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KO |
 09100 Metabolism
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09120 Genetic Information Processing
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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 09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:lpj03000]
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03021 Transcription machinery [BR:lpj03021]
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03019 Messenger RNA biogenesis [BR:lpj03019]
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 03041 Spliceosome
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03011 Ribosome [BR:lpj03011]
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03009 Ribosome biogenesis [BR:lpj03009]
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03016 Transfer RNA biogenesis [BR:lpj03016]
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03012 Translation factors [BR:lpj03012]
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03110 Chaperones and folding catalysts [BR:lpj03110]
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04131 Membrane trafficking [BR:lpj04131]
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04121 Ubiquitin system [BR:lpj04121]
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03051 Proteasome [BR:lpj03051]
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03032 DNA replication proteins [BR:lpj03032]
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JDM1_2082 rnh; ribonuclease H (putative)
JDM1_1492 esbB; cell wall enzyme
JDM1_0328 conserved hypothetical protein
JDM1_1579 hbsU; DNA-binding protein II
JDM1_0001 dnaA; chromosomal replication initiation protein DnaA
JDM1_0013 dnaC; replicative DNA helicase DnaC
JDM1_0979 DNA replication protein
JDM1_1654 dnaG; DNA primase DnaG
JDM1_1266 dnaB; replication initiation and membrane attachment protein DnaB
JDM1_1267 dnaI; primosomal protein DnaI
JDM1_0008 ssb; single-strand binding protein
JDM1_0975 single-strand binding protein
JDM1_1597 dnaE; DNA-directed DNA polymerase III, alpha chain
JDM1_1709 polC; DNA polymerase III PolC
JDM1_0002 dnaN; DNA-directed DNA polymerase III, beta chain
JDM1_1783 holA; DNA polymerase III subunit delta
JDM1_0581 holB; DNA polymerase III subunit delta'
JDM1_0674 DNA-directed DNA polymerase III, epsilon chain (putative)
JDM1_0570 dnaX; DNA-directed DNA polymerase III, gamma/tau subunit
JDM1_1557 rnhB; ribonuclease HII
JDM1_1262 polA; DNA-directed DNA polymerase I
JDM1_0940 ligA; DNA ligase (NAD+)
JDM1_0006 gyrA; DNA gyrase, A subunit
JDM1_0005 gyrB; DNA gyrase, B subunit
JDM1_1547 parC; DNA topoisomerase IV subunit A
JDM1_1548 parE; DNA topoisomerase IV subunit B
JDM1_1555 topA; DNA topoisomerase I
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K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
K03469 rnhA; ribonuclease HI [EC:3.1.26.4]
K03530 hupB; DNA-binding protein HU-beta
K02313 dnaA; chromosomal replication initiator protein
K02314 dnaB; replicative DNA helicase [EC:5.6.2.3]
K02315 dnaC; DNA replication protein DnaC
K02316 dnaG; DNA primase [EC:2.7.7.101]
K03346 dnaB; replication initiation and membrane attachment protein
K11144 dnaI; primosomal protein DnaI
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03470 rnhB; ribonuclease HII [EC:3.1.26.4]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K02621 parC; topoisomerase IV subunit A [EC:5.6.2.2]
K02622 parE; topoisomerase IV subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
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03036 Chromosome and associated proteins [BR:lpj03036]
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03400 DNA repair and recombination proteins [BR:lpj03400]
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JDM1_0670 ung; uracil-DNA glycosylase
JDM1_1680 N-methylpurine-DNA glycosylase (putative)
JDM1_2685 mutY; A/G-specific adenine glycosylase (putative)
JDM1_2296 nth1; DNA-(apurinic or apyrimidinic site) lyase
JDM1_0273 DNA helicase (putative)
JDM1_2026 conserved hypothetical protein
JDM1_0720 conserved hypothetical protein
JDM1_0543 dut; trimetaphosphatase
JDM1_2285 ogt; methylated-DNA-(protein)-cysteine S-methyltransferase
JDM1_2420 tag2; DNA-3-methyladenine glycosylase I
JDM1_0262 tag1; DNA-3-methyladenine glycosylase I
JDM1_2645 tag3; DNA-3-methyladenine glycosylase I
JDM1_1263 fpg; formamidopyrimidine-DNA glycosylase
JDM1_0675 exoA; exodeoxyribonuclease III
JDM1_1666 nfo; endonuclease IV
JDM1_1746 recJ; single-strand DNA-specific exonuclease RecJ
JDM1_0940 ligA; DNA ligase (NAD+)
JDM1_1262 polA; DNA-directed DNA polymerase I
JDM1_2337 uvrA3; excinuclease ABC, subunit A
JDM1_0640 uvrA1; excinuclease ABC, subunit A
JDM1_0639 uvrB; excinuclease ABC subunit B
JDM1_1767 uvrC; excinuclease ABC subunit C
JDM1_0758 DNA helicase (putative)
JDM1_0939 pcrA; ATP-dependent DNA helicase PcrA
JDM1_0842 rpoB; DNA-directed RNA polymerase subunit beta
JDM1_0843 rpoC; DNA-directed RNA polymerase subunit beta'
JDM1_0876 rpoA; DNA-directed RNA polymerase subunit alpha
JDM1_0404 rpoE; DNA-directed RNA polymerase subunit delta
JDM1_1353 rpoZ; DNA-directed RNA polymerase, omega subunit
JDM1_0438 mfd; transcription-repair coupling factor
JDM1_1922 hexA; DNA mismatch repair protein
JDM1_1904 mutS; DNA mismatch repair protein MutS2
JDM1_1921 mutL; DNA mismatch repair protein
JDM1_1341 xseA; exodeoxyribonuclease VII large subunit
JDM1_1342 xseB; exodeoxyribonuclease VII, small subunit
JDM1_1597 dnaE; DNA-directed DNA polymerase III, alpha chain
JDM1_1709 polC; DNA polymerase III PolC
JDM1_0002 dnaN; DNA-directed DNA polymerase III, beta chain
JDM1_1783 holA; DNA polymerase III subunit delta
JDM1_0581 holB; DNA polymerase III subunit delta'
JDM1_0674 DNA-directed DNA polymerase III, epsilon chain (putative)
JDM1_0570 dnaX; DNA-directed DNA polymerase III, gamma/tau subunit
JDM1_0008 ssb; single-strand binding protein
JDM1_0975 single-strand binding protein
JDM1_1815 recD; exodeoxyribonuclease V, alpha chain
JDM1_1925 recA; recombinase A
JDM1_1917 ruvA; holliday junction DNA helicase RuvA
JDM1_1916 ruvB; Holliday junction DNA helicase B
JDM1_1355 priA; primosomal protein N'
JDM1_1297 sbcC; exonuclease SbcC
JDM1_1298 sbcD; exonuclease SbcD
JDM1_1184 phosphoesterase
JDM1_0544 radA; DNA repair protein RadA
JDM1_0004 recF; recombination protein F
JDM1_1367 recG; ATP-dependent DNA helicase RecG
JDM1_1657 recO; DNA repair protein RecO
JDM1_0572 recR; recombination protein RecR
JDM1_1346 recN; DNA repair protein RecN
JDM1_1474 recU; Holliday junction-specific endonuclease
JDM1_2159 rexA; ATP-dependent nuclease, subunit A
JDM1_2160 rexB; ATP-dependent nuclease, subunit B
JDM1_0006 gyrA; DNA gyrase, A subunit
JDM1_0005 gyrB; DNA gyrase, B subunit
JDM1_1555 topA; DNA topoisomerase I
JDM1_1579 hbsU; DNA-binding protein II
JDM1_0798 recQ1; ATP-dependent DNA helicase RecQ
JDM1_1585 recQ2; ATP-dependent DNA helicase RecQ
JDM1_1912 dinP; DNA-damage-inducible protein P
JDM1_2423 umuC; UV-damage repair protein
JDM1_1725 lexA; LexA repressor
JDM1_1048 recX; recombination regulator RecX
JDM1_1459 dinG; ATP-dependent helicase DinG
JDM1_0566 nrdE; ribonucleotide-diphosphate reductase subunit alpha
JDM1_0565 nrdF; ribonucleotide-diphosphate reductase subunit beta
JDM1_1158 exopolyphosphatase-related protein (putative)
JDM1_1911 exopolyphosphatase-related protein (putative)
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K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K10844 ERCC2; DNA excision repair protein ERCC-2 [EC:5.6.2.3]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K13531 adaB; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03048 rpoE; DNA-directed RNA polymerase subunit delta
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K07456 mutS2; DNA mismatch repair protein MutS2
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K03763 polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K03700 recU; recombination protein U
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K03502 umuC; DNA polymerase V
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
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03029 Mitochondrial biogenesis [BR:lpj03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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KEGG Orthology (KO) - Lactiplantibacillus plantarum JDM1