KEGG   PATHWAY: pvt04120
Entry
pvt04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Pogona vitticeps (central bearded dragon)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
pvt04120  Ubiquitin mediated proteolysis
pvt04120

Other DBs
GO: 0016567
Organism
Pogona vitticeps (central bearded dragon) [GN:pvt]
Gene
110087399  UBC; polyubiquitin-C [KO:K08770]
110072526  ubiquitin-60S ribosomal protein L40-like [KO:K02927]
110072527  ubiquitin-60S ribosomal protein L40 [KO:K02927]
110087081  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
110081138  UBA1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
110077021  UBA7; ubiquitin-like modifier-activating enzyme 7 isoform X1 [KO:K03178] [EC:6.2.1.45]
110075721  SAE1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
110081280  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
110083321  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
110088964  UBA6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
110090261  UBE2A; ubiquitin-conjugating enzyme E2 A isoform X1 [KO:K10573] [EC:2.3.2.23]
110079397  UBE2B; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
110086235  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
110077451  UBE2D2; ubiquitin-conjugating enzyme E2 D2 isoform X1 [KO:K06689] [EC:2.3.2.23]
110073704  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
110085334  UBE2D3; ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
110086518  ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
110086535  UBE2E1; ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
110086960  UBE2E3; ubiquitin-conjugating enzyme E2 E3 isoform X1 [KO:K20217] [EC:2.3.2.23]
110081891  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
110089243  UBE2G1; ubiquitin-conjugating enzyme E2 G1 isoform X1 [KO:K10575] [EC:2.3.2.23]
110075826  UBE2G2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
110091330  UBE2H; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
110085005  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
110076203  UBE2J1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
110073283  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
110075214  UBE2K; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
110088658  UBE2L3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
110071729  ubiquitin-conjugating enzyme E2 L3-like [KO:K04552] [EC:2.3.2.23]
110091319  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
110091708  UBE2N; ubiquitin-conjugating enzyme E2 N isoform X1 [KO:K10580] [EC:2.3.2.23]
110085899  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme [KO:K10581] [EC:2.3.2.24]
110086844  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 [KO:K10582] [EC:2.3.2.23]
110081000  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
110080027  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
110079286  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
110080481  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
110081872  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
110090199  UBE2U; ubiquitin-conjugating enzyme E2 U isoform X1 [KO:K10584] [EC:2.3.2.23]
110089643  UBE2W; ubiquitin-conjugating enzyme E2 W isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
110090867  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
110083924  BIRC6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
110087728  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
110083432  UBE3B; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
110071901  UBE3C; ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
110073327  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
110087204  SMURF1; E3 ubiquitin-protein ligase SMURF1 [KO:K04678] [EC:2.3.2.26]
110085919  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
110085122  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
110076252  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
110078444  TRIP12; E3 ubiquitin-protein ligase TRIP12 [KO:K10590] [EC:2.3.2.26]
110074532  NEDD4; E3 ubiquitin-protein ligase NEDD4 [KO:K10591] [EC:2.3.2.26]
110085068  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
110078623  HUWE1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
110073809  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
110074517  HERC1; LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC1 [KO:K10594] [EC:2.3.2.26]
110080685  HERC2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
110080519  HERC3; probable E3 ubiquitin-protein ligase HERC3 [KO:K10614] [EC:2.3.2.26]
110087594  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
110079187  UBE4A; ubiquitin conjugation factor E4 A isoform X1 [KO:K10596] [EC:2.3.2.27]
110073246  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
110089421  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
110088659  PPIL2; peptidyl-prolyl cis-trans isomerase-like 2 [KO:K10598] [EC:5.2.1.8]
110078367  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
110091672  UBOX5; RING finger protein 37 [KO:K10600]
110075109  MDM2; E3 ubiquitin-protein ligase Mdm2 [KO:K06643] [EC:2.3.2.27]
110078535  CBL; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
110087890  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
110089435  CBLC; E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
110087285  PRKN; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
110076296  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
110084440  PML; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
110090250  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
110085400  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
110090311  RFWD2; E3 ubiquitin-protein ligase RFWD2 [KO:K10143] [EC:2.3.2.27]
110080243  BIRC2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
110088616  XIAP; E3 ubiquitin-protein ligase XIAP isoform X1 [KO:K04725] [EC:2.3.2.27]
110090030  BIRC7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
110086897  PIAS1; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
110085936  PIAS2; E3 SUMO-protein ligase PIAS2 [KO:K16063] [EC:2.3.2.-]
110088121  PIAS3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
110072483  PIAS4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
110083748  SYVN1; E3 ubiquitin-protein ligase synoviolin isoform X1 [KO:K10601] [EC:2.3.2.27]
110081675  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
110075811  AIRE; autoimmune regulator [KO:K10603]
110089109  MGRN1; E3 ubiquitin-protein ligase MGRN1 [KO:K10604] [EC:2.3.2.27]
110080303  BRCA1; breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
110091482  FANCL; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
110075474  MID1; E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
110089226  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
110075508  TRIM37; E3 ubiquitin-protein ligase TRIM37 [KO:K10608] [EC:2.3.2.27]
110076073  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
110088676  CUL1; cullin-1 isoform X1 [KO:K03347]
110079401  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
110077581  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
110078955  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
110080059  SKP2; S-phase kinase-associated protein 2 [KO:K03875]
110078117  F-box/WD repeat-containing protein 7-like [KO:K10260]
110072760  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
110073218  F-box only protein 2-like [KO:K10099]
110073889  FBXO4; F-box only protein 4 [KO:K10291]
110082690  CUL2; cullin-2 isoform X1 [KO:K03870]
110089664  ELOC; elongin-C [KO:K03872]
110088367  ELOB; elongin-B isoform X1 [KO:K03873]
110077876  VHL; von Hippel-Lindau disease tumor suppressor [KO:K03871]
110079968  CUL3; cullin-3 isoform X1 [KO:K03869]
110081732  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
110080179  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
110078850  kelch-like protein 9 [KO:K10447]
110079818  rho-related BTB domain-containing protein 2-like [KO:K07868]
110072185  RHOBTB2; rho-related BTB domain-containing protein 2 isoform X1 [KO:K07868]
110090862  RHOBTB1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
110089988  CUL4B; cullin-4B [KO:K10609]
110074107  CUL4A; cullin-4A [KO:K10609]
110078318  DDB1; DNA damage-binding protein 1 isoform X1 [KO:K10610]
110081991  DDB2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
110073973  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
110072965  DET1; DET1 homolog isoform X1 [KO:K10571]
110078457  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
110084078  CUL5; cullin-5 isoform X1 [KO:K10612]
110087059  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
110078594  suppressor of cytokine signaling 3-like [KO:K04696]
110090429  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
110090102  FBXW8; F-box/WD repeat-containing protein 8 isoform X1 [KO:K10264]
110090598  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
110087456  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
110073711  CDC20; cell division cycle protein 20 homolog isoform X1 [KO:K03363]
110079275  FZR1; fizzy-related protein homolog [KO:K03364]
110087010  ANAPC1; anaphase-promoting complex subunit 1 [KO:K03348]
110082049  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
110072252  ANAPC4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
110083821  ANAPC5; anaphase-promoting complex subunit 5 [KO:K03352]
110074143  CDC16; cell division cycle protein 16 homolog [KO:K03353]
110083857  ANAPC7; anaphase-promoting complex subunit 7 isoform X1 [KO:K03354]
110077214  CDC23; cell division cycle protein 23 homolog [KO:K03355]
110073634  ANAPC10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
110082954  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
110075282  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
110078165  ANAPC15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
110073693  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
pvt03050  Proteasome
KO pathway
ko04120   
LinkDB

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