KEGG   PATHWAY: cbrc04137
Entry
cbrc04137                   Pathway                                
Name
Mitophagy - animal - Corvus brachyrhynchos (American crow)
Description
Mitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process called reactive oxidative species (ROS) lead to mitochondrial dysfunction. If the damage is too excessive to be repaired, such mitochondria are selectively recognized and targeted for degradation by a specific mode of autophagy, termed mitophagy. The loss of the mitochondrial membrane potential can induce mitophagy, involving the kinase PINK1 and the E3 ligase Parkin. PINK1 serves as the sensor for the mitochondrial depolarization and recruits Parkin, followed by ubiquitin-dependent recruitment of mitophagy receptors. There are also several PINK1/Parkin-independent mitophagy pathways, in which a group of LIR-containing receptors are required in response to different stimuli. Mitophagy contributes to the maintenance of a healthy mitochondrial network and the prevention of programmed cell death.
Class
Cellular Processes; Transport and catabolism
Pathway map
cbrc04137  Mitophagy - animal
cbrc04137

Other DBs
GO: 0000422
Organism
Corvus brachyrhynchos (American crow) [GN:cbrc]
Gene
103620926  AMBRA1; activating molecule in BECN1-regulated autophagy protein 1 isoform X1 [KO:K17985]
103616201  PINK1; serine/threonine-protein kinase PINK1, mitochondrial [KO:K05688] [EC:2.7.11.1]
103624156  TOMM20; mitochondrial import receptor subunit TOM20 homolog [KO:K17770]
103614004  TOMM70; mitochondrial import receptor subunit TOM70 [KO:K17768]
103624193  PARK2; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
103624519  MARCH5; E3 ubiquitin-protein ligase MARCH5 [KO:K10660] [EC:2.3.2.27]
103614998  TRAF2; TNF receptor-associated factor 2 isoform X1 [KO:K03173] [EC:2.3.2.27]
103615572  SMURF1; E3 ubiquitin-protein ligase SMURF1 [KO:K04678] [EC:2.3.2.26]
103619088  SMURF2; E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
103620166  AMFR; E3 ubiquitin-protein ligase AMFR [KO:K10636] [EC:2.3.2.36]
103625126  mitochondrial ubiquitin ligase activator of nfkb 1-A [KO:K15688] [EC:2.3.2.27]
103616200  MUL1; mitochondrial ubiquitin ligase activator of NFKB 1 [KO:K15688] [EC:2.3.2.27]
103620199  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
103613486  ARIH1; E3 ubiquitin-protein ligase ARIH1 [KO:K11968] [EC:2.3.2.31]
103625100  MFN1; mitofusin-1 isoform X1 [KO:K21356] [EC:3.6.5.-]
103616125  MFN2; mitofusin-2 [KO:K06030] [EC:3.6.5.-]
103619082  RHOT1; mitochondrial Rho GTPase 1 [KO:K07870] [EC:3.6.5.-]
103623031  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
103613347  UBB; polyubiquitin-B isoform X2 [KO:K04551]
103615904  UBC; polyubiquitin-C [KO:K08770]
103614140  TAX1BP1; tax1-binding protein 1 isoform X1 [KO:K21347]
103611516  SQSTM1; sequestosome-1 isoform X1 [KO:K14381]
103619943  calcium-binding and coiled-coil domain-containing protein 2 isoform X1 [KO:K21348]
108448233  calcium-binding and coiled-coil domain-containing protein 2-like [KO:K21348]
103619829  OPTN; optineurin isoform X1 [KO:K19946]
103621810  NBR1; next to BRCA1 gene 1 protein isoform X4 [KO:K17987]
103614801  TBK1; serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]
103620609  GABARAPL2; gamma-aminobutyric acid receptor-associated protein-like 2 [KO:K08341]
103623400  GABARAPL1; gamma-aminobutyric acid receptor-associated protein-like 1 [KO:K08341]
103614099  gamma-aminobutyric acid receptor-associated protein [KO:K08341]
103620551  MAP1LC3B; microtubule-associated proteins 1A/1B light chain 3B [KO:K10435]
103617070  MAP1LC3C; microtubule-associated proteins 1A/1B light chain 3C [KO:K10435]
103619011  MAP1LC3A; microtubule-associated proteins 1A/1B light chain 3A [KO:K10435]
103621613  BECN1; LOW QUALITY PROTEIN: beclin-1 [KO:K08334]
103621270  USP8; ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [KO:K11839] [EC:3.4.19.12]
103614874  USP15; ubiquitin carboxyl-terminal hydrolase 15 isoform X1 [KO:K21343] [EC:3.4.19.12]
103616063  USP30; ubiquitin carboxyl-terminal hydrolase 30 [KO:K11851] [EC:3.4.19.12]
103616082  BCL2L1; bcl-2-like protein 1 [KO:K04570]
103616095  PGAM5; serine/threonine-protein phosphatase PGAM5, mitochondrial [KO:K15637] [EC:3.1.3.16]
103620240  CSNK2A2; casein kinase II subunit alpha' [KO:K03097] [EC:2.7.11.1]
103616111  CSNK2A1; casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
103615574  SRC; proto-oncogene tyrosine-protein kinase Src isoform X1 [KO:K05704] [EC:2.7.10.2]
103616091  ULK1; serine/threonine-protein kinase ULK1 [KO:K21357] [EC:2.7.11.1]
103615068  FUNDC1; FUN14 domain-containing protein 1 [KO:K17986]
103615304  BNIP3; BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 [KO:K15464]
103614518  BNIP3L; BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like [KO:K15465]
103624696  BCL2L13; bcl-2-like protein 13 isoform X1 [KO:K15485]
103621193  FKBP8; peptidyl-prolyl cis-trans isomerase FKBP8 [KO:K09574] [EC:5.2.1.8]
103619969  SAMM50; sorting and assembly machinery component 50 homolog [KO:K07277]
103614068  PHB2; LOW QUALITY PROTEIN: prohibitin-2 [KO:K17081]
103618588  NLRX1; NLR family member X1 isoform X1 [KO:K12653]
103611276  MTX1; metaxin-1 [KO:K17776]
103622049  MTX3; metaxin-3 [KO:K17776]
103616631  MTX2; metaxin-2 [KO:K17776]
103611209  EIF2AK3; eukaryotic translation initiation factor 2-alpha kinase 3 [KO:K08860] [EC:2.7.11.1]
103620814  EIF2S1; eukaryotic translation initiation factor 2 subunit 1 [KO:K03237]
103618102  ATF4; cyclic AMP-dependent transcription factor ATF-4 [KO:K04374]
103611388  MAPK9; mitogen-activated protein kinase 9 isoform X2 [KO:K04440] [EC:2.7.11.24]
103622357  MAPK10; mitogen-activated protein kinase 10 isoform X4 [KO:K04440] [EC:2.7.11.24]
103624489  MAPK8; mitogen-activated protein kinase 8 isoform X2 [KO:K04440] [EC:2.7.11.24]
103615058  JUN; transcription factor AP-1 [KO:K04448]
103620698  HRAS; GTPase HRas [KO:K02833]
103623350  KRAS; GTPase KRas isoform X2 [KO:K07827]
103625276  NRAS; GTPase NRas [KO:K07828]
103619696  MRAS; ras-related protein M-Ras [KO:K07831]
103625461  RRAS2; ras-related protein R-Ras2 [KO:K07830]
103616228  E2F1; transcription factor E2F1 [KO:K17454]
103618818  HIF1A; hypoxia-inducible factor 1-alpha [KO:K08268]
103620426  SP1; transcription factor Sp1 [KO:K04684]
103619388  FOXO3; forkhead box protein O3 [KO:K09408]
103617677  CITED2; cbp/p300-interacting transactivator 2 [KO:K21361]
103624365  MITF; microphthalmia-associated transcription factor isoform X2 [KO:K09455]
103625368  TFEB; transcription factor EB [KO:K15590]
103621517  RABGEF1; rab5 GDP/GTP exchange factor isoform X6 [KO:K20131]
103614122  RAB5A; ras-related protein Rab-5A [KO:K07887]
108447914  ras-related protein Rab-5B-like [KO:K07888]
103620218  RAB5C; ras-related protein Rab-5C [KO:K07889]
103614246  MON1A; vacuolar fusion protein MON1 homolog A [KO:K20195]
103615446  CCZ1; vacuolar fusion protein CCZ1 homolog [KO:K27045]
103614310  RAB7A; ras-related protein Rab-7a [KO:K07897]
103625330  RAB7B; ras-related protein Rab-7b isoform X1 [KO:K07898]
103614897  TBC1D15; TBC1 domain family member 15 [KO:K20168]
103611256  ATG9A; autophagy-related protein 9A [KO:K17907]
103624844  OPA1; dynamin-like 120 kDa protein, mitochondrial isoform X1 [KO:K17079] [EC:3.6.5.5]
103623854  VCP; transitional endoplasmic reticulum ATPase [KO:K13525]
103613937  transitional endoplasmic reticulum ATPase [KO:K13525]
Compound
C00035  GDP
C00044  GTP
Reference
  Authors
Pickrell AM, Youle RJ
  Title
The roles of PINK1, parkin, and mitochondrial fidelity in Parkinson's disease.
  Journal
Neuron 85:257-73 (2015)
DOI:10.1016/j.neuron.2014.12.007
Reference
  Authors
Durcan TM, Fon EA
  Title
The three 'P's of mitophagy: PARKIN, PINK1, and post-translational modifications.
  Journal
Genes Dev 29:989-99 (2015)
DOI:10.1101/gad.262758.115
Reference
  Authors
Shirihai OS, Song M, Dorn GW 2nd
  Title
How mitochondrial dynamism orchestrates mitophagy.
  Journal
Circ Res 116:1835-49 (2015)
DOI:10.1161/CIRCRESAHA.116.306374
Reference
  Authors
Hamacher-Brady A, Brady NR
  Title
Mitophagy programs: mechanisms and physiological implications of mitochondrial targeting by autophagy.
  Journal
Cell Mol Life Sci 73:775-95 (2016)
DOI:10.1007/s00018-015-2087-8
Reference
  Authors
Yamano K, Matsuda N, Tanaka K
  Title
The ubiquitin signal and autophagy: an orchestrated dance leading to mitochondrial degradation.
  Journal
EMBO Rep 17:300-16 (2016)
DOI:10.15252/embr.201541486
Reference
  Authors
Yamaguchi O, Murakawa T, Nishida K, Otsu K
  Title
Receptor-mediated mitophagy.
  Journal
J Mol Cell Cardiol 95:50-6 (2016)
DOI:10.1016/j.yjmcc.2016.03.010
Reference
  Authors
Roberts RF, Tang MY, Fon EA, Durcan TM
  Title
Defending the mitochondria: The pathways of mitophagy and mitochondrial-derived vesicles.
  Journal
Int J Biochem Cell Biol 79:427-436 (2016)
DOI:10.1016/j.biocel.2016.07.020
Reference
  Authors
Arena G, Valente EM
  Title
PINK1 in the limelight: multiple functions of an eclectic protein in human health and disease.
  Journal
J Pathol 241:251-263 (2017)
DOI:10.1002/path.4815
Related
pathway
cbrc04140  Autophagy - animal
cbrc04210  Apoptosis
KO pathway
ko04137   
LinkDB

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