KEGG   PATHWAY: vpf05111
Entry
vpf05111                    Pathway                                
Name
Biofilm formation - Vibrio cholerae - Vibrio parahaemolyticus O1:Kuk FDA_R31
Description
Surface colonization and subsequent biofilm formation and development provide numerous advantages to microorganisms. On the other hand, biofilm formation is an energetically costly process and therefore must be tightly regulated and plastic, enabling biofilm bacteria to be responsive to the various environmental cues. The quorum sensing (QS) pathway of Vibrio cholerae activates the expression of VpsR, VpsT and AphA (the main activators of biofilm formation) at low cell density and HapR (the main repressor) at high cell density. At low cell density, biofilm genes, including Vibrio polysaccharide (VPS) biosynthesis genes and the major extracellular matrix genes RbmA, RbmC, and Bap1, are expressed. The QS pathway also leads to induction of virulence factors such as toxin coregulated pilus (TCP) and cholera toxin (CTX), essential for colonization of the host and enterotoxicity, respectively. The VarS/VarA signaling system responds to an unknown environmental cue and represses biofilm production by process which involves the regulatory sRNAs CsrB, CsrC and CsrD and the RNA-binding protein CsrA, interfering with LuxO of the QS pathway. The second messenger cAMP acts as a repressor of biofilm formation. cAMP is generated by adenylate cyclase CyaA, and in complex with cAMP receptor protein (CRP), this nucleotide has been shown to upregulate HapR production through the positive regulation of the CAI-I synthase CqsA and the negative regulation of Fis. The second messenger c-di-GMP is a key signalling molecule controlling motility and biofilm matrix production. High cellular levels of c-di-GMP promote enhanced transcription of genes involved in biofilm formation, possibly by promoting VpsT-mediated transcriptional activation of vps genes.
Class
Cellular Processes; Cellular community - prokaryotes
Pathway map
vpf05111  Biofilm formation - Vibrio cholerae
vpf05111

Organism
Vibrio parahaemolyticus O1:Kuk FDA_R31 [GN:vpf]
Gene
M634_15065  S-ribosylhomocysteinase [KO:K07173] [EC:4.4.1.21]
M634_20450  ATPase [KO:K10909] [EC:2.7.13.3 3.1.3.-]
M634_20445  ABC transporter substrate-binding protein [KO:K10910]
M634_21405  CAI-1 autoinducer synthase [KO:K10915] [EC:2.3.-.-]
M634_21400  chemotaxis protein CheY [KO:K10916] [EC:2.7.13.3 3.1.3.-]
M634_12685  phosphorelay protein luxU [KO:K10911]
M634_12690  ATPase AAA [KO:K10912]
M634_00535  RNA-binding protein Hfq [KO:K03666]
M634_00290  transcriptional regulator [KO:K10917]
M634_13320  LysR family transcriptional regulator [KO:K10918]
M634_16710  LuxR family transcriptional regulator [KO:K20918]
M634_04455  Fis family transcriptional regulator [KO:K20919]
M634_00685  cysE; serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
M634_16490  capsular polysaccharide biosynthesis protein [KO:K03606] [EC:2.7.8.31]
M634_16495  capsular polysaccharide biosynthesis protein [KO:K20920]
M634_16500  capsular polysaccharide biosynthesis protein [KO:K20988]
M634_16540  hypothetical protein [KO:K20950]
M634_02660  general secretion pathway protein C [KO:K02452]
M634_02665  general secretion pathway protein D [KO:K02453]
M634_02670  general secretion pathway protein E [KO:K02454] [EC:7.4.2.8]
M634_02675  general secretion pathway protein F [KO:K02455]
M634_02680  general secretion pathway protein G [KO:K02456]
M634_02685  general secretion pathway protein H [KO:K02457]
M634_02690  general secretion pathway protein I [KO:K02458]
M634_02695  general secretion pathway protein J [KO:K02459]
M634_02700  general secretion pathway protein K [KO:K02460]
M634_02705  general secretion pathway protein L [KO:K02461]
M634_02710  general secretion pathway protein M [KO:K02462]
M634_02715  general secretion pathway protein N [KO:K02463]
M634_06115  transcriptional regulator [KO:K10921]
M634_06110  membrane protein [KO:K10922]
M634_07040  porin [KO:K10940]
M634_14720  membrane protein [KO:K08720]
M634_21335  organic solvent ABC transporter substrate-binding protein [KO:K10936]
M634_24625  sugar ABC transporter substrate-binding protein [KO:K10939]
M634_14955  LuxR family transcriptional regulator [KO:K10913]
M634_21715  peptidase [KO:K08604] [EC:3.4.24.25]
M634_15260  sensory histidine kinase [KO:K07678] [EC:2.7.13.3]
M634_11955  sirA; response regulator [KO:K07689]
M634_15155  hypothetical protein [KO:K03563]
M634_05960  PTS glucose transporter subunit IIA [KO:K02777] [EC:2.7.1.-]
M634_12430  PTS glucose transporter subunit IIBC [KO:K02779] [EC:2.7.1.199]
M634_17800  PTS glucose transporter subunit IIBC [KO:K02779] [EC:2.7.1.199]
M634_01455  cyaA; adenylate cyclase [KO:K05851] [EC:4.6.1.1]
M634_00435  transcriptional regulator [KO:K10914]
M634_12035  transcriptional regulator [KO:K10914]
M634_00930  Fis family transcriptional regulator [KO:K03557]
M634_12580  diguanylate cyclase [KO:K20955] [EC:2.7.7.65]
M634_18495  diguanylate cyclase [KO:K20956] [EC:2.7.7.65]
M634_06795  diguanylate cyclase [KO:K20957] [EC:2.7.7.65]
M634_10125  diguanylate cyclase [KO:K20959] [EC:2.7.7.65]
M634_22325  diguanylate cyclase [KO:K20962] [EC:3.1.4.52]
M634_01380  histidine kinase [KO:K07181] [EC:3.1.4.52]
M634_01415  diguanylate cyclase [KO:K20964] [EC:3.1.4.52]
M634_14605  c-di-GMP phosphodiesterase A [KO:K20965] [EC:3.1.4.52]
M634_21100  diguanylate phosphodiesterase [KO:K20966] [EC:3.1.4.52]
M634_16040  MSHA biogenesis protein MshE [KO:K12276]
M634_16025  hypothetical protein [KO:K10924]
M634_21680  MSHA biogenesis protein MshA [KO:K10924]
M634_16015  MSHA biogenesis protein MshC [KO:K10926]
M634_16010  MSHA biogenesis protein MshD [KO:K10927]
M634_13665  Fis family transcriptional regulator [KO:K10941]
M634_15885  RNA polymerase factor sigma-54 [KO:K03092]
M634_13660  sensor histidine kinase [KO:K10942] [EC:2.7.13.3]
M634_13655  Fis family transcriptional regulator [KO:K10943]
M634_17140  ATPase AAA [KO:K10943]
M634_13560  RNA polymerase sigma 70 [KO:K02405]
M634_17225  RNA polymerase sigma factor [KO:K02405]
Compound
C00031  D-Glucose
C00044  GTP
C00092  D-Glucose 6-phosphate
C00575  3',5'-Cyclic AMP
C16421  AI-2
C16463  3',5'-Cyclic diGMP
C16640  CAI-1
C18076  5'-Phosphoguanylyl(3'->5')guanosine
Reference
  Authors
Teschler JK, Zamorano-Sanchez D, Utada AS, Warner CJ, Wong GC, Linington RG, Yildiz FH
  Title
Living in the matrix: assembly and control of Vibrio cholerae biofilms.
  Journal
Nat Rev Microbiol 13:255-68 (2015)
DOI:10.1038/nrmicro3433
Reference
  Authors
Dang H, Lovell CR
  Title
Microbial Surface Colonization and Biofilm Development in Marine Environments.
  Journal
Microbiol Mol Biol Rev 80:91-138 (2016)
DOI:10.1128/MMBR.00037-15
Reference
  Authors
Hengge R
  Title
Principles of c-di-GMP signalling in bacteria.
  Journal
Nat Rev Microbiol 7:263-73 (2009)
DOI:10.1038/nrmicro2109
Reference
  Authors
Liang ZX
  Title
The expanding roles of c-di-GMP in the biosynthesis of exopolysaccharides and secondary metabolites.
  Journal
Nat Prod Rep 32:663-83 (2015)
DOI:10.1039/c4np00086b
Reference
PMID:9371445
  Authors
Sandkvist M, Michel LO, Hough LP, Morales VM, Bagdasarian M, Koomey M, DiRita VJ, Bagdasarian M
  Title
General secretion pathway (eps) genes required for toxin secretion and outer membrane biogenesis in Vibrio cholerae.
  Journal
J Bacteriol 179:6994-7003 (1997)
DOI:10.1128/JB.179.22.6994-7003.1997
Reference
  Authors
Lenz DH, Miller MB, Zhu J, Kulkarni RV, Bassler BL
  Title
CsrA and three redundant small RNAs regulate quorum sensing in Vibrio cholerae.
  Journal
Mol Microbiol 58:1186-202 (2005)
DOI:10.1111/j.1365-2958.2005.04902.x
Reference
  Authors
Houot L, Watnick PI
  Title
A novel role for enzyme I of the Vibrio cholerae phosphoenolpyruvate phosphotransferase system in regulation of growth in a biofilm.
  Journal
J Bacteriol 190:311-20 (2008)
DOI:10.1128/JB.01410-07
Reference
  Authors
Liang W, Silva AJ, Benitez JA
  Title
The cyclic AMP receptor protein modulates colonial morphology in Vibrio cholerae.
  Journal
Appl Environ Microbiol 73:7482-7 (2007)
DOI:10.1128/AEM.01564-07
Reference
  Authors
Lenz DH, Bassler BL
  Title
The small nucleoid protein Fis is involved in Vibrio cholerae quorum sensing.
  Journal
Mol Microbiol 63:859-71 (2007)
DOI:10.1111/j.1365-2958.2006.05545.x
Related
pathway
vpf02024  Quorum sensing
vpf02040  Flagellar assembly
vpf03070  Bacterial secretion system
KO pathway
ko05111   
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