KEGG Orthology (KO) - Rhodococcus opacus PD630

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     KO
 09100 Metabolism
 
 09120 Genetic Information Processing
 
   09121 Transcription
 
   09122 Translation
 
   09123 Folding, sorting and degradation
     03060 Protein export [PATH:roa03060]
     04141 Protein processing in endoplasmic reticulum
     04130 SNARE interactions in vesicular transport
     04120 Ubiquitin mediated proteolysis
     04122 Sulfur relay system [PATH:roa04122]
     03050 Proteasome [PATH:roa03050]
     03018 RNA degradation [PATH:roa03018]
       Pd630_LPD05424 Ribonuclease E
       Pd630_LPD02394 Enolase
       Pd630_LPD13121 Enolase
       Pd630_LPD03321 Polyribonucleotide nucleotidyltransferase
       Pd630_LPD11006 Ribonuclease R
       Pd630_LPD09019 Ribonuclease R
       Pd630_LPD02677 Cold-shock DEAD box protein A
       Pd630_LPD05408 putative ATP-dependent DNA helicase recQ
       Pd630_LPD05614 Transcription termination factor Rho
       Pd630_LPD03367 Putative ribonuclease J
       Pd630_LPD02079 Chaperone protein DnaK
       Pd630_LPD03845 Chaperone protein DnaK
       Pd630_LPD02840 60 kDa chaperonin 2
       Pd630_LPD04557 60 kDa chaperonin 3
       Pd630_LPD06328 60 kDa chaperonin 1
       Pd630_LPD03171 Polyphosphate kinase
       Pd630_LPD00099 regulatory protein
       Pd630_LPD05800 polyphosphate kinase
       Pd630_LPD08032 CCA-adding enzyme
K08300 rne; ribonuclease E [EC:3.1.26.12]
K01689 ENO; enolase [EC:4.2.1.11]
K01689 ENO; enolase [EC:4.2.1.11]
K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
K12573 rnr; ribonuclease R [EC:3.1.13.1]
K12573 rnr; ribonuclease R [EC:3.1.13.1]
K05592 deaD; ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K03628 rho; transcription termination factor Rho
K12574 rnj; ribonuclease J [EC:3.1.-.-]
K04043 dnaK; molecular chaperone DnaK
K04043 dnaK; molecular chaperone DnaK
K04077 groEL; chaperonin GroEL
K04077 groEL; chaperonin GroEL
K04077 groEL; chaperonin GroEL
K00937 ppk; polyphosphate kinase [EC:2.7.4.1]
K22468 ppk2; polyphosphate kinase [EC:2.7.4.1]
K22468 ppk2; polyphosphate kinase [EC:2.7.4.1]
K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
 
   09124 Replication and repair
 
 09130 Environmental Information Processing
 
 09140 Cellular Processes
 
 09150 Organismal Systems
 
 09160 Human Diseases
 
 09180 Brite Hierarchies
 
   09181 Protein families: metabolism
 
   09182 Protein families: genetic information processing
     03000 Transcription factors [BR:roa03000]
     03021 Transcription machinery [BR:roa03021]
     03019 Messenger RNA biogenesis [BR:roa03019]
       Pd630_LPD06343 Cell division cycle protein 48
       Pd630_LPD05424 Ribonuclease E
       Pd630_LPD03193 Ribonuclease 3
       Pd630_LPD03367 Putative ribonuclease J
       Pd630_LPD11006 Ribonuclease R
       Pd630_LPD09019 Ribonuclease R
       Pd630_LPD05538 Oligoribonuclease
       Pd630_LPD02677 Cold-shock DEAD box protein A
       Pd630_LPD05408 putative ATP-dependent DNA helicase recQ
       Pd630_LPD02394 Enolase
       Pd630_LPD13121 Enolase
       Pd630_LPD03321 Polyribonucleotide nucleotidyltransferase
       Pd630_LPD05614 Transcription termination factor Rho
       Pd630_LPD02079 Chaperone protein DnaK
       Pd630_LPD03845 Chaperone protein DnaK
       Pd630_LPD02840 60 kDa chaperonin 2
       Pd630_LPD04557 60 kDa chaperonin 3
       Pd630_LPD06328 60 kDa chaperonin 1
       Pd630_LPD03171 Polyphosphate kinase
       Pd630_LPD00099 regulatory protein
       Pd630_LPD05800 polyphosphate kinase
       Pd630_LPD08032 CCA-adding enzyme
       Pd630_LPD00075 Putative regulator of ribonuclease activity
       Pd630_LPD03921 UPF0042 nucleotide-binding protein
K13525 VCP; transitional endoplasmic reticulum ATPase
K08300 rne; ribonuclease E [EC:3.1.26.12]
K03685 rnc; ribonuclease III [EC:3.1.26.3]
K12574 rnj; ribonuclease J [EC:3.1.-.-]
K12573 rnr; ribonuclease R [EC:3.1.13.1]
K12573 rnr; ribonuclease R [EC:3.1.13.1]
K13288 orn; oligoribonuclease [EC:3.1.-.-]
K05592 deaD; ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K01689 ENO; enolase [EC:4.2.1.11]
K01689 ENO; enolase [EC:4.2.1.11]
K00962 pnp; polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
K03628 rho; transcription termination factor Rho
K04043 dnaK; molecular chaperone DnaK
K04043 dnaK; molecular chaperone DnaK
K04077 groEL; chaperonin GroEL
K04077 groEL; chaperonin GroEL
K04077 groEL; chaperonin GroEL
K00937 ppk; polyphosphate kinase [EC:2.7.4.1]
K22468 ppk2; polyphosphate kinase [EC:2.7.4.1]
K22468 ppk2; polyphosphate kinase [EC:2.7.4.1]
K00970 pcnB; poly(A) polymerase [EC:2.7.7.19]
K02553 rraA; regulator of ribonuclease activity A
K06958 rapZ; RNase adapter protein RapZ
     03041 Spliceosome
     03011 Ribosome [BR:roa03011]
     03009 Ribosome biogenesis [BR:roa03009]
     03016 Transfer RNA biogenesis [BR:roa03016]
     03012 Translation factors [BR:roa03012]
     03110 Chaperones and folding catalysts [BR:roa03110]
     04131 Membrane trafficking [BR:roa04131]
     04121 Ubiquitin system [BR:roa04121]
     03051 Proteasome [BR:roa03051]
     03032 DNA replication proteins [BR:roa03032]
     03036 Chromosome and associated proteins [BR:roa03036]
     03400 DNA repair and recombination proteins [BR:roa03400]
       Pd630_LPD06524 Methylated-DNA--protein-cysteine methyltransferase
       Pd630_LPD06526 Methylated-DNA--protein-cysteine methyltransferase
       Pd630_LPD02150 Methylated-DNA--protein-cysteine methyltransferase
       Pd630_LPD01519 Deoxyribodipyrimidine photo-lyase
       Pd630_LPD03182 Uracil-DNA glycosylase
       Pd630_LPD05029 Putative 3-methyladenine DNA glycosylase
       Pd630_LPD00892 A/G-specific adenine DNA glycosylase
       Pd630_LPD00769 Endonuclease III
       Pd630_LPD05785 putative DNA ligase
       Pd630_LPD01465 putative DNA repair helicase RAD25
       Pd630_LPD02562 Putative mutator mutT2 protein
       Pd630_LPD06374 Putative mutator mutT3 protein
       Pd630_LPD07669 putative mutator mutT1 protein
       Pd630_LPD05132 hypothetical protein
       Pd630_LPD03452 Deoxyuridine 5'-triphosphate nucleotidohydrolase
       Pd630_LPD06522 Alpha-ketoglutarate-dependent dioxygenase AlkB
       Pd630_LPD02524 G/U mismatch-specific DNA glycosylase
       Pd630_LPD00380 DNA polymerase
       Pd630_LPD02574 Uncharacterized protein
       Pd630_LPD06521 putative bifunctional transcriptional activator/DNA repair enzyme AlkA
       Pd630_LPD02608 putative GMP synthase [glutamine-hydrolyzing]
       Pd630_LPD03194 Formamidopyrimidine-DNA glycosylase
       Pd630_LPD06428 Formamidopyrimidine-DNA glycosylase
       Pd630_LPD02926 Putative DNA glycosylase
       Pd630_LPD05495 Putative DNA glycosylase
       Pd630_LPD04331 DNA-(apurinic or apyrimidinic site) lyase
       Pd630_LPD02891 DNA-(apurinic or apyrimidinic site) lyase
       Pd630_LPD06361 Exodeoxyribonuclease III
       Pd630_LPD06062 putative endonuclease 4
       Pd630_LPD03134 DNA ligase
       Pd630_LPD05078 DNA polymerase I
       Pd630_LPD06519 DNA polymerase I
       Pd630_LPD04415 excinuclease ABC
       Pd630_LPD05054 UvrABC system protein A
       Pd630_LPD05062 UvrABC system protein B
       Pd630_LPD03920 UvrABC system protein C
       Pd630_LPD03043 ATP-dependent DNA helicase pcrA
       Pd630_LPD03048 putative DNA helicase II
       Pd630_LPD02168 ATP-dependent DNA helicase pcrA
       Pd630_LPD06132 DNA-directed RNA polymerase subunit beta
       Pd630_LPD06131 DNA-directed RNA polymerase subunit beta'
       Pd630_LPD02804 DNA-directed RNA polymerase subunit alpha
       Pd630_LPD03900 DNA-directed RNA polymerase subunit omega
       Pd630_LPD02376 Transcription-repair-coupling factor
       Pd630_LPD02495 Exodeoxyribonuclease 7 large subunit
       Pd630_LPD02494 Exodeoxyribonuclease 7 small subunit
       Pd630_LPD05163 DNA polymerase III subunit alpha
       Pd630_LPD00002 DNA polymerase III subunit beta
       Pd630_LPD05387 hypothetical protein
       Pd630_LPD00801 DNA polymerase III subunit gamma/tau
       Pd630_LPD05998 Tellurium resistance protein TerD
       Pd630_LPD05222 Uncharacterized protein
       Pd630_LPD01623 DNA polymerase III polC-type
       Pd630_LPD11031 DNA polymerase III polC-type
       Pd630_LPD01029 putative ATP-dependent helicase dinG
       Pd630_LPD00599 DNA polymerase III subunit gamma/tau
       Pd630_LPD00600 DNA polymerase III subunit gamma/tau
       Pd630_LPD05515 Single-stranded DNA-binding protein
       Pd630_LPD07778 Single-stranded DNA-binding protein
       Pd630_LPD00548 NaeI very short patch repair endonuclease
       Pd630_LPD06003 Exodeoxyribonuclease V beta chain
       Pd630_LPD06004 Exodeoxyribonuclease V gamma chain
       Pd630_LPD06002 Exodeoxyribonuclease V alpha chain
       Pd630_LPD03385 Protein RecA
       Pd630_LPD03519 Holliday junction ATP-dependent DNA helicase ruvA
       Pd630_LPD03520 Holliday junction ATP-dependent DNA helicase RuvB
       Pd630_LPD03518 Crossover junction endodeoxyribonuclease ruvC
       Pd630_LPD03903 Putative primosomal protein N'
       Pd630_LPD02502 Nuclease sbcCD subunit C
       Pd630_LPD02501 Nuclease sbcCD subunit D
       Pd630_LPD00902 DNA repair protein RadA
       Pd630_LPD00004 DNA replication and repair protein recF
       Pd630_LPD03186 ATP-dependent DNA helicase recG
       Pd630_LPD05326 DNA repair protein recO
       Pd630_LPD00612 Recombination protein recR
       Pd630_LPD05019 DNA repair protein recN
       Pd630_LPD03951 putative DNA repair protein
       Pd630_LPD04033 Putative DNA ligase-like protein
       Pd630_LPD01566 Putative DNA ligase-like protein
       Pd630_LPD09135 Putative DNA ligase-like protein
       Pd630_LPD11016 putative thermostable DNA ligase
       Pd630_LPD00016 DNA gyrase subunit A
       Pd630_LPD00009 DNA gyrase subunit B
       Pd630_LPD00800 DNA topoisomerase 1
       Pd630_LPD03169 DNA-binding protein HU
       Pd630_LPD05408 putative ATP-dependent DNA helicase recQ
       Pd630_LPD05171 DNA polymerase IV 1
       Pd630_LPD05856 DNA polymerase IV 2
       Pd630_LPD05501 DNA polymerase IV 2
       Pd630_LPD03863 hypothetical protein
       Pd630_LPD03409 LexA repressor
       Pd630_LPD03733 LexA repressor 1
       Pd630_LPD02864 DNA polymerase IV
       Pd630_LPD02878 Error-prone DNA polymerase
       Pd630_LPD03386 Regulatory protein recX
       Pd630_LPD05568 putative ATP-dependent helicase dinG
       Pd630_LPD02927 putative ATP-dependent helicase lhr
       Pd630_LPD03170 putative mutator mutT1 protein
       Pd630_LPD05015 ADP-ribose pyrophosphatase
       Pd630_LPD03107 Ribonucleoside-diphosphate reductase subunit alpha
       Pd630_LPD03108 Ribonucleoside-diphosphate reductase subunit beta nrdF2
       Pd630_LPD02868 R2-like ligand binding oxidase
       Pd630_LPD03313 Uncharacterized protein
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phrB; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03652 MPG; DNA-3-methyladenine glycosylase [EC:3.2.2.21]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTH; endonuclease III [EC:4.2.99.18]
K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
K10843 ERCC3; DNA excision repair protein ERCC-3 [EC:3.6.4.12]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP pyrophosphatase [EC:3.6.1.23]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K03649 mug; double-stranded uracil-DNA glycosylase [EC:3.2.2.28]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K05522 nei; endonuclease VIII [EC:3.2.2.- 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01151 nfo; deoxyribonuclease IV [EC:3.1.21.2]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03657 uvrD; DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03111 ssb; single-strand DNA-binding protein
K07458 vsr; DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
K03582 recB; exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
K03583 recC; exodeoxyribonuclease V gamma subunit [EC:3.1.11.5]
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA [EC:3.6.4.12]
K03551 ruvB; holliday junction DNA helicase RuvB [EC:3.6.4.12]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:3.6.4.12]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:3.6.4.12]
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
K23258 mutT1; 8-oxo-(d)GTP phosphatase [EC:3.6.1.69]
K01554 K01554; 8-oxo-dGDP phosphatase [EC:3.6.1.58]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
K06881 nrnA; bifunctional oligoribonuclease and PAP phosphatase NrnA [EC:3.1.3.7 3.1.13.3]
     03029 Mitochondrial biogenesis [BR:roa03029]
 
   09183 Protein families: signaling and cellular processes
 
   09184 RNA family
 
 09190 Not Included in Pathway or Brite

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Last updated: November 23, 2020