09100 Metabolism
09120 Genetic Information Processing
09121 Transcription
09122 Translation
09123 Folding, sorting and degradation
03060 Protein export [PATH:roa03060]
04141 Protein processing in endoplasmic reticulum
04130 SNARE interactions in vesicular transport
04120 Ubiquitin mediated proteolysis
04122 Sulfur relay system [PATH:roa04122]
03050 Proteasome [PATH:roa03050]
03018 RNA degradation [PATH:roa03018]
Pd630_LPD05424 Ribonuclease E Pd630_LPD02394 Enolase Pd630_LPD13121 Enolase Pd630_LPD03321 Polyribonucleotide nucleotidyltransferase Pd630_LPD11006 Ribonuclease R Pd630_LPD09019 Ribonuclease R Pd630_LPD02677 Cold-shock DEAD box protein A Pd630_LPD05408 putative ATP-dependent DNA helicase recQ Pd630_LPD05614 Transcription termination factor Rho Pd630_LPD03367 Putative ribonuclease J Pd630_LPD02079 Chaperone protein DnaK Pd630_LPD03845 Chaperone protein DnaK Pd630_LPD02840 60 kDa chaperonin 2 Pd630_LPD04557 60 kDa chaperonin 3 Pd630_LPD06328 60 kDa chaperonin 1 Pd630_LPD03171 Polyphosphate kinase Pd630_LPD00099 regulatory protein Pd630_LPD05800 polyphosphate kinase Pd630_LPD08032 CCA-adding enzyme
K08300 rne; ribonuclease E [EC:3.1.26.12] K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] K12573 rnr; ribonuclease R [EC:3.1.13.1] K12573 rnr; ribonuclease R [EC:3.1.13.1] K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] K03628 rho; transcription termination factor Rho K12574 rnj; ribonuclease J [EC:3.1.-.-] K04043 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK K04077 groEL; chaperonin GroEL [EC:5.6.1.7] K04077 groEL; chaperonin GroEL [EC:5.6.1.7] K04077 groEL; chaperonin GroEL [EC:5.6.1.7] K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
09124 Replication and repair
09126 Chromosome
09125 Information processing in viruses
09130 Environmental Information Processing
09140 Cellular Processes
09150 Organismal Systems
09160 Human Diseases
09180 Brite Hierarchies
09181 Protein families: metabolism
09182 Protein families: genetic information processing
03000 Transcription factors [BR:roa03000]
03021 Transcription machinery [BR:roa03021]
03019 Messenger RNA biogenesis [BR:roa03019]
Pd630_LPD01077 VCP-like ATPase Pd630_LPD05424 Ribonuclease E Pd630_LPD03193 Ribonuclease 3 Pd630_LPD03367 Putative ribonuclease J Pd630_LPD11006 Ribonuclease R Pd630_LPD09019 Ribonuclease R Pd630_LPD05538 Oligoribonuclease Pd630_LPD02677 Cold-shock DEAD box protein A Pd630_LPD05408 putative ATP-dependent DNA helicase recQ Pd630_LPD02394 Enolase Pd630_LPD13121 Enolase Pd630_LPD03321 Polyribonucleotide nucleotidyltransferase Pd630_LPD05614 Transcription termination factor Rho Pd630_LPD02079 Chaperone protein DnaK Pd630_LPD03845 Chaperone protein DnaK Pd630_LPD02840 60 kDa chaperonin 2 Pd630_LPD04557 60 kDa chaperonin 3 Pd630_LPD06328 60 kDa chaperonin 1 Pd630_LPD03171 Polyphosphate kinase Pd630_LPD00099 regulatory protein Pd630_LPD05800 polyphosphate kinase Pd630_LPD08032 CCA-adding enzyme Pd630_LPD00075 Putative regulator of ribonuclease activity Pd630_LPD03921 UPF0042 nucleotide-binding protein Pd630_LPD04918 putative helicase helY
K13525 VCP; transitional endoplasmic reticulum ATPase K08300 rne; ribonuclease E [EC:3.1.26.12] K03685 rnc; ribonuclease III [EC:3.1.26.3] K12574 rnj; ribonuclease J [EC:3.1.-.-] K12573 rnr; ribonuclease R [EC:3.1.13.1] K12573 rnr; ribonuclease R [EC:3.1.13.1] K13288 orn; oligoribonuclease [EC:3.1.-.-] K05592 deaD; ATP-dependent RNA helicase DeaD [EC:5.6.2.7] K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] K01689 ENO1_2_3; enolase 1/2/3 [EC:4.2.1.11] K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] K03628 rho; transcription termination factor Rho K04043 dnaK; molecular chaperone DnaK K04043 dnaK; molecular chaperone DnaK K04077 groEL; chaperonin GroEL [EC:5.6.1.7] K04077 groEL; chaperonin GroEL [EC:5.6.1.7] K04077 groEL; chaperonin GroEL [EC:5.6.1.7] K00937 ppk1; polyphosphate kinase [EC:2.7.4.1] K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] K22468 ppk2; polyphosphate kinase [EC:2.7.4.34] K00970 pcnB; poly(A) polymerase [EC:2.7.7.19] K02553 rraA; regulator of ribonuclease activity A K06958 rapZ; RNase adapter protein RapZ K03727 helY; ATP-dependent RNA helicase HelY [EC:3.6.4.-]
03041 Spliceosome
03011 Ribosome [BR:roa03011]
03009 Ribosome biogenesis [BR:roa03009]
03016 Transfer RNA biogenesis [BR:roa03016]
03012 Translation factors [BR:roa03012]
03110 Chaperones and folding catalysts [BR:roa03110]
04131 Membrane trafficking [BR:roa04131]
04121 Ubiquitin system [BR:roa04121]
03051 Proteasome [BR:roa03051]
03032 DNA replication proteins [BR:roa03032]
03036 Chromosome and associated proteins [BR:roa03036]
03400 DNA repair and recombination proteins [BR:roa03400]
Pd630_LPD06524 Methylated-DNA--protein-cysteine methyltransferase, constitutive Pd630_LPD06526 Methylated-DNA--protein-cysteine methyltransferase Pd630_LPD02150 Methylated-DNA--protein-cysteine methyltransferase Pd630_LPD01519 Deoxyribodipyrimidine photo-lyase Pd630_LPD03182 Uracil-DNA glycosylase Pd630_LPD05029 Putative 3-methyladenine DNA glycosylase Pd630_LPD00892 A/G-specific adenine DNA glycosylase Pd630_LPD00769 Endonuclease III Pd630_LPD01465 putative DNA repair helicase RAD25 Pd630_LPD02562 Putative mutator mutT2 protein Pd630_LPD06374 Putative mutator mutT3 protein Pd630_LPD07669 putative mutator mutT1 protein Pd630_LPD06346 hypothetical protein Pd630_LPD05132 hypothetical protein Pd630_LPD03452 Deoxyuridine 5'-triphosphate nucleotidohydrolase Pd630_LPD06522 Alpha-ketoglutarate-dependent dioxygenase AlkB Pd630_LPD02524 G/U mismatch-specific DNA glycosylase Pd630_LPD00380 DNA polymerase Pd630_LPD02574 Uncharacterized protein Pd630_LPD06521 putative bifunctional transcriptional activator/DNA repair enzyme AlkA Pd630_LPD02608 putative GMP synthase [glutamine-hydrolyzing] Pd630_LPD03194 Formamidopyrimidine-DNA glycosylase Pd630_LPD06428 Formamidopyrimidine-DNA glycosylase Pd630_LPD02926 Putative DNA glycosylase Pd630_LPD05495 Putative DNA glycosylase Pd630_LPD04331 DNA-(apurinic or apyrimidinic site) lyase Pd630_LPD02891 DNA-(apurinic or apyrimidinic site) lyase Pd630_LPD06361 Exodeoxyribonuclease III Pd630_LPD06062 putative endonuclease 4 Pd630_LPD03134 DNA ligase Pd630_LPD05078 DNA polymerase I Pd630_LPD04415 excinuclease ABC, A subunit Pd630_LPD05054 UvrABC system protein A Pd630_LPD05062 UvrABC system protein B Pd630_LPD03920 UvrABC system protein C Pd630_LPD03043 ATP-dependent DNA helicase pcrA Pd630_LPD03048 putative DNA helicase II Pd630_LPD02168 ATP-dependent DNA helicase pcrA Pd630_LPD06132 DNA-directed RNA polymerase subunit beta Pd630_LPD06131 DNA-directed RNA polymerase subunit beta' Pd630_LPD02804 DNA-directed RNA polymerase subunit alpha Pd630_LPD03900 DNA-directed RNA polymerase subunit omega Pd630_LPD02376 Transcription-repair-coupling factor Pd630_LPD02495 Exodeoxyribonuclease 7 large subunit Pd630_LPD02494 Exodeoxyribonuclease 7 small subunit Pd630_LPD05163 DNA polymerase III subunit alpha Pd630_LPD00002 DNA polymerase III subunit beta Pd630_LPD05387 hypothetical protein Pd630_LPD00801 DNA polymerase III subunit gamma/tau Pd630_LPD05998 Tellurium resistance protein TerD Pd630_LPD05222 Uncharacterized protein Pd630_LPD01623 DNA polymerase III polC-type Pd630_LPD11031 DNA polymerase III polC-type Pd630_LPD01029 putative ATP-dependent helicase dinG Pd630_LPD00599 DNA polymerase III subunit gamma/tau Pd630_LPD00600 DNA polymerase III subunit gamma/tau Pd630_LPD05515 Single-stranded DNA-binding protein Pd630_LPD07778 Single-stranded DNA-binding protein Pd630_LPD00548 NaeI very short patch repair endonuclease Pd630_LPD06003 Exodeoxyribonuclease V beta chain Pd630_LPD06004 Exodeoxyribonuclease V gamma chain Pd630_LPD06002 Exodeoxyribonuclease V alpha chain Pd630_LPD03385 Protein RecA Pd630_LPD03519 Holliday junction ATP-dependent DNA helicase ruvA Pd630_LPD03520 Holliday junction ATP-dependent DNA helicase RuvB Pd630_LPD03518 Crossover junction endodeoxyribonuclease ruvC Pd630_LPD03903 Putative primosomal protein N' Pd630_LPD02502 Nuclease sbcCD subunit C Pd630_LPD02501 Nuclease sbcCD subunit D Pd630_LPD00902 DNA repair protein RadA Pd630_LPD00004 DNA replication and repair protein recF Pd630_LPD03186 ATP-dependent DNA helicase recG Pd630_LPD05326 DNA repair protein recO Pd630_LPD00612 Recombination protein recR Pd630_LPD05019 DNA repair protein recN Pd630_LPD05537 Uncharacterized protein yjgR Pd630_LPD03951 putative DNA repair protein Pd630_LPD04033 Putative DNA ligase-like protein Pd630_LPD01566 Putative DNA ligase-like protein Pd630_LPD09135 Putative DNA ligase-like protein Pd630_LPD11016 putative thermostable DNA ligase Pd630_LPD00016 DNA gyrase subunit A Pd630_LPD00009 DNA gyrase subunit B Pd630_LPD00800 DNA topoisomerase 1 Pd630_LPD03169 DNA-binding protein HU Pd630_LPD05408 putative ATP-dependent DNA helicase recQ Pd630_LPD05171 DNA polymerase IV 1 Pd630_LPD05856 DNA polymerase IV 2 Pd630_LPD05501 DNA polymerase IV 2 Pd630_LPD03863 hypothetical protein Pd630_LPD03409 LexA repressor Pd630_LPD03733 LexA repressor 1 Pd630_LPD02864 DNA polymerase IV Pd630_LPD02878 Error-prone DNA polymerase Pd630_LPD03386 Regulatory protein recX Pd630_LPD05568 putative ATP-dependent helicase dinG Pd630_LPD02927 putative ATP-dependent helicase lhr Pd630_LPD03170 putative mutator mutT1 protein Pd630_LPD05015 ADP-ribose pyrophosphatase Pd630_LPD03107 Ribonucleoside-diphosphate reductase subunit alpha Pd630_LPD03108 Ribonucleoside-diphosphate reductase subunit beta nrdF2 Pd630_LPD02868 R2-like ligand binding oxidase Pd630_LPD03313 Uncharacterized protein
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27] K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21] K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31] K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18] K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:5.6.2.4] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55] K01520 dut; dUTP diphosphatase [EC:3.6.1.23] K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33] K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27] K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21] K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2] K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2] K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2] K02335 polA; DNA polymerase I [EC:2.7.7.7] K03701 uvrA; excinuclease ABC subunit A K03701 uvrA; excinuclease ABC subunit A K03702 uvrB; excinuclease ABC subunit B K03703 uvrC; excinuclease ABC subunit C K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4] K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4] K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6] K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6] K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7] K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7] K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7] K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7] K03111 ssb; single-strand DNA-binding protein K03111 ssb; single-strand DNA-binding protein K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-] K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5] K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5] K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5] K03553 recA; recombination protein RecA K03550 ruvA; holliday junction DNA helicase RuvA K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4] K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10] K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4] K03546 sbcC; DNA repair protein SbcC/Rad50 K03547 sbcD; DNA repair protein SbcD/Mre11 K04485 radA; DNA repair protein RadA/Sms K03629 recF; DNA replication and repair protein RecF K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] K03584 recO; DNA repair protein RecO (recombination protein O) K06187 recR; recombination protein RecR K03631 recN; DNA repair protein RecN (Recombination protein N) K06915 herA; DNA double-strand break repair helicase HerA and related ATPase K10979 ku; DNA end-binding protein Ku K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2] K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2] K03168 topA; DNA topoisomerase I [EC:5.6.2.1] K03530 hupB; DNA-binding protein HU-beta K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4] K02346 dinB; DNA polymerase IV [EC:2.7.7.7] K02346 dinB; DNA polymerase IV [EC:2.7.7.7] K02346 dinB; DNA polymerase IV [EC:2.7.7.7] K01356 lexA; repressor LexA [EC:3.4.21.88] K01356 lexA; repressor LexA [EC:3.4.21.88] K01356 lexA; repressor LexA [EC:3.4.21.88] K14161 imuB; protein ImuB K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7] K03565 recX; regulatory protein K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3] K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4] K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69] K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58] K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
03029 Mitochondrial biogenesis [BR:roa03029]
09183 Protein families: signaling and cellular processes
09185 Viral protein families
09184 RNA family
09190 Not Included in Pathway or Brite
KEGG Orthology (KO) - Rhodococcus opacus PD630 KEGG Orthology (KO) - Rhodococcus opacus PD630