KEGG   PATHWAY: msam03082
Entry
msam03082                   Pathway                                
Name
ATP-dependent chromatin remodeling - Micropterus salmoides (largemouth bass)
Class
Genetic Information Processing; Chromosome
Pathway map
msam03082  ATP-dependent chromatin remodeling
msam03082

Organism
Micropterus salmoides (largemouth bass) [GN:msam]
Gene
119898865  smarca5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 isoform X1 [KO:K11654] [EC:5.6.2.-]
119909814  baz1a; bromodomain adjacent to zinc finger domain protein 1A [KO:K11655]
119882711  baz1b; tyrosine-protein kinase BAZ1B [KO:K11658]
119905268  baz2a; bromodomain adjacent to zinc finger domain protein 2A [KO:K15224]
119890802  baz2ba; bromodomain adjacent to zinc finger domain protein 2B isoform X1 [KO:K26167]
119904040  bromodomain adjacent to zinc finger domain protein 2B-like isoform X1 [KO:K26167]
119907639  chrac1; chromatin accessibility complex protein 1 [KO:K11656]
119901509  chromatin accessibility complex protein 1-like [KO:K11656]
119890203  pole3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
119883133  rsf1a; remodeling and spacing factor 1 [KO:K11657]
119895265  rsf1b.1; remodeling and spacing factor 1 [KO:K11657]
119899335  nucleosome-remodeling factor subunit BPTF-like isoform X1 [KO:K11728]
119883608  histone-binding protein RBBP7 [KO:K10752]
119884338  histone-binding protein RBBP4 isoform X1 [KO:K10752]
119907592  rbbp4; histone-binding protein RBBP4 [KO:K10752]
119910286  histone-binding protein RBBP4 [KO:K10752]
119913212  zgc:92664; chromatin complexes subunit BAP18 isoform X1 [KO:K23406]
119895648  cunh17orf49; chromatin complexes subunit BAP18 [KO:K23406]
119893178  cat eye syndrome critical region protein 2 isoform X1 [KO:K25830]
119911856  chd3; chromodomain-helicase-DNA-binding protein 3 isoform X1 [KO:K11642] [EC:5.6.2.-]
119897427  chd4b; LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 4 [KO:K11643] [EC:5.6.2.-]
119906551  chd4a; chromodomain-helicase-DNA-binding protein 4a isoform X1 [KO:K11643] [EC:5.6.2.-]
119907183  probable histone deacetylase 1-B [KO:K06067] [EC:3.5.1.98]
119909029  histone deacetylase 2 isoform X1 [KO:K06067] [EC:3.5.1.98]
119910104  probable histone deacetylase 1-B isoform X1 [KO:K06067] [EC:3.5.1.98]
119914148  mbd2; methyl-CpG-binding domain protein 2 isoform X1 [KO:K11590]
119900890  mbd3b; methyl-CpG-binding domain protein 3b isoform X1 [KO:K11591]
119902922  mbd3a; methyl-CpG-binding domain protein 3a [KO:K11591]
119910362  mta1; metastasis-associated protein MTA1 [KO:K11660]
119915818  mta3; metastasis-associated protein MTA3 [KO:K11660]
119912512  mta2; metastasis-associated protein MTA2 [KO:K11660]
119891080  transcriptional repressor p66-alpha-like isoform X1 [KO:K23194]
119906816  gatad2b; transcriptional repressor p66-beta [KO:K23194]
119900927  gatad2ab; GATA zinc finger domain containing 2Ab [KO:K23194]
119902905  transcriptional repressor p66-alpha-like [KO:K23194]
119904306  phf11; uncharacterized protein phf11 isoform X1 [KO:K23310]
119889388  phf6; PHD finger protein 6 [KO:K23310]
119914619  cyclin-dependent kinase 2-associated protein 1 [KO:K26454]
119917837  cyclin-dependent kinase 2-associated protein 1-like [KO:K26454]
119899038  cdk2ap2; cyclin-dependent kinase 2-associated protein 2 [KO:K26455]
119891183  smarca2; LOW QUALITY PROTEIN: probable global transcription activator SNF2L2 [KO:K11647] [EC:5.6.2.-]
119883423  smarca4a; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a isoform X1 [KO:K11647] [EC:5.6.2.-]
119899185  transcription activator BRG1 isoform X1 [KO:K11647] [EC:5.6.2.-]
119892140  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 [KO:K11648]
119914554  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-like [KO:K11648]
119897037  smarcc1a; SWI/SNF complex subunit SMARCC1 isoform X1 [KO:K11649]
119886142  smarcc2; SWI/SNF complex subunit SMARCC2 isoform X1 [KO:K11649]
119907158  smarcc1b; SWI/SNF complex subunit SMARCC1b [KO:K11649]
119903251  SWI/SNF complex subunit SMARCC1-like [KO:K11649]
119911550  smarcd3b; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3b isoform X1 [KO:K11650]
119885999  smarcd1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 isoform X1 [KO:K11650]
119915670  smarcd2; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 [KO:K11650]
119882204  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like isoform X1 [KO:K11651]
119899773  LOW QUALITY PROTEIN: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like [KO:K11651]
119898717  actin, cytoplasmic 2 [KO:K05692]
119898722  actin, cytoplasmic 2 [KO:K05692]
119885147  actb2; actin, cytoplasmic 2 [KO:K05692]
119900654  actl6a; actin-like protein 6A [KO:K11340]
119883154  bcl7bb; B-cell CLL/lymphoma 7 protein family member B-B [KO:K25605]
119914604  bcl7a; B-cell CLL/lymphoma 7 protein family member A [KO:K25605]
119905303  calcium-responsive transactivator-like isoform X1 [KO:K15623]
119902068  ss18; protein SSXT isoform X1 [KO:K15623]
119910359  LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 1B-like [KO:K11653]
119897824  arid1aa; LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 1A [KO:K11653]
119907771  arid1ab; AT-rich interactive domain-containing protein 1A isoform X1 [KO:K11653]
119909364  LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 1B-like [KO:K11653]
119882229  dpf1; LOW QUALITY PROTEIN: zinc finger protein neuro-d4 [KO:K22198]
119910393  zinc finger protein DPF3-like [KO:K22198]
119909186  dpf3; zinc finger protein DPF3 isoform X1 [KO:K22198]
119911250  zinc finger protein ubi-d4 B-like [KO:K13196]
119895053  dpf2; zinc finger protein ubi-d4 isoform X1 [KO:K13196]
119888833  zinc finger protein ubi-d4-like isoform X1 [KO:K13196]
119918043  arid2; AT-rich interactive domain-containing protein 2 [KO:K11765]
119885491  pbrm1l; polybromo 1, like isoform X1 [KO:K11757]
119885943  protein polybromo-1-like isoform X1 [KO:K11757]
119889812  brd7; bromodomain-containing protein 7 isoform X1 [KO:K11723]
119889863  phf10; PHD finger protein 10 [KO:K22197]
119897718  brd9; bromodomain-containing protein 9 [KO:K22184]
119882737  bicra; BRD4-interacting chromatin-remodeling complex-associated protein isoform X1 [KO:K25612]
119884918  bicral; BRD4-interacting chromatin-remodeling complex-associated protein-like [KO:K25613]
119909515  ino80; chromatin-remodeling ATPase INO80 isoform X1 [KO:K11665] [EC:5.6.2.-]
119911292  ino80b; INO80 complex subunit B [KO:K11666]
119897677  ino80c; INO80 complex subunit C [KO:K11667]
119904129  INO80 complex subunit D isoform X1 [KO:K11668]
119897395  ino80e; INO80 complex subunit E isoform X1 [KO:K11669]
119897525  tfpt; TCF3 fusion partner [KO:K11670]
119895416  nfrkb; nuclear factor related to kappa-B-binding protein [KO:K11671]
119886434  mcrs1; microspherule protein 1 isoform X1 [KO:K11674]
119900307  uchl5; ubiquitin carboxyl-terminal hydrolase isozyme L5 [KO:K05610] [EC:3.4.19.12]
119885572  ruvbl1; ruvB-like 1 [KO:K04499] [EC:5.6.2.4]
119895900  ruvbl2; ruvB-like 2 [KO:K11338] [EC:5.6.2.3]
119906127  actr5; actin-related protein 5 [KO:K11672]
119905853  actr8; actin-related protein 8 [KO:K11673]
119908894  yy1b; transcriptional repressor protein YY1b isoform X1 [KO:K09201]
119910069  yy1a; transcriptional repressor protein YY1a [KO:K09201]
119916019  helicase SRCAP [KO:K11661] [EC:5.6.2.-]
119900678  dmap1; DNA methyltransferase 1-associated protein 1 [KO:K11324]
119917952  yeats4; YEATS domain-containing protein 4 [KO:K11341]
119907588  vps72a; vacuolar protein sorting 72 homolog a isoform X1 [KO:K11664]
119891331  histone H2A.V [KO:K11251]
119917287  core histone macro-H2A.2 [KO:K11251]
119883589  histone H2A-like [KO:K11251]
119884585  histone H2A-like [KO:K11251]
119884586  histone H2A-like [KO:K11251]
119885919  histone H2A.J-like [KO:K11251]
119894792  histone H2A-like [KO:K11251]
119894793  histone H2A-like [KO:K11251]
119894794  histone H2A-like [KO:K11251]
119894828  histone H2A-like [KO:K11251]
119894829  histone H2A-like [KO:K11251]
119894888  histone H2A-like [KO:K11251]
119894890  histone H2A-like [KO:K11251]
119894947  histone H2A-like [KO:K11251]
119894948  histone H2A-like [KO:K11251]
119894949  histone H2A-like [KO:K11251]
119901462  histone H2A-like [KO:K11251]
119913275  histone H2A.Z [KO:K11251]
119895107  core histone macro-H2A.1 isoform X1 [KO:K11251]
119895558  histone H2AX [KO:K11251]
119895686  histone H2A [KO:K11251]
119895770  histone H2A-like [KO:K11251]
119896208  histone H2A-like [KO:K11251]
119896448  histone H2A-like [KO:K11251]
119896450  histone H2A-like [KO:K11251]
119896451  histone H2A-like [KO:K11251]
119896452  histone H2A-like [KO:K11251]
119894367  actr6; actin-related protein 6 [KO:K11662]
119912724  zinc finger HIT domain-containing protein 1-like [KO:K11663]
119912726  zinc finger HIT domain-containing protein 1-like [KO:K11663]
119892016  ep400; E1A-binding protein p400 isoform X1 [KO:K11320] [EC:5.6.2.-]
119915668  transformation/transcription domain-associated protein [KO:K08874]
119890510  mortality factor 4-like protein 1 isoform X1 [KO:K11339]
119893995  morf4l1; mortality factor 4-like protein 1 [KO:K11339]
119906077  MRG/MORF4L-binding protein [KO:K11343]
119894973  brd8a; bromodomain-containing protein 8 isoform X1 [KO:K11321]
119888296  brd8b; bromodomain-containing protein 8 isoform X1 [KO:K11321]
119891054  LOW QUALITY PROTEIN: inhibitor of growth protein 3-like [KO:K11319]
119895520  inhibitor of growth protein 3 [KO:K11319]
119903734  epc2; enhancer of polycomb homolog 2 [KO:K11322]
119912701  enhancer of polycomb homolog 1-like isoform X1 [KO:K11322]
119901713  enhancer of polycomb homolog 1-like isoform X1 [KO:K11322]
119909763  meaf6; chromatin modification-related protein MEAF6 isoform X1 [KO:K11344]
119884756  histone acetyltransferase KAT5 [KO:K11304] [EC:2.3.1.48]
119896038  histone acetyltransferase KAT5-like [KO:K11304] [EC:2.3.1.48]
Reference
PMID:31769422
  Authors
Hasan N, Ahuja N
  Title
The Emerging Roles of ATP-Dependent Chromatin Remodeling Complexes in Pancreatic Cancer.
  Journal
Cancers (Basel) 11:cancers11121859 (2019)
DOI:10.3390/cancers11121859
Reference
PMID:32001526
  Authors
He S, Wu Z, Tian Y, Yu Z, Yu J, Wang X, Li J, Liu B, Xu Y
  Title
Structure of nucleosome-bound human BAF complex.
  Journal
Science 367:875-881 (2020)
DOI:10.1126/science.aaz9761
Reference
PMID:33941852
  Authors
Wanior M, Kramer A, Knapp S, Joerger AC
  Title
Exploiting vulnerabilities of SWI/SNF chromatin remodelling complexes for cancer therapy.
  Journal
Oncogene 40:3637-3654 (2021)
DOI:10.1038/s41388-021-01781-x
Reference
PMID:20493981
  Authors
Burgio G, Onorati MC, Corona DF
  Title
Chromatin remodeling regulation by small molecules and metabolites.
  Journal
Biochim Biophys Acta 1799:671-80 (2010)
DOI:10.1016/j.bbagrm.2010.05.007
KO pathway
ko03082   
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