KEGG   PATHWAY: panu04120
Entry
panu04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Papio anubis (olive baboon)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
panu04120  Ubiquitin mediated proteolysis
panu04120

Other DBs
GO: 0016567
Organism
Papio anubis (olive baboon) [GN:panu]
Gene
101020037  UBC; LOW QUALITY PROTEIN: polyubiquitin-C [KO:K04551]
101022082  ubiquitin-like [KO:K02927]
101018915  UBA52; ubiquitin-60S ribosomal protein L40 isoform X2 [KO:K02927]
101020976  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
101021708  ubiquitin-like [KO:K02977]
101017972  UBA1; ubiquitin-like modifier-activating enzyme 1 isoform X1 [KO:K03178] [EC:6.2.1.45]
101022313  SAE1; SUMO-activating enzyme subunit 1 isoform X1 [KO:K10684] [EC:6.2.1.45]
101021115  UBA2; SUMO-activating enzyme subunit 2 isoform X1 [KO:K10685] [EC:6.2.1.45]
101013877  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
101016869  UBA7; ubiquitin-like modifier-activating enzyme 7 isoform X1 [KO:K10698] [EC:6.2.1.45]
100998947  UBA6; ubiquitin-like modifier-activating enzyme 6 isoform X1 [KO:K10699] [EC:6.2.1.45]
101003064  UBE2A; ubiquitin-conjugating enzyme E2 A isoform X1 [KO:K10573] [EC:2.3.2.23]
101024798  UBE2B; ubiquitin-conjugating enzyme E2 B isoform X1 [KO:K10574] [EC:2.3.2.23]
116268818  ubiquitin-conjugating enzyme E2 C-like [KO:K06688] [EC:2.3.2.23]
100997666  ubiquitin-conjugating enzyme E2 C-like [KO:K06688] [EC:2.3.2.23]
101009556  UBE2C; ubiquitin-conjugating enzyme E2 C isoform X1 [KO:K06688] [EC:2.3.2.23]
101015438  UBE2D4; ubiquitin-conjugating enzyme E2 D4 isoform X5 [KO:K06689] [EC:2.3.2.23]
100998715  UBE2D3; ubiquitin-conjugating enzyme E2 D3 isoform X4 [KO:K06689] [EC:2.3.2.23]
100999809  UBE2D2; ubiquitin-conjugating enzyme E2 D2 isoform X4 [KO:K06689] [EC:2.3.2.23]
101003179  UBE2D1; ubiquitin-conjugating enzyme E2 D1 [KO:K06689] [EC:2.3.2.23]
101002869  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
101004978  UBE2E1; ubiquitin-conjugating enzyme E2 E1 isoform X1 [KO:K20217] [EC:2.3.2.23]
101004276  UBE2E2; ubiquitin-conjugating enzyme E2 E2 isoform X2 [KO:K20217] [EC:2.3.2.23]
101026368  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X4 [KO:K10687] [EC:2.3.2.34]
101011735  UBE2G1; ubiquitin-conjugating enzyme E2 G1 isoform X2 [KO:K10575] [EC:2.3.2.23]
101017327  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
101003018  UBE2H; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
101012005  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
101005234  UBE2J1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
101004589  UBE2J2; ubiquitin-conjugating enzyme E2 J2 isoform X1 [KO:K04554] [EC:2.3.2.23]
101006172  UBE2K; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
101009793  UBE2L3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
101020504  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 [KO:K04553] [EC:2.3.2.23]
101025419  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
101000633  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
101013449  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
103884777  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
101022098  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
103880518  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
101019955  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X1 [KO:K10581] [EC:2.3.2.24]
110743425  UBE2QL1; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
101026135  UBE2Q1; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
101015950  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
101015318  UBE2R2; ubiquitin-conjugating enzyme E2 R2 isoform X1 [KO:K02207] [EC:2.3.2.23]
101009846  ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
101020692  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
101000428  UBE2U; ubiquitin-conjugating enzyme E2 U isoform X1 [KO:K10584] [EC:2.3.2.23]
101024590  UBE2W; ubiquitin-conjugating enzyme E2 W isoform X5 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
101020073  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
100999515  BIRC6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
101014661  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
101013372  UBE3B; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
101024184  UBE3C; ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
101016514  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
101009397  SMURF2; E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
101020727  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X3 [KO:K05632] [EC:2.3.2.26]
100998869  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
101014645  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X2 [KO:K05630] [EC:2.3.2.26]
101008557  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X6 [KO:K10590] [EC:2.3.2.26]
101016432  E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
116272920  E3 ubiquitin-protein ligase NEDD4-like [KO:K10591] [EC:2.3.2.26]
101005585  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X17 [KO:K13305] [EC:2.3.2.26]
101013598  HUWE1; E3 ubiquitin-protein ligase HUWE1 isoform X9 [KO:K10592] [EC:2.3.2.26]
101026944  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X4 [KO:K10593] [EC:2.3.2.26]
101019417  HERC1; probable E3 ubiquitin-protein ligase HERC1 isoform X7 [KO:K10594] [EC:2.3.2.26]
101024443  HERC2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
101019508  HERC3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
101005871  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X4 [KO:K10615] [EC:2.3.2.26]
101018155  UBE4A; ubiquitin conjugation factor E4 A isoform X2 [KO:K10596] [EC:2.3.2.27]
101005535  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
101011336  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 isoform X3 [KO:K10598] [EC:5.2.1.8]
101007031  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
100999601  UBOX5; RING finger protein 37 isoform X1 [KO:K10600]
101016712  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
101005565  CBL; E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
101011142  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
101017356  CBLC; E3 ubiquitin-protein ligase CBL-C isoform X1 [KO:K22518] [EC:2.3.2.27]
101013061  PRKN; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
101021969  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
100998970  E3 ubiquitin-protein ligase SIAH1-like [KO:K04506] [EC:2.3.2.27]
101019999  PML; protein PML isoform X4 [KO:K10054] [EC:2.3.2.-]
101002649  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
100137396  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
101016735  COP1; E3 ubiquitin-protein ligase COP1 isoform X10 [KO:K10143] [EC:2.3.2.27]
101017011  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
101026503  BIRC2; baculoviral IAP repeat-containing protein 2 isoform X2 [KO:K16060]
100997299  BIRC3; baculoviral IAP repeat-containing protein 3 isoform X1 [KO:K16060]
100998457  LOW QUALITY PROTEIN: baculoviral IAP repeat-containing protein 8 [KO:K04725] [EC:2.3.2.27]
101022825  XIAP; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
101016461  BIRC7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
101018585  PIAS1; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
101000815  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X5 [KO:K16063] [EC:2.3.2.-]
101001162  PIAS4; E3 SUMO-protein ligase PIAS4 isoform X2 [KO:K16065] [EC:2.3.2.27]
101026495  SYVN1; E3 ubiquitin-protein ligase synoviolin isoform X5 [KO:K10601] [EC:2.3.2.27]
101018172  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
100999537  AIRE; autoimmune regulator isoform X1 [KO:K10603]
101011423  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X2 [KO:K10604] [EC:2.3.2.27]
101022062  BRCA1; breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
100999974  FANCL; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
101015249  MID1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
101010674  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
101017695  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
101025661  RBX1; E3 ubiquitin-protein ligase RBX1 isoform X1 [KO:K03868] [EC:2.3.2.32]
101000243  CUL1; cullin-1 [KO:K03347]
101022453  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
101025156  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
101010993  BTRC; F-box/WD repeat-containing protein 1A isoform X7 [KO:K03362]
101000264  SKP2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
101006527  FBXW7; F-box/WD repeat-containing protein 7 isoform X4 [KO:K10260]
101016475  FBXO2; F-box only protein 2 [KO:K10099]
101020334  FBXO4; F-box only protein 4 isoform X1 [KO:K10291]
101012633  CUL2; cullin-2 isoform X1 [KO:K03870]
101026337  ELOC; elongin-C isoform X1 [KO:K03872]
101008741  ELOB; elongin-B isoform X1 [KO:K03873]
101024033  VHL; von Hippel-Lindau disease tumor suppressor isoform X3 [KO:K03871]
101025784  CUL3; cullin-3 isoform X1 [KO:K03869]
101025614  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
101019712  KLHL9; kelch-like protein 9 [KO:K10447]
101023528  KLHL13; kelch-like protein 13 isoform X3 [KO:K10447]
101002129  RHOBTB2; rho-related BTB domain-containing protein 2 isoform X1 [KO:K07868]
101025054  RHOBTB1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
101012140  CUL4B; cullin-4B isoform X1 [KO:K10609]
101025606  CUL4A; cullin-4A isoform X1 [KO:K10609]
101001825  DDB1; DNA damage-binding protein 1 [KO:K10610]
100998564  DDB2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
101013203  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
101015258  DET1; DET1 homolog isoform X2 [KO:K10571]
101023104  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
101019706  CUL5; LOW QUALITY PROTEIN: cullin-5 [KO:K10612]
101008144  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
101007066  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
101009738  CUL7; cullin-7 isoform X7 [KO:K10613]
101022858  FBXW8; F-box/WD repeat-containing protein 8 isoform X1 [KO:K10264]
101007414  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
101003223  ANAPC2; anaphase-promoting complex subunit 2 isoform X1 [KO:K03349]
101001004  CDC20; cell division cycle protein 20 homolog [KO:K03363]
101023610  FZR1; fizzy-related protein homolog isoform X2 [KO:K03364]
101015415  ANAPC1; anaphase-promoting complex subunit 1 isoform X2 [KO:K03348]
101010691  CDC27; cell division cycle protein 27 homolog isoform X3 [KO:K03350]
101011179  ANAPC4; anaphase-promoting complex subunit 4 isoform X2 [KO:K03351]
101020484  ANAPC5; anaphase-promoting complex subunit 5 isoform X3 [KO:K03352]
101004072  CDC16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
101026357  ANAPC7; anaphase-promoting complex subunit 7 isoform X1 [KO:K03354]
101016424  CDC23; cell division cycle protein 23 homolog [KO:K03355]
101015461  ANAPC10; anaphase-promoting complex subunit 10 isoform X4 [KO:K03357]
103878141  CDC26; anaphase-promoting complex subunit CDC26 isoform X1 [KO:K03359]
101025444  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
100999272  ANAPC15; anaphase-promoting complex subunit 15 isoform X2 [KO:K25228]
101006219  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
panu03050  Proteasome
KO pathway
ko04120   
LinkDB

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