KEGG   PATHWAY: scam04622
Entry
scam04622                   Pathway                                
Name
RIG-I-like receptor signaling pathway - Struthio camelus australis (South African ostrich)
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
scam04622  RIG-I-like receptor signaling pathway
scam04622

Organism
Struthio camelus australis (South African ostrich) [GN:scam]
Gene
104145884  DDX58; probable ATP-dependent RNA helicase DDX58 [KO:K12646] [EC:5.6.2.6]
104144923  IFIH1; interferon-induced helicase C domain-containing protein 1 isoform X1 [KO:K12647] [EC:5.6.2.6]
104143165  ZNFX1; NFX1-type zinc finger-containing protein 1 [KO:K27391]
104148594  uncharacterized protein LOC104148594 [KO:K12648]
104152415  DHX58; probable ATP-dependent RNA helicase DHX58 [KO:K12649] [EC:5.6.2.6]
104144466  TRAF3; TNF receptor-associated factor 3 [KO:K03174]
104144915  TANK; TRAF family member-associated NF-kappa-B activator [KO:K12650]
104152537  AZI2; 5-azacytidine-induced protein 2 [KO:K12651]
104142062  TBK1; serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]
104142394  IKBKE; inhibitor of nuclear factor kappa-B kinase subunit epsilon [KO:K07211] [EC:2.7.11.10]
104145483  IFNB1; interferon beta [KO:K05414]
104147423  interferon alpha-2-like [KO:K05414]
104152576  interferon type B-like [KO:K05415]
104146290  TRADD; tumor necrosis factor receptor type 1-associated DEATH domain protein [KO:K03171]
104146121  RIPK1; receptor-interacting serine/threonine-protein kinase 1 [KO:K02861] [EC:2.7.11.1]
104150167  CASP8; caspase-8 [KO:K04398] [EC:3.4.22.61]
104150169  caspase-8-like [KO:K04398] [EC:3.4.22.61]
104150168  caspase-10-like [KO:K04400] [EC:3.4.22.63]
104149540  CHUK; inhibitor of nuclear factor kappa-B kinase subunit alpha isoform X1 [KO:K04467] [EC:2.7.11.10]
104148759  IKBKB; inhibitor of nuclear factor kappa-B kinase subunit beta [KO:K07209] [EC:2.7.11.10]
104141593  NFKBIA; NF-kappa-B inhibitor alpha [KO:K04734]
104153443  NFKB1; nuclear factor NF-kappa-B p105 subunit isoform X1 [KO:K02580]
104139746  TRAF2; TNF receptor-associated factor 2 isoform X1 [KO:K03173] [EC:2.3.2.27]
104144138  MAP3K7; mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]
104152881  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
104146859  MAP3K1; LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
104142382  MAPK9; mitogen-activated protein kinase 9 isoform X1 [KO:K04440] [EC:2.7.11.24]
104145156  MAPK10; mitogen-activated protein kinase 10 [KO:K04440] [EC:2.7.11.24]
104146010  MAPK8; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
104151524  MAPK11; mitogen-activated protein kinase 11 [KO:K04441] [EC:2.7.11.24]
104151532  MAPK12; mitogen-activated protein kinase 12 [KO:K04441] [EC:2.7.11.24]
104139401  MAPK13; mitogen-activated protein kinase 13 [KO:K04441] [EC:2.7.11.24]
104139403  MAPK14; mitogen-activated protein kinase 14 [KO:K04441] [EC:2.7.11.24]
104149933  growth-regulated alpha protein-like [KO:K10030]
104149934  LOW QUALITY PROTEIN: interleukin-8-like [KO:K10030]
104149945  interleukin-8-like [KO:K10030]
104140049  IL12A; interleukin-12 subunit alpha [KO:K05406]
104151047  IL12B; interleukin-12 subunit beta [KO:K05425]
104141639  ADAR; double-stranded RNA-specific adenosine deaminase [KO:K12968] [EC:3.5.4.37]
104146817  TRIM25; LOW QUALITY PROTEIN: E3 ubiquitin/ISG15 ligase TRIM25 [KO:K10652] [EC:2.3.2.27]
104142511  ubiquitin carboxyl-terminal hydrolase CYLD-like isoform X1 [KO:K08601] [EC:3.4.19.12]
104146322  CYLD; LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase CYLD [KO:K08601] [EC:3.4.19.12]
104149471  RNF125; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RNF125 [KO:K12170] [EC:2.3.2.27]
104145414  ATG5; autophagy protein 5 isoform X1 [KO:K08339]
104150996  ATG12; ubiquitin-like protein ATG12 [KO:K08336]
104141122  NLRX1; NLR family member X1 [KO:K12653]
104150480  TMEM173; stimulator of interferon genes protein [KO:K12654]
104142364  SIKE1; suppressor of IKBKE 1 [KO:K12656]
104152698  DDX3X; ATP-dependent RNA helicase DDX3X [KO:K11594] [EC:5.6.2.7]
104153914  PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [KO:K09578] [EC:5.2.1.8]
104141555  DAK; bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing) [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
scam04010  MAPK signaling pathway
scam04120  Ubiquitin mediated proteolysis
scam04210  Apoptosis
KO pathway
ko04622   
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