KEGG PATHWAY: pfor04622

KEGG

PATHWAY: pfor04622

Entry

pfor04622                   Pathway

Name

RIG-I-like receptor signaling pathway - Poecilia formosa (Amazon molly)

Description

Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.

Class

Organismal Systems; Immune system

Pathway map

RIG-I-like receptor signaling pathway

Organism

Poecilia formosa (Amazon molly) [GN:pfor]

Gene

ifih1; interferon-induced helicase C domain-containing protein 1 [KO:K12647] [EC:5.6.2.6]

znfx1; NFX1-type zinc finger-containing protein 1 isoform X1 [KO:K27391]

mavs; mitochondrial antiviral-signaling protein [KO:K12648]

dhx58; probable ATP-dependent RNA helicase DHX58 [KO:K12649] [EC:5.6.2.6]

traf3; TNF receptor-associated factor 3 isoform X2 [KO:K03174]

tank; TRAF family member-associated NF-kappa-B activator [KO:K12650]

azi2; 5-azacytidine-induced protein 2 isoform X1 [KO:K12651]

tbkbp1; TANK-binding kinase 1-binding protein 1 [KO:K12652]

ikbkg; NF-kappa-B essential modulator isoform X1 [KO:K07210]

tbk1; serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]

ikbke; inhibitor of nuclear factor kappa-B kinase subunit epsilon [KO:K07211] [EC:2.7.11.10]

uncharacterized protein LOC103156846 [KO:K05411]

irf7; interferon regulatory factor 7 isoform X2 [KO:K09447]

interferon a3-like [KO:K05414]

interferon a3-like [KO:K05414]

interferon a3-like [KO:K05414]

interferon a3-like [KO:K05414]

interferon a3-like [KO:K05414]

tradd; tumor necrosis factor receptor type 1-associated DEATH domain protein [KO:K03171]

fadd; FAS-associated death domain protein isoform X2 [KO:K02373]

ripk1; receptor-interacting serine/threonine-protein kinase 1 [KO:K02861] [EC:2.7.11.1]

caspase-8-like [KO:K04398] [EC:3.4.22.61]

caspase-8-like [KO:K04398] [EC:3.4.22.61]

caspase-8-like [KO:K04398] [EC:3.4.22.61]

inhibitor of nuclear factor kappa-B kinase subunit alpha-like [KO:K04467] [EC:2.7.11.10]

inhibitor of nuclear factor kappa-B kinase subunit alpha-like [KO:K04467] [EC:2.7.11.10]

ikbkb; inhibitor of nuclear factor kappa-B kinase subunit beta [KO:K07209] [EC:2.7.11.10]

nfkbia; NF-kappa-B inhibitor alpha [KO:K04734]

NF-kappa-B inhibitor alpha-like [KO:K04734]

nfkb1; LOW QUALITY PROTEIN: nuclear factor NF-kappa-B p105 subunit [KO:K02580]

transcription factor p65-like isoform X1 [KO:K04735]

TNF receptor-associated factor 2-like [KO:K03173] [EC:2.3.2.27]

TNF receptor-associated factor 2-like isoform X1 [KO:K03173] [EC:2.3.2.27]

traf2; TNF receptor-associated factor 2 isoform X1 [KO:K03173] [EC:2.3.2.27]

map3k7; mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]

mitogen-activated protein kinase kinase kinase 7-like isoform X1 [KO:K04427] [EC:2.7.11.25]

traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]

mitogen-activated protein kinase 8-like isoform X1 [KO:K04440] [EC:2.7.11.24]

mitogen-activated protein kinase 9 isoform X2 [KO:K04440] [EC:2.7.11.24]

mapk10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]

mapk8; mitogen-activated protein kinase 8 isoform X2 [KO:K04440] [EC:2.7.11.24]

mitogen-activated protein kinase 14A isoform X1 [KO:K04441] [EC:2.7.11.24]

mitogen-activated protein kinase 12 [KO:K04441] [EC:2.7.11.24]

mitogen-activated protein kinase 12-like isoform X1 [KO:K04441] [EC:2.7.11.24]

mitogen-activated protein kinase 11 [KO:K04441] [EC:2.7.11.24]

mitogen-activated protein kinase 12-like isoform X1 [KO:K04441] [EC:2.7.11.24]

mitogen-activated protein kinase 11-like [KO:K04441] [EC:2.7.11.24]

mitogen-activated protein kinase 14A-like [KO:K04441] [EC:2.7.11.24]

mitogen-activated protein kinase 14A-like [KO:K04441] [EC:2.7.11.24]

mitogen-activated protein kinase 13 [KO:K04441] [EC:2.7.11.24]

interleukin-8-like [KO:K10030]

permeability factor 2-like [KO:K10030]

tumor necrosis factor-like [KO:K03156]

uncharacterized protein LOC107838033 [KO:K05406]

interleukin-12 subunit alpha-like [KO:K05406]

interleukin-12 subunit beta-like [KO:K05425]

interleukin-12 subunit beta-like isoform X1 [KO:K05425]

interleukin-12 subunit beta-like [KO:K05425]

adar; double-stranded RNA-specific adenosine deaminase [KO:K12968] [EC:3.5.4.37]

tripartite motif-containing protein 16-like [KO:K10652] [EC:2.3.2.27]

E3 ubiquitin/ISG15 ligase TRIM25-like [KO:K10652] [EC:2.3.2.27]

E3 ubiquitin/ISG15 ligase TRIM25-like [KO:K10652] [EC:2.3.2.27]

E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1 [KO:K10652] [EC:2.3.2.27]

E3 ubiquitin/ISG15 ligase TRIM25-like [KO:K10652] [EC:2.3.2.27]

E3 ubiquitin-protein ligase TRIM39-like [KO:K10652] [EC:2.3.2.27]

E3 ubiquitin/ISG15 ligase TRIM25-like [KO:K10652] [EC:2.3.2.27]

tripartite motif-containing protein 16-like isoform X1 [KO:K10652] [EC:2.3.2.27]

tripartite motif-containing protein 16-like [KO:K10652] [EC:2.3.2.27]

cyld; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]

ubiquitin carboxyl-terminal hydrolase CYLD-like isoform X1 [KO:K08601] [EC:3.4.19.12]

ubiquitin carboxyl-terminal hydrolase CYLD-like [KO:K08601] [EC:3.4.19.12]

ubiquitin carboxyl-terminal hydrolase CYLD-like [KO:K08601] [EC:3.4.19.12]

atg5; autophagy protein 5 [KO:K08339]

atg12; ubiquitin-like protein ATG12 [KO:K08336]

nlrx1; NLR family member X1 [KO:K12653]

tmem173; stimulator of interferon genes protein [KO:K12654]

otud5; OTU domain-containing protein 5 isoform X1 [KO:K12655] [EC:3.4.19.12]

sike1; suppressor of IKBKE 1 isoform X2 [KO:K12656]

ddx3x; ATP-dependent RNA helicase DDX3X isoform X9 [KO:K11594] [EC:5.6.2.7]

ATP-dependent RNA helicase DDX3X-like isoform X1 [KO:K11594] [EC:5.6.2.7]

pin1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [KO:K09578] [EC:5.2.1.8]

tkfc; triokinase/FMN cyclase [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]

Compound

RNA

Reference

Authors

Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T

Title

The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.

Journal

Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087

Reference

Authors

Takeuchi O, Akira S

Title

MDA5/RIG-I and virus recognition.

Journal

Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002

Reference

Authors

Yoneyama M, Fujita T

Title

RNA recognition and signal transduction by RIG-I-like receptors.

Journal

Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x

Reference

Authors

Nakhaei P, Genin P, Civas A, Hiscott J

Title

RIG-I-like receptors: sensing and responding to RNA virus infection.

Journal

Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001

Reference

Authors

Moore CB, Ting JP

Title

Regulation of mitochondrial antiviral signaling pathways.

Journal

Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005

Reference

Authors

Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB

Title

Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.

Journal

Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012

Reference

Authors

Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G

Title

Approaching the RNA ligand for RIG-I?

Journal

Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x

Reference

Authors

Saito T, Gale M Jr

Title

Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.

Journal

J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210

Reference

Authors

Kawai T, Akira S

Title

Toll-like receptor and RIG-I-like receptor signaling.

Journal

Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020

Reference

Authors

Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J

Title

TRADD protein is an essential component of the RIG-like helicase antiviral pathway.

Journal

Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013

Reference

Authors

Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T

Title

TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.

Journal

J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200

Reference

Authors

Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR

Title

RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.

Journal

J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200

Reference

Authors

Liu G, Gack MU

Title

Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.

Journal

Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017

Related
pathway

MAPK signaling pathway

Ubiquitin mediated proteolysis

Apoptosis

KO pathway

LinkDB

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