KEGG   PATHWAY: ray04120
Entry
ray04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Rousettus aegyptiacus (Egyptian rousette)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
ray04120  Ubiquitin mediated proteolysis
ray04120

Other DBs
GO: 0016567
Organism
Rousettus aegyptiacus (Egyptian rousette) [GN:ray]
Gene
107511054  UBB; polyubiquitin-B [KO:K04551]
107503736  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
107503842  LOW QUALITY PROTEIN: ubiquitin-like [KO:K02927]
107519689  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
107497131  ubiquitin-60S ribosomal protein L40-like [KO:K02977]
107504733  LOW QUALITY PROTEIN: ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
107504734  LOW QUALITY PROTEIN: ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
107508185  ubiquitin-like modifier-activating enzyme 1 isoform X1 [KO:K03178] [EC:6.2.1.45]
107510026  ubiquitin-like modifier-activating enzyme 1 isoform X1 [KO:K03178] [EC:6.2.1.45]
107501538  UBA1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
107516009  SAE1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
107521419  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
107497447  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
107513363  UBA7; ubiquitin-like modifier-activating enzyme 7 isoform X1 [KO:K10698] [EC:6.2.1.45]
107520512  UBA6; ubiquitin-like modifier-activating enzyme 6 isoform X1 [KO:K10699] [EC:6.2.1.45]
107506638  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
107506802  UBE2B; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
107514597  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
107521568  UBE2D2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
107517894  UBE2D3; ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
107501473  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
107520627  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
107500041  ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
107500063  ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
107510598  UBE2F; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
107507665  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
107510209  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
107512810  UBE2H; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
107506096  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
107508661  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
107510708  UBE2J2; ubiquitin-conjugating enzyme E2 J2 isoform X1 [KO:K04554] [EC:2.3.2.23]
107497761  UBE2K; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
107497851  UBE2L3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
107518415  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 [KO:K04553] [EC:2.3.2.23]
107500478  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
107517185  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
107502221  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme [KO:K10581] [EC:2.3.2.24]
107518893  UBE2QL1; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
107504714  UBE2Q1; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
107500513  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
107502750  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
107500949  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
107515422  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
107508520  UBE2U; ubiquitin-conjugating enzyme E2 U [KO:K10584] [EC:2.3.2.23]
107515180  UBE2W; ubiquitin-conjugating enzyme E2 W isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
107517602  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
107505747  BIRC6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
107515751  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
107500126  UBE3B; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
107518875  UBE3C; ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
107502145  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
107517498  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
107519483  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
107514922  WWP1; LOW QUALITY PROTEIN: NEDD4-like E3 ubiquitin-protein ligase WWP1 [KO:K05633] [EC:2.3.2.26]
107511918  WWP2; LOW QUALITY PROTEIN: NEDD4-like E3 ubiquitin-protein ligase WWP2 [KO:K05630] [EC:2.3.2.26]
107504957  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
107517544  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
107502178  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
107506611  HUWE1; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase HUWE1 [KO:K10592] [EC:2.3.2.26]
107512221  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
107508989  HERC1; LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC1 [KO:K10594] [EC:2.3.2.26]
107505085  LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
107518933  HERC3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
107501302  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
107502261  UBE4A; ubiquitin conjugation factor E4 A isoform X1 [KO:K10596] [EC:2.3.2.27]
107520156  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
107506115  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
107497853  PPIL2; peptidyl-prolyl cis-trans isomerase-like 2 [KO:K10598] [EC:5.2.1.8]
107497348  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
107509942  UBOX5; RING finger protein 37 isoform X1 [KO:K10600]
107512674  MDM2; E3 ubiquitin-protein ligase Mdm2 [KO:K06643] [EC:2.3.2.27]
107507930  CBL; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
107514119  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
107505697  LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase CBL-C-like [KO:K22518] [EC:2.3.2.27]
107501685  PARK2; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
107512258  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
107500111  PML; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
107499247  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
107518617  MAP3K1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
107515509  RFWD2; E3 ubiquitin-protein ligase RFWD2 isoform X1 [KO:K10143] [EC:2.3.2.27]
107515308  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
107504640  baculoviral IAP repeat-containing protein 3-like [KO:K16060]
107504641  BIRC2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
107497750  XIAP; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
107505775  BIRC7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
107508929  PIAS1; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
107512656  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
107509986  PIAS3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
107510627  PIAS4; LOW QUALITY PROTEIN: E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
107497502  SYVN1; E3 ubiquitin-protein ligase synoviolin isoform X1 [KO:K10601] [EC:2.3.2.27]
107516284  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
107510160  AIRE; autoimmune regulator [KO:K10603]
107521681  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
107513858  BRCA1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
107520915  FANCL; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
107508372  MID1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
107514485  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
107499155  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
107519712  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
107500535  CUL1; cullin-1 isoform X1 [KO:K03347]
107506799  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
107511023  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
107497788  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
107509711  SKP2; S-phase kinase-associated protein 2 [KO:K03875]
107510750  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
107513118  FBXO2; F-box only protein 2 [KO:K10099]
107505378  FBXO4; F-box only protein 4 isoform X1 [KO:K10291]
107520742  CUL2; cullin-2 isoform X1 [KO:K03870]
107515179  TCEB1; transcription elongation factor B polypeptide 1 isoform X1 [KO:K03872]
107498764  TCEB2; transcription elongation factor B polypeptide 2 [KO:K03873]
107498366  VHL; von Hippel-Lindau disease tumor suppressor isoform X1 [KO:K03871]
107499070  CUL3; cullin-3 isoform X1 [KO:K03869]
107515092  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
107518600  KLHL9; kelch-like protein 9 [KO:K10447]
107506668  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
107501468  RHOBTB1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
107509217  RHOBTB2; rho-related BTB domain-containing protein 2 [KO:K07868]
107514336  CUL4A; cullin-4A isoform X1 [KO:K10609]
107498678  CUL4B; cullin-4B isoform X1 [KO:K10609]
107504749  DDB1; DNA damage-binding protein 1 [KO:K10610]
107511851  DDB2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
107506373  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
107514178  DET1; DET1 homolog [KO:K10571]
107509411  RNF7; RING-box protein 2 [KO:K10611]
107518685  CUL5; cullin-5 isoform X1 [KO:K10612]
107518217  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
107510063  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
107501925  CUL7; LOW QUALITY PROTEIN: cullin-7 [KO:K10613]
107513156  FBXW8; F-box/WD repeat-containing protein 8 isoform X1 [KO:K10264]
107520272  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
107503100  ANAPC2; anaphase-promoting complex subunit 2 isoform X1 [KO:K03349]
107499504  CDC20; cell division cycle protein 20 homolog [KO:K03363]
107520110  FZR1; fizzy-related protein homolog [KO:K03364]
107509936  ANAPC1; anaphase-promoting complex subunit 1 [KO:K03348]
107508179  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
107515713  ANAPC4; anaphase-promoting complex subunit 4 [KO:K03351]
107515244  ANAPC5; anaphase-promoting complex subunit 5 [KO:K03352]
107514354  CDC16; cell division cycle protein 16 homolog [KO:K03353]
107513236  ANAPC7; anaphase-promoting complex subunit 7 isoform X1 [KO:K03354]
107518724  CDC23; cell division cycle protein 23 homolog [KO:K03355]
107520347  ANAPC10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
107500750  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
107508490  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
107517377  ANAPC15; anaphase-promoting complex subunit 15 [KO:K25228]
107519515  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
ray03050  Proteasome
KO pathway
ko04120   
LinkDB

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