KEGG PATHWAY: ppuj00270

PATHWAY: ppuj00270

Entry

ppuj00270                   Pathway

Name

Cysteine and methionine metabolism - Pectobacterium punjabense

Description

Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].

Class

Metabolism; Amino acid metabolism

Pathway map

ppuj00270

Cysteine and methionine metabolism

Module

ppuj_M00017

Methionine biosynthesis, aspartate => homoserine => methionine [PATH:ppuj00270]

ppuj_M00021

Cysteine biosynthesis, serine => cysteine [PATH:ppuj00270]

ppuj_M00034

Methionine salvage pathway [PATH:ppuj00270]

Other DBs

GO:	0006534 0006555

Organism

Pectobacterium punjabense [GN:ppuj]

Gene

E2566_20630

cysE; serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]

E2566_04290

cysK; cysteine synthase A [KO:K01738] [EC:2.5.1.47]

E2566_05960

PLP-dependent cysteine synthase family protein [KO:K01738] [EC:2.5.1.47]

E2566_02000

metC; cystathionine beta-lyase [KO:K01760] [EC:4.4.1.13]

E2566_02360

metC; cystathionine beta-lyase [KO:K01760] [EC:4.4.1.13]

E2566_19815

cysteine synthase family protein [KO:K01697] [EC:4.2.1.22]

E2566_08485

mmuM; homocysteine S-methyltransferase [KO:K00547] [EC:2.1.1.10]

E2566_19145

metH; methionine synthase [KO:K00548] [EC:2.1.1.13]

E2566_20610

metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase [KO:K00549] [EC:2.1.1.14]

E2566_15030

methionine synthase [KO:K00549] [EC:2.1.1.14]

E2566_18750

metK; methionine adenosyltransferase [KO:K00789] [EC:2.5.1.6]

E2566_16150

speD; adenosylmethionine decarboxylase [KO:K01611] [EC:4.1.1.50]

E2566_16145

speE; polyamine aminopropyltransferase [KO:K00797] [EC:2.5.1.16]

E2566_21030

acyl-homoserine-lactone synthase [KO:K22956] [EC:2.3.1.184]

E2566_15995

mtnN; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [KO:K01243] [EC:3.2.2.9]

E2566_16590

S-methyl-5-thioribose kinase [KO:K00899] [EC:2.7.1.100]

E2566_16245

pgeF; polyphenol oxidase [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]

E2566_16595

mtnA; S-methyl-5-thioribose-1-phosphate isomerase [KO:K08963] [EC:5.3.1.23]

E2566_16615

methylthioribulose 1-phosphate dehydratase [KO:K08964] [EC:4.2.1.109]

E2566_16610

mtnC; acireductone synthase [KO:K09880] [EC:3.1.3.77]

E2566_14180

cupin domain-containing protein [KO:K08967] [EC:1.13.11.53 1.13.11.54]

E2566_16605

acireductone dioxygenase [KO:K08967] [EC:1.13.11.53 1.13.11.54]

E2566_17605

aspartate/tyrosine/aromatic aminotransferase [KO:K00832] [EC:2.6.1.57]

E2566_09920

GAF domain-containing protein [KO:K08968] [EC:1.8.4.14]

E2566_13725

dcm; DNA (cytosine-5-)-methyltransferase [KO:K00558] [EC:2.1.1.37]

E2566_16330

luxS; S-ribosylhomocysteine lyase [KO:K07173] [EC:4.4.1.21]

E2566_19115

lysC; lysine-sensitive aspartokinase 3 [KO:K00928] [EC:2.7.2.4]

E2566_18545

thrA; bifunctional aspartate kinase/homoserine dehydrogenase I [KO:K12524] [EC:2.7.2.4 1.1.1.3]

E2566_00835

bifunctional aspartate kinase/homoserine dehydrogenase II [KO:K12525] [EC:2.7.2.4 1.1.1.3]

E2566_20055

asd; aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]

E2566_18540

thrB; homoserine kinase [KO:K00872] [EC:2.7.1.39]

E2566_19175

metA; homoserine O-succinyltransferase [KO:K00651] [EC:2.3.1.46 2.3.1.31]

E2566_02240

alpha/beta fold hydrolase [KO:K00641] [EC:2.3.1.31 2.3.1.46]

E2566_00830

metB; cystathionine gamma-synthase [KO:K01739] [EC:2.5.1.48]

E2566_04005

aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [KO:K01740] [EC:2.5.1.49]

E2566_00995

branched-chain amino acid transaminase [KO:K00826] [EC:2.6.1.42]

E2566_14125

aminotransferase class IV [KO:K00826] [EC:2.6.1.42]

E2566_16335

glutamate--cysteine ligase [KO:K01919] [EC:6.3.2.2]

E2566_18770

gshB; glutathione synthase [KO:K01920] [EC:6.3.2.3]

E2566_09560

aspartate/tyrosine/aromatic aminotransferase [KO:K00813] [EC:2.6.1.1]

E2566_15580

sseA; 3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]

E2566_06515

aspartate/glutamate racemase family protein [KO:K25316] [EC:5.1.1.10]

E2566_03350

mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]

E2566_10305

sdaA; L-serine ammonia-lyase [KO:K01752] [EC:4.3.1.17]

E2566_15190

L-serine ammonia-lyase [KO:K01752] [EC:4.3.1.17]

E2566_04245

cysM; cysteine synthase CysM [KO:K12339] [EC:2.5.1.144]

E2566_18615

serA; phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]

E2566_09300

serC; 3-phosphoserine/phosphohydroxythreonine transaminase [KO:K00831] [EC:2.6.1.52]

Compound

C00019

S-Adenosyl-L-methionine

C00021

S-Adenosyl-L-homocysteine

C00022

Pyruvate

C00041

L-Alanine

C00049

L-Aspartate

C00051

Glutathione

C00059

Sulfate

C00065

L-Serine

C00073

L-Methionine

C00094

Sulfite

C00097

L-Cysteine

C00109

2-Oxobutanoate

C00155

L-Homocysteine

C00170

5'-Methylthioadenosine

C00197

3-Phospho-D-glycerate

C00263

L-Homoserine

C00283

Hydrogen sulfide

C00409

Methanethiol

C00441

L-Aspartate 4-semialdehyde

C00491

L-Cystine

C00506

L-Cysteate

C00606

3-Sulfino-L-alanine

C00793

D-Cysteine

C00957

Mercaptopyruvate

C00979

O-Acetyl-L-serine

C01005

O-Phospho-L-serine

C01077

O-Acetyl-L-homoserine

C01102

O-Phospho-L-homoserine

C01118

O-Succinyl-L-homoserine

C01137

S-Adenosylmethioninamine

C01180

4-Methylthio-2-oxobutanoic acid

C01234

1-Aminocyclopropane-1-carboxylate

C01817

L-Homocystine

C01962

Thiocysteine

C02218

Dehydroalanine

C02291

L-Cystathionine

C02356

(S)-2-Aminobutanoate

C02989

L-Methionine S-oxide

C03082

4-Phospho-L-aspartate

C03089

5-Methylthio-D-ribose

C03145

N-Formylmethionine

C03232

3-Phosphonooxypyruvate

C03431

S-Inosyl-L-homocysteine

C03539

S-Ribosyl-L-homocysteine

C04188

S-Methyl-5-thio-D-ribose 1-phosphate

C04582

S-Methyl-5-thio-D-ribulose 1-phosphate

C05324

Nicotianamine

C05524

Aminoacyl-L-methionine

C05526

S-Glutathionyl-L-cysteine

C05527

3-Sulfinylpyruvate

C05528

3-Sulfopyruvate

C05823

3-Mercaptolactate

C05824

S-Sulfo-L-cysteine

C06547

Ethylene

C08276

3-(Methylthio)propanoate

C09306

Sulfur dioxide

C11437

1-Deoxy-D-xylulose 5-phosphate

C11481

HSO3-

C11499

(S)-3-Sulfolactate

C11537

(2R)-3-Sulfolactate

C15606

1,2-Dihydroxy-5-(methylthio)pent-1-en-3-one

C15650

2,3-Diketo-5-methylthiopentyl-1-phosphate

C15651

2-Hydroxy-3-keto-5-methylthiopentenyl-1-phosphate

C18049

N-Acyl-L-homoserine lactone

C19787

5'-S-Methyl-5'-thioinosine

C21015

gamma-L-Glutamyl-L-2-aminobutyrate

C21016

Ophthalmate

C22359

S-Methyl-1-thio-D-xylulose 5-phosphate

Reference

PMID:15102328

Authors

Sekowska A, Denervaud V, Ashida H, Michoud K, Haas D, Yokota A, Danchin A

Title

Bacterial variations on the methionine salvage pathway.

Journal

BMC Microbiol 4:9 (2004)
DOI:10.1186/1471-2180-4-9

Reference

PMID:14551435

Authors

Ashida H, Saito Y, Kojima C, Kobayashi K, Ogasawara N, Yokota A.

Title

A functional link between RuBisCO-like protein of Bacillus and photosynthetic RuBisCO.

Journal

Science 302:286-90 (2003)
DOI:10.1126/science.1086997

Reference

PMID:12022921

Authors

Sekowska A, Danchin A.

Title

The methionine salvage pathway in Bacillus subtilis.

Journal

BMC Microbiol 2:8 (2002)
DOI:10.1186/1471-2180-2-8

Reference

PMID:12670965

Authors

Berger BJ, English S, Chan G, Knodel MH.

Title

Methionine regeneration and aminotransferases in Bacillus subtilis, Bacillus cereus, and Bacillus anthracis.

Journal

J Bacteriol 185:2418-31 (2003)
DOI:10.1128/JB.185.8.2418-2431.2003

Reference

PMID:17169919

Authors

Goyer A, Collakova E, Shachar-Hill Y, Hanson AD

Title

Functional characterization of a methionine gamma-lyase in Arabidopsis and its implication in an alternative to the reverse trans-sulfuration pathway.

Journal

Plant Cell Physiol 48:232-42 (2007)
DOI:10.1093/pcp/pcl055

Reference

PMID:17030798

Authors

Rebeille F, Jabrin S, Bligny R, Loizeau K, Gambonnet B, Van Wilder V, Douce R, Ravanel S

Title

Methionine catabolism in Arabidopsis cells is initiated by a gamma-cleavage process and leads to S-methylcysteine and isoleucine syntheses.

Journal

Proc Natl Acad Sci U S A 103:15687-92 (2006)
DOI:10.1073/pnas.0606195103

Reference

PMID:18625006

Authors

Pirkov I, Norbeck J, Gustafsson L, Albers E

Title

A complete inventory of all enzymes in the eukaryotic methionine salvage pathway.

Journal

FEBS J 275:4111-20 (2008)
DOI:10.1111/j.1742-4658.2008.06552.x

Reference

PMID:18391471

Authors

Ashida H, Saito Y, Kojima C, Yokota A

Title

Enzymatic characterization of 5-methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway in Bacillus subtilis.

Journal

Biosci Biotechnol Biochem 72:959-67 (2008)
DOI:10.1271/bbb.70651

Reference

PMID:10613873

Authors

Kitabatake M, So MW, Tumbula DL, Soll D

Title

Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?

Journal

J Bacteriol 182:143-5 (2000)
DOI:10.1128/JB.182.1.143-145.2000

Reference

PMID:12644499

Authors

Mino K, Ishikawa K

Title

Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.

Journal

J Bacteriol 185:2277-84 (2003)
DOI:10.1128/JB.185.7.2277-2284.2003

Reference

PMID:18520135

Authors

Tanabe S

Title

Development of assay methods for endogenous inorganic sulfur compounds and sulfurtransferases and evaluation of the physiological functions of bound sulfur.

Journal

Yakugaku Zasshi 128:881-900 (2008)
DOI:10.1248/yakushi.128.881

Reference

Authors

Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).

Title

[Cellular Functions and Metabolic Maps] (In Japanese)

Journal

Tokyo Kagaku Dojin (1997)

Reference

PMID:19270684

Authors