KEGG   PATHWAY: pki04622
Entry
pki04622                    Pathway                                
Name
RIG-I-like receptor signaling pathway - Paramormyrops kingsleyae
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
pki04622  RIG-I-like receptor signaling pathway
pki04622

Organism
Paramormyrops kingsleyae [GN:pki]
Gene
111859270  ddx58; probable ATP-dependent RNA helicase DDX58 [KO:K12646] [EC:3.6.4.13]
111849610  ifih1; interferon-induced helicase C domain-containing protein 1 [KO:K12647] [EC:3.6.4.13]
111835919  znfx1; NFX1-type zinc finger-containing protein 1 [KO:K27391]
111840252  NFX1-type zinc finger-containing protein 1-like isoform X1 [KO:K27391]
111835564  uncharacterized protein LOC111835564 [KO:K12648]
111835566  uncharacterized protein LOC111835566 [KO:K12648]
111855900  dhx58; probable ATP-dependent RNA helicase DHX58 [KO:K12649] [EC:3.6.4.13]
111843185  TNF receptor-associated factor 3-like [KO:K03174]
111860714  tank; TRAF family member-associated NF-kappa-B activator [KO:K12650]
111841682  azi2; 5-azacytidine-induced protein 2 [KO:K12651]
111845161  tbkbp1; TANK-binding kinase 1-binding protein 1 isoform X1 [KO:K12652]
111837508  ikbkg; NF-kappa-B essential modulator isoform X1 [KO:K07210]
111855295  NF-kappa-B essential modulator-like [KO:K07210]
111847018  tbk1; serine/threonine-protein kinase TBK1 isoform X1 [KO:K05410] [EC:2.7.11.10]
111854439  ikbke; inhibitor of nuclear factor kappa-B kinase subunit epsilon [KO:K07211] [EC:2.7.11.10]
111851276  irf3; interferon regulatory factor 3 isoform X1 [KO:K05411]
111859397  irf7; interferon regulatory factor 7 isoform X1 [KO:K09447]
111856012  interferon tau-3-like [KO:K05414]
111855896  interferon beta-like [KO:K05414]
111856795  interferon beta-like [KO:K05414]
111856801  interferon alpha-1/13-like isoform X1 [KO:K05414]
111856010  interferon a3-like [KO:K05414]
111851901  tradd; tumor necrosis factor receptor type 1-associated DEATH domain protein [KO:K03171]
111851812  fadd; FAS-associated death domain protein [KO:K02373]
111845914  ripk1; receptor-interacting serine/threonine-protein kinase 1 [KO:K02861] [EC:2.7.11.1]
111852220  caspase-8-like isoform X1 [KO:K04398] [EC:3.4.22.61]
111852221  caspase-8-like isoform X1 [KO:K04398] [EC:3.4.22.61]
111859672  caspase-8-like isoform X1 [KO:K04398] [EC:3.4.22.61]
111859671  caspase-8-like isoform X1 [KO:K04398] [EC:3.4.22.61]
111836749  chuk; inhibitor of nuclear factor kappa-B kinase subunit alpha [KO:K04467] [EC:2.7.11.10]
111854363  ikbkb; inhibitor of nuclear factor kappa-B kinase subunit beta [KO:K07209] [EC:2.7.11.10]
111852632  nfkbia; NF-kappa-B inhibitor alpha [KO:K04734]
111841750  NF-kappa-B inhibitor alpha-like [KO:K04734]
111833172  nfkb1; nuclear factor NF-kappa-B p105 subunit isoform X1 [KO:K02580]
111853948  nuclear factor NF-kappa-B p105 subunit-like [KO:K02580]
111851986  putative transcription factor p65 homolog [KO:K04735]
111855422  putative transcription factor p65 homolog [KO:K04735]
111847460  TNF receptor-associated factor 2-like [KO:K03173] [EC:2.3.2.27]
111848593  TNF receptor-associated factor 2-like [KO:K03173] [EC:2.3.2.27]
111835361  TNF receptor-associated factor 2-like [KO:K03173] [EC:2.3.2.27]
111858668  traf2; TNF receptor-associated factor 2 [KO:K03173] [EC:2.3.2.27]
111843005  map3k7; mitogen-activated protein kinase kinase kinase 7 isoform X1 [KO:K04427] [EC:2.7.11.25]
111841418  TNF receptor-associated factor 6-like isoform X1 [KO:K03175] [EC:2.3.2.27]
111859511  TNF receptor-associated factor 6-like [KO:K03175] [EC:2.3.2.27]
111834485  map3k1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
111850762  mitogen-activated protein kinase 9-like [KO:K04440] [EC:2.7.11.24]
111839372  mitogen-activated protein kinase 10-like isoform X1 [KO:K04440] [EC:2.7.11.24]
111850356  mapk8; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
111848368  mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
111852585  mapk10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
111855469  mitogen-activated protein kinase 9-like isoform X1 [KO:K04440] [EC:2.7.11.24]
111835993  mitogen-activated protein kinase 14A isoform X1 [KO:K04441] [EC:2.7.11.24]
111845666  mitogen-activated protein kinase 11-like isoform X1 [KO:K04441] [EC:2.7.11.24]
111845679  mitogen-activated protein kinase 12-like [KO:K04441] [EC:2.7.11.24]
111840348  mitogen-activated protein kinase 14A-like isoform X1 [KO:K04441] [EC:2.7.11.24]
111853904  mitogen-activated protein kinase 13-like [KO:K04441] [EC:2.7.11.24]
111856186  mitogen-activated protein kinase 14A-like isoform X1 [KO:K04441] [EC:2.7.11.24]
111850975  alveolar macrophage chemotactic factor-like [KO:K10030]
111836793  permeability factor 2-like [KO:K10030]
111836794  permeability factor 2-like isoform X1 [KO:K10030]
111850332  interleukin-8-like [KO:K10030]
111855477  interleukin-8-like [KO:K10030]
111838992  tumor necrosis factor-like [KO:K03156]
111841504  il12a; interleukin-12 subunit alpha isoform X1 [KO:K05406]
111847694  interleukin-12 subunit alpha-like isoform X1 [KO:K05406]
111839189  interleukin-12 subunit beta-like [KO:K05425]
111850579  interleukin-12 subunit beta-like isoform X1 [KO:K05425]
111860726  il12b; interleukin-12 subunit beta isoform X1 [KO:K05425]
111833439  C-X-C motif chemokine 11-1-like [KO:K12671]
111855478  C-X-C motif chemokine 3-like [KO:K12671]
111840888  adar; double-stranded RNA-specific adenosine deaminase [KO:K12968] [EC:3.5.4.37]
111855145  E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1 [KO:K10652] [EC:2.3.2.27]
111833479  E3 ubiquitin/ISG15 ligase TRIM25-like [KO:K10652] [EC:2.3.2.27]
111833577  E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1 [KO:K10652] [EC:2.3.2.27]
111836848  E3 ubiquitin/ISG15 ligase TRIM25-like [KO:K10652] [EC:2.3.2.27]
111858085  E3 ubiquitin/ISG15 ligase TRIM25-like [KO:K10652] [EC:2.3.2.27]
111832717  cyld; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
111835868  ubiquitin carboxyl-terminal hydrolase CYLD-like isoform X1 [KO:K08601] [EC:3.4.19.12]
111856452  ubiquitin carboxyl-terminal hydrolase CYLD-like isoform X1 [KO:K08601] [EC:3.4.19.12]
111860747  ubiquitin carboxyl-terminal hydrolase CYLD-like isoform X1 [KO:K08601] [EC:3.4.19.12]
111840908  atg5; autophagy protein 5 [KO:K08339]
111845781  atg12; ubiquitin-like protein ATG12 [KO:K08336]
111833843  nlrx1; NLR family member X1 isoform X1 [KO:K12653]
111852992  tmem173; stimulator of interferon genes protein isoform X1 [KO:K12654]
111851625  otud5; OTU domain-containing protein 5 isoform X1 [KO:K12655] [EC:3.4.19.12]
111857095  OTU domain-containing protein 5-A-like isoform X1 [KO:K12655] [EC:3.4.19.12]
111853930  sike1; suppressor of IKBKE 1 [KO:K12656]
111838121  ddx3x; ATP-dependent RNA helicase DDX3X isoform X1 [KO:K11594] [EC:5.6.2.7]
111856278  ATP-dependent RNA helicase DDX3X-like isoform X1 [KO:K11594] [EC:5.6.2.7]
111835107  pin1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [KO:K09578] [EC:5.2.1.8]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
pki04010  MAPK signaling pathway
pki04120  Ubiquitin mediated proteolysis
pki04210  Apoptosis
KO pathway
ko04622   
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