KEGG   PATHWAY: mmea04120
Entry
mmea04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Malurus melanocephalus (red-backed fairy wren)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
mmea04120  Ubiquitin mediated proteolysis
mmea04120

Other DBs
GO: 0016567
Organism
Malurus melanocephalus (red-backed fairy wren) [GN:mmea]
Gene
130577002  UBC; polyubiquitin-C [KO:K08770]
130583091  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
130586455  LOW QUALITY PROTEIN: ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
130574688  UBA7; ubiquitin-like modifier-activating enzyme 7 isoform X1 [KO:K03178] [EC:6.2.1.45]
130578299  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
130573729  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
130579699  UBA6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
130573291  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
130576569  UBE2B; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
130573512  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
130580296  UBE2D2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
130584259  UBE2D3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
130585241  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
130572213  UBE2E3; ubiquitin-conjugating enzyme E2 E3 isoform X1 [KO:K20217] [EC:2.3.2.23]
130577670  UBE2E1; ubiquitin-conjugating enzyme E2 E1 isoform X1 [KO:K20217] [EC:2.3.2.23]
130577672  ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
130588891  UBE2F; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
130579012  UBE2G1; ubiquitin-conjugating enzyme E2 G1 isoform X1 [KO:K10575] [EC:2.3.2.23]
130582339  UBE2G2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
130587656  UBE2H; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
130576465  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
130584603  UBE2J1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
130587475  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
130576841  UBE2K; ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
130581648  ubiquitin-conjugating enzyme E2 L5-like [KO:K04552] [EC:2.3.2.23]
130582188  UBE2L3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
130586025  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
130581045  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme [KO:K10581] [EC:2.3.2.24]
130575050  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
130576269  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
130583199  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
130580243  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
130573265  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
130587563  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
130572321  UBE2W; ubiquitin-conjugating enzyme E2 W isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
130583958  BIRC6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
130574714  UBE3A; ubiquitin-protein ligase E3A [KO:K10587] [EC:2.3.2.26]
130580502  UBE3B; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
130576413  UBE3C; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
130575160  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
130575710  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
130585931  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
130576433  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
130584782  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 [KO:K05630] [EC:2.3.2.26]
130574000  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
130577029  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
130583855  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
130587469  E3 ubiquitin-protein ligase HUWE1-like [KO:K10592] [EC:2.3.2.26]
130573695  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
130575031  HERC1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
130574720  HERC2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
130573959  HERC3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
130580371  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
130581101  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
130579285  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
130584949  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
130575298  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
130580066  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
130575432  UBOX5; RING finger protein 37 [KO:K10600]
130580165  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
130584689  CBL; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
130578085  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
130576043  PRKN; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
130579099  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
130578096  TRAF6; TNF receptor-associated factor 6 isoform X1 [KO:K03175] [EC:2.3.2.27]
130588760  MAP3K1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
130581517  COP1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
130583144  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
130576282  BIRC2; baculoviral IAP repeat-containing protein 2 isoform X1 [KO:K16060]
130573309  XIAP; E3 ubiquitin-protein ligase XIAP isoform X1 [KO:K04725] [EC:2.3.2.27]
130580669  BIRC7; baculoviral IAP repeat-containing protein 7 isoform X1 [KO:K16061]
130577131  PIAS1; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
130574530  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
130586724  PIAS4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
130573133  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
130585441  autoimmune regulator-like [KO:K10603]
130577216  MGRN1; E3 ubiquitin-protein ligase MGRN1 [KO:K10604] [EC:2.3.2.27]
130581425  BRCA1; breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
130583194  FANCL; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
130588762  MID1; E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
130585174  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
130585517  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
130587945  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
130584535  CUL1; cullin-1 isoform X1 [KO:K03347]
130576572  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
130581567  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
130581747  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
130572771  SKP2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
130582731  F-box/WD repeat-containing protein 7-like isoform X1 [KO:K10260]
130579483  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
130583054  FBXO2; F-box only protein 2 [KO:K10099]
130572794  FBXO4; F-box only protein 4 isoform X1 [KO:K10291]
130576448  CUL2; cullin-2 isoform X1 [KO:K03870]
130572323  ELOC; elongin-C [KO:K03872]
130588082  ELOB; elongin-B isoform X1 [KO:K03873]
130585471  VHL; von Hippel-Lindau disease tumor suppressor [KO:K03871]
130573983  CUL3; cullin-3 [KO:K03869]
130582669  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
130575464  rho-related BTB domain-containing protein 1-like [KO:K07868]
130587229  RHOBTB2; rho-related BTB domain-containing protein 2 [KO:K07868]
130574885  RHOBTB1; rho-related BTB domain-containing protein 1 [KO:K07868]
130589303  CUL4A; cullin-4A isoform X1 [KO:K10609]
130573298  CUL4B; cullin-4B [KO:K10609]
130580111  DDB1; DNA damage-binding protein 1 [KO:K10610]
130572823  DDB2; DNA damage-binding protein 2 [KO:K10140]
130588750  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
130573395  DET1; DET1 homolog [KO:K10571]
130574006  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
130577264  CUL5; cullin-5 isoform X1 [KO:K10612]
130574211  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
130582009  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
130580140  FBXW8; F-box/WD repeat-containing protein 8 [KO:K10264]
130582001  ANAPC11; anaphase-promoting complex subunit 11 isoform X1 [KO:K03358]
130580698  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
130589329  CDC20; cell division cycle protein 20 homolog isoform X1 [KO:K03363]
130579829  FZR1; fizzy-related protein homolog [KO:K03364]
130582837  ANAPC1; anaphase-promoting complex subunit 1 [KO:K03348]
130582469  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
130572983  ANAPC4; anaphase-promoting complex subunit 4 [KO:K03351]
130580357  ANAPC5; anaphase-promoting complex subunit 5 [KO:K03352]
130572195  CDC16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
130580346  ANAPC7; anaphase-promoting complex subunit 7 [KO:K03354]
130587295  anaphase-promoting complex subunit 7 [KO:K03354]
130584355  CDC23; cell division cycle protein 23 homolog [KO:K03355]
130579482  ANAPC10; anaphase-promoting complex subunit 10 [KO:K03357]
130584743  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
130581497  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
130579880  ANAPC15; anaphase-promoting complex subunit 15 [KO:K25228]
130582431  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
mmea03050  Proteasome
KO pathway
ko04120   
LinkDB

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