KEGG   PATHWAY: plop04146
Entry
plop04146                   Pathway                                
Name
Peroxisome - Perognathus longimembris pacificus (Pacific pocket mouse)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
plop04146  Peroxisome
plop04146

Other DBs
GO: 0005777
Organism
Perognathus longimembris pacificus (Pacific pocket mouse) [GN:plop]
Gene
125361237  Pex16; peroxisomal biogenesis factor 16 [KO:K13335]
125357359  Pex3; peroxisomal biogenesis factor 3 [KO:K13336]
125359099  Pex19; peroxisomal biogenesis factor 19 isoform X1 [KO:K13337]
125355566  Abcd3; ATP-binding cassette sub-family D member 3 isoform X1 [KO:K05677] [EC:7.6.2.4]
125346998  Pex1; peroxisome biogenesis factor 1 [KO:K13338]
125352572  Pex6; peroxisome biogenesis factor 6 isoform X1 [KO:K13339]
125342874  Pex26; peroxisome assembly protein 26 [KO:K13340]
125357324  Pex7; peroxisomal biogenesis factor 7 isoform X1 [KO:K13341]
125351943  Pex5l; PEX5-related protein isoform X1 [KO:K13342]
125354562  Pex14; peroxisomal membrane protein PEX14 isoform X1 [KO:K13343]
125356418  Pex13; peroxisome biogenesis factor 13 [KO:K13344]
125365668  Pex12; peroxisome assembly protein 12 isoform X1 [KO:K13345]
125354480  Pex10; peroxisome biogenesis factor 10 [KO:K13346]
125360688  Pex2; peroxisome biogenesis factor 2 [KO:K06664]
125349246  Pxmp2; peroxisomal membrane protein 2 [KO:K13347]
125348919  Mpv17l2; mpv17-like protein 2 [KO:K13348]
125356638  Mpv17; protein Mpv17 [KO:K13348]
125341204  Mpv17l; LOW QUALITY PROTEIN: mpv17-like protein [KO:K13349]
125353383  Pxmp4; peroxisomal membrane protein 4 [KO:K13350]
125338701  Pex11a; peroxisomal membrane protein 11A [KO:K13351]
125355515  Pex11b; peroxisomal membrane protein 11B [KO:K13352]
125348704  Pex11g; peroxisomal membrane protein 11C isoform X1 [KO:K13353]
125358058  Slc25a17; peroxisomal membrane protein PMP34 isoform X1 [KO:K13354]
125358624  Hacl1; 2-hydroxyacyl-CoA lyase 1 [KO:K12261] [EC:4.1.2.63]
125367471  Amacr; alpha-methylacyl-CoA racemase [KO:K01796] [EC:5.1.99.4]
125367113  phytanoyl-CoA dioxygenase, peroxisomal-like [KO:K00477] [EC:1.14.11.18]
125364772  Acox3; LOW QUALITY PROTEIN: peroxisomal acyl-coenzyme A oxidase 3 [KO:K00232] [EC:1.3.3.6]
125366035  Acox1; peroxisomal acyl-coenzyme A oxidase 1 isoform X1 [KO:K00232] [EC:1.3.3.6]
125358690  Acox2; peroxisomal acyl-coenzyme A oxidase 2 [KO:K10214] [EC:1.17.99.3]
125341824  Hsd17b4; peroxisomal multifunctional enzyme type 2 [KO:K12405] [EC:1.1.1.- 4.2.1.107 4.2.1.119]
125355169  Scp2; sterol carrier protein 2 [KO:K08764] [EC:2.3.1.176]
125356113  acyl-coenzyme A amino acid N-acyltransferase 2-like [KO:K00659] [EC:2.3.1.65 3.1.2.2]
125346048  bile acid-CoA:amino acid N-acyltransferase-like [KO:K00659] [EC:2.3.1.65 3.1.2.2]
125351917  peroxisomal bifunctional enzyme-like [KO:K07514] [EC:4.2.1.17 1.1.1.35 5.3.3.8]
125342410  Acaa1; 3-ketoacyl-CoA thiolase, peroxisomal isoform X1 [KO:K07513] [EC:2.3.1.16]
125345115  3-ketoacyl-CoA thiolase B, peroxisomal-like [KO:K07513] [EC:2.3.1.16]
125340748  Decr2; peroxisomal 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing] [KO:K13237] [EC:1.3.1.124]
125338830  delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial-like [KO:K12663] [EC:5.3.3.21]
125338629  delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial-like [KO:K12663] [EC:5.3.3.21]
125343652  Abcd1; ATP-binding cassette sub-family D member 1 [KO:K05675] [EC:7.6.2.4]
125366058  Abcd2; ATP-binding cassette sub-family D member 2 isoform X1 [KO:K05676] [EC:7.6.2.4]
125363166  Abcd4; lysosomal cobalamin transporter ABCD4 isoform X1 [KO:K05678] [EC:7.6.2.8]
125340283  Slc27a2; very long-chain acyl-CoA synthetase [KO:K08746] [EC:6.2.1.- 6.2.1.3]
125339646  Acsl1; long-chain-fatty-acid--CoA ligase 1 isoform X1 [KO:K01897] [EC:6.2.1.3]
125342052  Acsl6; long-chain-fatty-acid--CoA ligase 6 [KO:K01897] [EC:6.2.1.3]
125350256  Acsl3; fatty acid CoA ligase Acsl3 [KO:K01897] [EC:6.2.1.3]
125343258  Acsl4; long-chain-fatty-acid--CoA ligase 4 isoform X1 [KO:K01897] [EC:6.2.1.3]
125346058  Acsl5; long-chain-fatty-acid--CoA ligase 5 [KO:K01897] [EC:6.2.1.3]
125350328  Pecr; peroxisomal trans-2-enoyl-CoA reductase isoform X1 [KO:K07753] [EC:1.3.1.38]
125353073  Eci2; enoyl-CoA delta isomerase 2 isoform X1 [KO:K13239] [EC:5.3.3.8]
125358162  Nudt7; peroxisomal coenzyme A diphosphatase NUDT7 [KO:K17879] [EC:3.6.1.77]
125340022  Nudt12; NAD-capped RNA hydrolase NUDT12 [KO:K03426] [EC:3.6.1.22]
125346449  Nudt13; NAD(P)H pyrophosphatase NUDT13, mitochondrial isoform X1 [KO:K03426] [EC:3.6.1.22]
125338746  Nudt19; acyl-coenzyme A diphosphatase NUDT19 [KO:K13355] [EC:3.6.1.77]
125350858  acyl-coenzyme A diphosphatase NUDT19-like [KO:K13355] [EC:3.6.1.77]
125353839  Acot8; acyl-coenzyme A thioesterase 8 [KO:K11992] [EC:3.1.2.27]
125350200  Crat; carnitine O-acetyltransferase isoform X1 [KO:K00624] [EC:2.3.1.7]
125346966  Crot; peroxisomal carnitine O-octanoyltransferase isoform X1 [KO:K05940] [EC:2.3.1.137]
125358131  Mlycd; malonyl-CoA decarboxylase, mitochondrial [KO:K01578] [EC:4.1.1.9]
125366817  Gnpat; dihydroxyacetone phosphate acyltransferase isoform X1 [KO:K00649] [EC:2.3.1.42]
125350521  Agps; alkyldihydroxyacetonephosphate synthase, peroxisomal [KO:K00803] [EC:2.5.1.26]
125362740  Far1; fatty acyl-CoA reductase 1 isoform X1 [KO:K13356] [EC:1.2.1.84]
125366294  Far2; fatty acyl-CoA reductase 2 [KO:K13356] [EC:1.2.1.84]
125349029  Mvk; mevalonate kinase isoform X1 [KO:K00869] [EC:2.7.1.36]
125359880  Pmvk; phosphomevalonate kinase [KO:K13273] [EC:2.7.4.2]
125349017  Dao; D-amino-acid oxidase isoform X1 [KO:K00273] [EC:1.4.3.3]
125357054  Ddo; D-aspartate oxidase isoform X1 [KO:K00272] [EC:1.4.3.1]
125367898  Idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
125350346  Idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
125345917  Paox; peroxisomal N(1)-acetyl-spermine/spermidine oxidase isoform X1 [KO:K00308] [EC:1.5.3.13]
125365488  Pipox; peroxisomal sarcosine oxidase [KO:K00306] [EC:1.5.3.1 1.5.3.7]
125354717  Hmgcl; hydroxymethylglutaryl-CoA lyase, mitochondrial isoform X1 [KO:K01640] [EC:4.1.3.4]
125352474  Hmgcll1; 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic [KO:K01640] [EC:4.1.3.4]
125355480  2-Hydroxyacid oxidase 2-like isoform X1 [KO:K11517] [EC:1.1.3.15]
125355482  2-Hydroxyacid oxidase 2-like isoform X1 [KO:K11517] [EC:1.1.3.15]
125344740  2-Hydroxyacid oxidase 2-like isoform X1 [KO:K11517] [EC:1.1.3.15]
125345250  2-Hydroxyacid oxidase 2-like isoform X1 [KO:K11517] [EC:1.1.3.15]
125345255  2-Hydroxyacid oxidase 2-like isoform X1 [KO:K11517] [EC:1.1.3.15]
125352326  Hao1; 2-Hydroxyacid oxidase 1 [KO:K11517] [EC:1.1.3.15]
125362305  Cat; catalase [KO:K03781] [EC:1.11.1.6]
125361409  Prdx5; peroxiredoxin-5, mitochondrial [KO:K11187] [EC:1.11.1.24]
125351519  Sod1; superoxide dismutase [Cu-Zn] [KO:K04565] [EC:1.15.1.1]
125357462  Sod2; superoxide dismutase [Mn], mitochondrial isoform X1 [KO:K04564] [EC:1.15.1.1]
125365394  Nos2; nitric oxide synthase, inducible [KO:K13241] [EC:1.14.13.39]
125355080  Prdx1; peroxiredoxin-1 [KO:K13279] [EC:1.11.1.24]
125357155  peroxiredoxin-1-like [KO:K13279] [EC:1.11.1.24]
125339453  Ephx2; bifunctional epoxide hydrolase 2 [KO:K08726] [EC:3.3.2.10 3.1.3.76]
125347261  Gstk1; glutathione S-transferase kappa 1 [KO:K13299] [EC:2.5.1.18]
125356586  Xdh; xanthine dehydrogenase/oxidase [KO:K00106] [EC:1.17.1.4 1.17.3.2]
125363499  dehydrogenase/reductase SDR family member 4 [KO:K11147] [EC:1.1.-.-]
125345051  dehydrogenase/reductase SDR family member 4 [KO:K11147] [EC:1.1.-.-]
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
plop00071  Fatty acid degradation
plop00120  Primary bile acid biosynthesis
plop00230  Purine metabolism
plop00564  Glycerophospholipid metabolism
plop00565  Ether lipid metabolism
plop00830  Retinol metabolism
plop00900  Terpenoid backbone biosynthesis
plop03320  PPAR signaling pathway
KO pathway
ko04146   
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