40_3674  translation initiation factor eIF-2B alpha subunit [KO:K08963] [EC:5.3.1.23]
AKI40_2095  Methylthioribulose-1-phosphate dehydratase [KO:K08964] [EC:4.2.1.109]
AKI40_2094  Enolase-phosphatase E1 [KO:K09880] [EC:3.1.3.77]
AKI40_2093  Acireductone dioxygenase apoprotein [KO:K08967] [EC:1.13.11.53 1.13.11.54]
AKI40_4651  Aromatic-amino-acid transaminase TyrB [KO:K00832] [EC:2.6.1.57]
AKI40_3549  putative membrane protein YebR [KO:K08968] [EC:1.8.4.14]
AKI40_1113  Cytosine-specific methyltransferase [KO:K00558] [EC:2.1.1.37]
AKI40_2468  DNA -methyltransferase [KO:K00558] [EC:2.1.1.37]
AKI40_1089  luxS; Autoinducer-2 synthase protein [KO:K07173] [EC:4.4.1.21]
AKI40_3066  aspartate kinase III [KO:K00928] [EC:2.7.2.4]
AKI40_4683  Lysine-sensitive aspartokinase 3 [KO:K00928] [EC:2.7.2.4]
AKI40_4265  thrA; Aspartokinase/homoserine dehydrogenase, threonine-sensitive [KO:K12524] [EC:2.7.2.4 1.1.1.3]
AKI40_4842  Bifunctional aspartate kinase II/homoserine dehydrogenase II [KO:K12525] [EC:2.7.2.4 1.1.1.3]
AKI40_0375  Aspartate-semialdehyde dehydrogenase Asd [KO:K00133] [EC:1.2.1.11]
AKI40_4701  Homoserine O-succinyltransferase [KO:K00651] [EC:2.3.1.46 2.3.1.31]
AKI40_3700  Alpha/beta hydrolase fold protein [KO:K00641] [EC:2.3.1.31 2.3.1.46]
AKI40_4843  Cystathionine gamma-synthase, PLP-dependent [KO:K01739] [EC:2.5.1.48]
AKI40_4816  ilvE; Branched chain amino acid aminotransferase [KO:K00826] [EC:2.6.1.42]
AKI40_1088  Glutamate--cysteine ligase [KO:K01919] [EC:6.3.2.2]
AKI40_0815  gshB; Glutathione synthase, putative [KO:K01920] [EC:6.3.2.3]
AKI40_2414  Aspartate aminotransferase, PLP-dependent [KO:K00813] [EC:2.6.1.1]
AKI40_1338  3-mercaptopyruvate sulfurtransferase sseA [KO:K01011] [EC:2.8.1.1 2.8.1.2]
AKI40_3010  Malate dehydrogenase [KO:K00016] [EC:1.1.1.27]
AKI40_0917  Aspartate racemase family protein [KO:K25316] [EC:5.1.1.10]
AKI40_1982  dcyD; D-cysteine desulfhydrase, PLP-dependent [KO:K05396] [EC:4.4.1.15]
AKI40_0551  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AKI40_4522  D-cysteine desulfhydrase family protein [KO:K17950] [EC:4.4.1.25]
AKI40_4067  sdaB; L-serine dehydratase 2 [KO:K01752] [EC:4.3.1.17]
AKI40_3527  L-serine ammonia-lyase 1 [KO:K01752] [EC:4.3.1.17]
AKI40_1424  Cysteine synthase B [KO:K12339] [EC:2.5.1.144]
AKI40_3071  serA; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding [KO:K00058] [EC:1.1.1.95 1.1.1.399]
AKI40_0834  serA; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding [KO:K00058] [EC:1.1.1.95 1.1.1.399]
AKI40_2392  serC; Phosphoserine aminotransferase [KO:K00831] [EC:2.6.1.52]
Compound
C00019  S-Adenosyl-L-methionine
C00021  S-Adenosyl-L-homocysteine
C00022  Pyruvate
C00041  L-Alanine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00094  Sulfite
C00097  L-Cysteine
C00109  2-Oxobutanoate
C00155  L-Homocysteine
C00170  5'-Methylthioadenosine
C00197  3-Phospho-D-glycerate
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00409  Methanethiol
C00441  L-Aspartate 4-semialdehyde
C00491  L-Cystine
C00506  L-Cysteate
C00606  3-Sulfino-L-alanine
C00793  D-Cysteine
C00957  Mercaptopyruvate
C00979  O-Acetyl-L-serine
C01005  O-Phospho-L-serine
C01077  O-Acetyl-L-homoserine
C01118  O-Succinyl-L-homoserine
C01137  S-Adenosylmethioninamine
C01180  4-Methylthio-2-oxobutanoic acid
C01234  1-Aminocyclopropane-1-carboxylate
C01817  L-Homocystine
C01962  Thiocysteine
C02218  Dehydroalanine
C02291  L-Cystathionine
C02356  (S)-2-Aminobutanoate
C02989  L-Methionine S-oxide
C03082  4-Phospho-L-aspartate
C03089  5-Methylthio-D-ribose
C03145  N-Formylmethionine
C03232  3-Phosphonooxypyruvate
C03431  S-Inosyl-L-homocysteine
C03539  S-Ribosyl-L-homocysteine
C04188  S-Methyl-5-thio-D-ribose 1-phosphate
C04582  S-Methyl-5-thio-D-ribulose 1-phosphate
C05324  Nicotianamine
C05524  Aminoacyl-L-methionine
C05526  S-Glutathionyl-L-cysteine
C05527  3-Sulfinylpyruvate
C05528  3-Sulfopyruvate
C05823  3-Mercaptolactate
C05824  S-Sulfo-L-cysteine
C06547  Ethylene
C08276  3-(Methylthio)propanoate
C09306  Sulfur dioxide
C11437  1-Deoxy-D-xylulose 5-phosphate
C11481  HSO3-
C11499  (S)-3-Sulfolactate
C11537  (2R)-3-Sulfolactate
C15606  1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one
C15650  2,3-Diketo-5-methylthiopentyl-1-phosphate
C15651  2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
C18049  N-Acyl-L-homoserine lactone
C19787  5'-S-Methyl-5'-thioinosine
C21015  gamma-L-Glutamyl-L-2-aminobutyrate
C21016  Ophthalmate
C22359  S-Methyl-1-thio-D-xylulose 5-phosphate
Reference
  Authors
Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A
  Title
Bacterial variations on the methionine salvage pathway.
  Journal
BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9
Reference
  Authors
Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.
  Title
A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.
  Journal
Science 302:286-90 (2003)
DOI:10.1126/science.1086997
Reference
  Authors
Sekowska A, Danchin A.
  Title
The methionine salvage pathway in Bacillus subtilis.
  Journal
BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8
Reference
  Authors
Berger BJ, English S, Chan G, Knodel MH.
  Title
Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.
  Journal
J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003
Reference
  Authors
Goyer A, Collakova E, Shachar-Hill Y, Hanson AD
  Title
Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.
  Journal
Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055
Reference
  Authors
Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S
  Title
Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.
  Journal
Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103
Reference
  Authors
Pirkov I, Norbeck J, Gustafsson L, Albers E
  Title
A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.
  Journal
FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x
Reference
  Authors
Ashida H, Saito Y, Kojima C, Yokota A
  Title
Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.
  Journal
Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651
Reference
  Authors
Kitabatake M, So MW, Tumbula DL, Soll D
  Title
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?
  Journal
J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000
Reference
  Authors
Mino K, Ishikawa K
  Title
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
  Journal
J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003
Reference
  Authors
Tanabe S
  Title
Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.
  Journal
Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Gutierrez JA, Crowder T, Rinaldo-Matthis A, Ho MC, Almo SC, Schramm VL
  Title
Transition state analogs of 5'-methylthioadenosine nucleosidase disrupt quorum sensing.
  Journal
Nat Chem Biol 5:251-7 (2009)
DOI:10.1038/nchembio.153
Related
pathway
enf00010  Glycolysis / Gluconeogenesis
enf00250  Alanine, aspartate and glutamate metabolism
enf00260  Glycine, serine and threonine metabolism
enf00290  Valine, leucine and isoleucine biosynthesis
enf00430  Taurine and hypotaurine metabolism
enf00480  Glutathione metabolism
enf00620  Pyruvate metabolism
enf00640  Propanoate metabolism
enf00770  Pantothenate and CoA biosynthesis
enf00900  Terpenoid backbone biosynthesis
enf00920  Sulfur metabolism
KO pathway
ko00270   
LinkDB

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