KEGG   PATHWAY: pcoq04120
Entry
pcoq04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Propithecus coquereli (Coquerel's sifaka)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
pcoq04120  Ubiquitin mediated proteolysis
pcoq04120

Other DBs
GO: 0016567
Organism
Propithecus coquereli (Coquerel's sifaka) [GN:pcoq]
Gene
105825561  UBC; polyubiquitin-C [KO:K02927]
105818097  ubiquitin-60S ribosomal protein L40-like [KO:K02927]
105818146  ubiquitin-60S ribosomal protein L40 [KO:K02927]
105814769  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
105816800  UBA1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
105817540  SAE1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
105816200  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
105819504  UBA3; NEDD8-activating enzyme E1 catalytic subunit [KO:K10686] [EC:6.2.1.64]
105805667  UBA7; ubiquitin-like modifier-activating enzyme 7 isoform X1 [KO:K10698] [EC:6.2.1.45]
105817754  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
105816026  UBE2B; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
105827492  ubiquitin-conjugating enzyme E2 C-like isoform X1 [KO:K06688] [EC:2.3.2.23]
105807144  UBE2C; ubiquitin-conjugating enzyme E2 C isoform X1 [KO:K06688] [EC:2.3.2.23]
105819186  UBE2D3; ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
105821061  UBE2D1; ubiquitin-conjugating enzyme E2 D1 [KO:K06689] [EC:2.3.2.23]
105811998  UBE2D2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
105812484  UBE2D4; ubiquitin-conjugating enzyme E2 D4 isoform X1 [KO:K06689] [EC:2.3.2.23]
105810547  UBE2E1; ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
105810557  UBE2E2; ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
105815938  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
105813999  UBE2F; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
105816974  UBE2G1; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
105817091  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
105826762  UBE2H; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
105813134  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
105805355  UBE2J1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
105820930  UBE2J2; ubiquitin-conjugating enzyme E2 J2 isoform X1 [KO:K04554] [EC:2.3.2.23]
105810510  UBE2K; ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
105810190  UBE2L3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
105809975  ubiquitin/ISG15-conjugating enzyme E2 L6-like [KO:K04553] [EC:2.3.2.23]
105819605  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
105808821  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
105809196  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
105824782  UBE2O; E2/E3 hybrid ubiquitin-protein ligase UBE2O isoform X1 [KO:K10581] [EC:2.3.2.24]
105821985  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 isoform X1 [KO:K10582] [EC:2.3.2.23]
105816435  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
105816470  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
105820191  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
105811210  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
105809391  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
105806326  UBE2U; ubiquitin-conjugating enzyme E2 U [KO:K10584] [EC:2.3.2.23]
105825351  UBE2W; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
105817787  LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 W-like [KO:K10688] [EC:2.3.2.23 2.3.2.25]
105824747  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
105816882  BIRC6; baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
105813424  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
105815070  UBE3B; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
105826204  ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
105822532  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
105806029  SMURF1; E3 ubiquitin-protein ligase SMURF1 [KO:K04678] [EC:2.3.2.26]
105804916  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
105809711  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 [KO:K05633] [EC:2.3.2.26]
105823338  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
105808748  TRIP12; E3 ubiquitin-protein ligase TRIP12 [KO:K10590] [EC:2.3.2.26]
105821393  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
105816382  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
105823436  HUWE1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
105809777  UBR5; E3 ubiquitin-protein ligase UBR5 [KO:K10593] [EC:2.3.2.26]
105810991  HERC1; probable E3 ubiquitin-protein ligase HERC1 [KO:K10594] [EC:2.3.2.26]
105813330  E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
105812694  HERC3; probable E3 ubiquitin-protein ligase HERC3 [KO:K10614] [EC:2.3.2.26]
105821790  HERC4; probable E3 ubiquitin-protein ligase HERC4 [KO:K10615] [EC:2.3.2.26]
105819198  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
105824891  UBE4B; ubiquitin conjugation factor E4 B [KO:K10597] [EC:2.3.2.27]
105822599  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
105810195  PPIL2; peptidyl-prolyl cis-trans isomerase-like 2 [KO:K10598] [EC:5.2.1.8]
105809936  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
105806213  UBOX5; RING finger protein 37 isoform X1 [KO:K10600]
105812777  E3 ubiquitin-protein ligase Mdm2 [KO:K06643] [EC:2.3.2.27]
105819255  CBL; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
105817495  CBLC; E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
105812371  PARK2; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
105818878  SIAH1; E3 ubiquitin-protein ligase SIAH1 [KO:K04506] [EC:2.3.2.27]
105807294  PML; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
105814571  TRAF6; LOW QUALITY PROTEIN: TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
105819135  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
105810612  RFWD2; E3 ubiquitin-protein ligase RFWD2 [KO:K10143] [EC:2.3.2.27]
105822818  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
105822276  BIRC2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
105822279  BIRC3; baculoviral IAP repeat-containing protein 3 [KO:K16060]
105826835  XIAP; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
105818565  BIRC7; baculoviral IAP repeat-containing protein 7 isoform X1 [KO:K16061]
105826802  PIAS1; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
105808905  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
105809620  PIAS3; E3 SUMO-protein ligase PIAS3 [KO:K16064] [EC:2.3.2.-]
105811863  PIAS4; LOW QUALITY PROTEIN: E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
105827336  SYVN1; E3 ubiquitin-protein ligase synoviolin isoform X1 [KO:K10601] [EC:2.3.2.27]
105809457  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
105824151  AIRE; autoimmune regulator [KO:K10603]
105813128  MGRN1; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase MGRN1 [KO:K10604] [EC:2.3.2.27]
105806148  E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
105820357  MID1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
105826437  E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
105826438  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
105813677  TRIM37; E3 ubiquitin-protein ligase TRIM37 [KO:K10608] [EC:2.3.2.27]
105805282  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
105824617  CUL1; cullin-1 [KO:K03347]
105826482  LOW QUALITY PROTEIN: S-phase kinase-associated protein 1-like [KO:K03094]
105816013  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
105824339  BTRC; F-box/WD repeat-containing protein 1A [KO:K03362]
105814664  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
105814809  SKP2; S-phase kinase-associated protein 2 [KO:K03875]
105811129  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
105824965  FBXO2; F-box only protein 2 [KO:K10099]
105814590  FBXO4; F-box only protein 4 [KO:K10291]
105808528  CUL2; cullin-2 [KO:K03870]
105825417  TCEB1; transcription elongation factor B polypeptide 1 [KO:K03872]
105812349  transcription elongation factor B polypeptide 2 [KO:K03873]
105813078  TCEB2; transcription elongation factor B polypeptide 2 [KO:K03873]
105812545  VHL; von Hippel-Lindau disease tumor suppressor isoform X1 [KO:K03871]
105808739  CUL3; cullin-3 [KO:K03869]
105807821  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
105827023  KLHL9; kelch-like protein 9 [KO:K10447]
105817745  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
105825294  RHOBTB2; rho-related BTB domain-containing protein 2 [KO:K07868]
105821085  RHOBTB1; rho-related BTB domain-containing protein 1 [KO:K07868]
105825133  CUL4A; cullin-4A [KO:K10609]
105825165  CUL4B; cullin-4B [KO:K10609]
105825046  DDB1; DNA damage-binding protein 1 [KO:K10610]
105811078  DDB2; DNA damage-binding protein 2 [KO:K10140]
105826545  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
105809836  DET1; DET1 homolog isoform X1 [KO:K10571]
105812867  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
105822179  CUL5; cullin-5 [KO:K10612]
105813004  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
105824014  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
105807460  CUL7; cullin-7 [KO:K10613]
105825193  FBXW8; F-box/WD repeat-containing protein 8 [KO:K10264]
105820024  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
105818715  ANAPC2; anaphase-promoting complex subunit 2 isoform X1 [KO:K03349]
105814100  CDC20; cell division cycle protein 20 homolog [KO:K03363]
105811970  FZR1; fizzy-related protein homolog [KO:K03364]
105820300  ANAPC1; anaphase-promoting complex subunit 1 [KO:K03348]
105819065  CDC27; cell division cycle protein 27 homolog [KO:K03350]
105826242  ANAPC4; anaphase-promoting complex subunit 4 [KO:K03351]
105825618  ANAPC5; anaphase-promoting complex subunit 5 isoform X1 [KO:K03352]
105824403  CDC16; cell division cycle protein 16 homolog [KO:K03353]
105823228  LOW QUALITY PROTEIN: cell division cycle protein 16 homolog [KO:K03353]
105825612  ANAPC7; anaphase-promoting complex subunit 7 [KO:K03354]
105811993  CDC23; cell division cycle protein 23 homolog [KO:K03355]
105808981  ANAPC10; anaphase-promoting complex subunit 10 [KO:K03357]
105807742  CDC26; anaphase-promoting complex subunit CDC26 isoform X1 [KO:K03359]
105826452  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
105811495  ANAPC15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
105825483  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
pcoq03050  Proteasome
KO pathway
ko04120   
LinkDB

DBGET integrated database retrieval system