Entry
Name
Lysosome - Salmo trutta (river trout)
Description
Lysosomes are membrane-delimited organelles in animal cells serving as the cell's main digestive compartment to which all sorts of macromolecules are delivered for degradation. They contain more than 40 hydrolases in an acidic environment (pH of about 5). After synthesis in the ER, lysosomal enzymes are decorated with mannose-6-phosphate residues, which are recognized by mannose-6-phosphate receptors in the trans-Golgi network. They are packaged into clathrin-coated vesicles and are transported to late endosomes. Substances for digestion are acquired by the lysosomes via a series of processes including endocytosis, phagocytosis, and autophagy.
Class
Cellular Processes; Transport and catabolism
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Salmo trutta (river trout) [GN:
stru ]
Gene
115171120 V-type proton ATPase 116 kDa subunit a-like isoform X1 [KO:K02154 ]
115159435 V-type proton ATPase 116 kDa subunit a-like isoform X1 [KO:K02154 ]
115161297 atp6v0a1; V-type proton ATPase 116 kDa subunit a isoform X1 [KO:K02154 ]
115173365 V-type proton ATPase 116 kDa subunit a-like isoform X1 [KO:K02154 ]
115204198 V-type proton ATPase 116 kDa subunit a-like isoform X1 [KO:K02154 ]
115198047 V-type proton ATPase 116 kDa subunit a-like isoform X1 [KO:K02154 ]
115170739 atp6v0c; V-type proton ATPase 16 kDa proteolipid subunit [KO:K02155 ]
115205067 lysosome-associated membrane glycoprotein 2-like isoform X1 [KO:K06528 ]
115170070 lysosome-associated membrane glycoprotein 2-like isoform X1 [KO:K06528 ]
115167899 natural resistance-associated macrophage protein 2-like isoform X1 [KO:K21398 ]
115150446 natural resistance-associated macrophage protein 2-like isoform X1 [KO:K21398 ]
115207976 natural resistance-associated macrophage protein 2-like isoform X1 [KO:K21398 ]
115181443 lysosomal-associated transmembrane protein 4B-like isoform X1 [KO:K12387 ]
115164170 ATP-binding cassette sub-family A member 2-like isoform X1 [KO:K05642 ]
115200469 ATP-binding cassette sub-family A member 2-like isoform X1 [KO:K05642 ]
115164275 ATP-binding cassette sub-family B member 9-like isoform X1 [KO:K05656 ]
115157711 major facilitator superfamily domain-containing protein 8-like [KO:K12307 ]
115198063 mfsd8; major facilitator superfamily domain-containing protein 8 isoform X1 [KO:K12307 ]
115159578 gnptg; N-acetylglucosamine-1-phosphotransferase subunit gamma [KO:K10087 ]
115179583 N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase-like isoform X1 [KO:K01125 ] [EC:3.1.4.45 ]
115174818 cation-independent mannose-6-phosphate receptor-like isoform X1 [KO:K06564 ]
115177625 ADP-ribosylation factor-binding protein GGA3-like isoform X1 [KO:K12404 ]
115147193 ADP-ribosylation factor-binding protein GGA3-like isoform X1 [KO:K12404 ]
115184982 lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog isoform X1 [KO:K19363 ]
115183503 lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog [KO:K19363 ]
115177815 lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog isoform X1 [KO:K19363 ]
115178800 lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog isoform X1 [KO:K19363 ]
115147602 lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog isoform X1 [KO:K19363 ]
115147604 lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog [KO:K19363 ]
115198644 lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog [KO:K19363 ]
115206204 lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog [KO:K19363 ]
115183495 lipopolysaccharide-induced tumor necrosis factor-alpha factor-like [KO:K19363 ]
115189869 lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog [KO:K19363 ]
Compound
Reference
Authors
Eskelinen EL, Tanaka Y, Saftig P
Title
At the acidic edge: emerging functions for lysosomal membrane proteins.
Journal
Reference
Authors
Neufeld EF
Title
Lysosomal storage diseases.
Journal
Reference
Authors
von Figura K, Hasilik A
Title
Lysosomal enzymes and their receptors.
Journal
Reference
Authors
Janvier K, Bonifacino JS
Title
Role of the endocytic machinery in the sorting of lysosome-associated membrane proteins.
Journal
Reference
Authors
Vergarajauregui S, Puertollano R
Title
Mucolipidosis type IV: the importance of functional lysosomes for efficient autophagy.
Journal
Reference
Authors
Jaskolka MC, Winkley SR, Kane PM
Title
RAVE and Rabconnectin-3 Complexes as Signal Dependent Regulators of Organelle Acidification.
Journal
Reference
Authors
Majdoul S, Compton AA
Title
Lessons in self-defence: inhibition of virus entry by intrinsic immunity.
Journal
Related pathway
stru04130 SNARE interactions in vesicular transport
KO pathway
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