Entry
Name
Endocytosis - Buteo buteo (common buzzard)
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
BRITE hierarchy
Pathway map
Other DBs
Organism
Buteo buteo (common buzzard) [GN:
bbut ]
Gene
142026092 ARFGEF2; brefeldin A-inhibited guanine nucleotide-exchange protein 2 isoform X1 [KO:K18442 ]
142026449 ZFYVE16; zinc finger FYVE domain-containing protein 16 isoform X1 [KO:K04679 ]
142027142 ARFGAP1; ADP-ribosylation factor GTPase-activating protein 1 isoform X1 [KO:K12492 ]
142027238 PSD3; PH and SEC7 domain-containing protein 3 isoform X1 [KO:K12494 ]
142027369 SMAD2; mothers against decapentaplegic homolog 2 isoform X1 [KO:K04500 ]
142028399 IQSEC2; IQ motif and SEC7 domain-containing protein 2 [KO:K12495 ]
142029098 ARFGEF1; brefeldin A-inhibited guanine nucleotide-exchange protein 1 [KO:K18442 ]
142029141 CHMP4C; charged multivesicular body protein 4c isoform X1 [KO:K24782 ]
142029312 ASAP1; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K12488 ]
142029366 VPS28; vacuolar protein sorting-associated protein 28 homolog [KO:K12184 ]
142029421 ARAP2; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2 [KO:K18440 ]
142029845 WASL; actin nucleation-promoting factor WASL isoform X1 [KO:K23612 ]
142029989 RUFY2; RUN and FYVE domain-containing protein 2 isoform X1 [KO:K12482 ]
142029999 VPS26A; vacuolar protein sorting-associated protein 26A [KO:K18466 ]
142030172 GBF1; Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X1 [KO:K18443 ]
142030173 PSD; PH and SEC7 domain-containing protein 1 isoform X1 [KO:K12494 ]
142030467 VPS37A; vacuolar protein sorting-associated protein 37A isoform X1 [KO:K12185 ]
142030851 ACAP3; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3 [KO:K12489 ]
142030956 CAPZB; F-actin-capping protein subunit beta isoform X1 [KO:K10365 ]
142031048 AGAP1; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K12491 ]
142031383 BIN1; myc box-dependent-interacting protein 1 isoform X1 [KO:K12562 ]
142031502 STAM2; signal transducing adapter molecule 2 isoform X1 [KO:K04705 ]
142032295 ARFGAP2; ADP-ribosylation factor GTPase-activating protein 2 isoform X1 [KO:K12493 ]
142032711 ACAP2; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K12489 ]
142033385 VPS37D; vacuolar protein sorting-associated protein 37D [KO:K12185 ]
142033523 SH3KBP1; SH3 domain-containing kinase-binding protein 1 isoform X1 [KO:K12470 ]
142034143 VPS26B; vacuolar protein sorting-associated protein 26B [KO:K18466 ]
142034475 VTA1; vacuolar protein sorting-associated protein VTA1 homolog isoform X1 [KO:K12199 ]
142034557 IGF2R; cation-independent mannose-6-phosphate receptor [KO:K06564 ]
142034817 VPS25; vacuolar protein-sorting-associated protein 25 isoform X1 [KO:K12189 ]
142035214 EPS15; epidermal growth factor receptor substrate 15 isoform X1 [KO:K12472 ]
142035686 EPS15L1; epidermal growth factor receptor substrate 15-like 1 isoform X1 [KO:K12472 ]
142036523 VPS4A; vacuolar protein sorting-associated protein 4A [KO:K12196 ]
142036700 VPS35; vacuolar protein sorting-associated protein 35 isoform X1 [KO:K18468 ]
142036978 VPS45; vacuolar protein sorting-associated protein 45 isoform X1 [KO:K12479 ]
142037174 VPS29; vacuolar protein sorting-associated protein 29 isoform X1 [KO:K18467 ]
142037214 VPS37B; vacuolar protein sorting-associated protein 37B isoform X1 [KO:K12185 ]
142037762 ACAP1; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K12489 ]
142037858 AGAP3; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12491 ]
142037871 RAB11FIP5; rab11 family-interacting protein 5 isoform X1 [KO:K12484 ]
142038239 RAB11FIP1; rab11 family-interacting protein 1 isoform X1 [KO:K12484 ]
142038595 HGS; hepatocyte growth factor-regulated tyrosine kinase substrate isoform X1 [KO:K12182 ]
142038703 RAB11FIP4; rab11 family-interacting protein 4 isoform X1 [KO:K12485 ]
142038828 SMAD3; mothers against decapentaplegic homolog 3 isoform X1 [KO:K23605 ]
142039590 VPS36; vacuolar protein-sorting-associated protein 36 [KO:K12190 ]
142039683 SMAP1; stromal membrane-associated protein 1 isoform X1 [KO:K12486 ]
142040059 SMAP2; stromal membrane-associated protein 2 isoform X1 [KO:K12486 ]
142040136 LDLRAP1; low density lipoprotein receptor adapter protein 1 [KO:K12474 ]
142040177 ASAP3; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12488 ]
142040280 TSG101; tumor susceptibility gene 101 protein isoform X1 [KO:K12183 ]
142040356 STAM; signal transducing adapter molecule 1 isoform X1 [KO:K04705 ]
142040472 VPS37C; vacuolar protein sorting-associated protein 37C [KO:K12185 ]
142040852 ASAP2; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K12488 ]
142041244 AGAP2; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K17848 ]
142041459 ARAP1; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K18439 ]
142041723 IL2RB; interleukin-2 receptor subunit beta isoform X1 [KO:K05069 ]
142041856 IQSEC3; IQ motif and SEC7 domain-containing protein 3 [KO:K12495 ]
142042079 WIPF3; WAS/WASL-interacting protein family member 3 isoform X1 [KO:K19475 ]
142042206 ARFGAP3; ADP-ribosylation factor GTPase-activating protein 3 isoform X1 [KO:K12493 ]
142042276 VPS4B; vacuolar protein sorting-associated protein 4B [KO:K12196 ]
142042835 IQSEC1; IQ motif and SEC7 domain-containing protein 1 isoform X1 [KO:K12495 ]
142043837 ARPC5L; actin-related protein 2/3 complex subunit 5-like protein [KO:K05754 ]
142044144 PDCD6IP; programmed cell death 6-interacting protein isoform X1 [KO:K12200 ]
142044184 RUFY1; RUN and FYVE domain-containing protein 1 isoform X1 [KO:K12482 ]
142044244 ARAP3; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12490 ]
142045535 CAPZA2; F-actin-capping protein subunit alpha-2 isoform X1 [KO:K10364 ]
142045623 RAB11FIP3; rab11 family-interacting protein 3 isoform X1 [KO:K12485 ]
Compound
C04549 1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637 1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981 Phosphatidylinositol-3,4,5-trisphosphate
C11556 1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
Authors
Acconcia F, Sigismund S, Polo S
Title
Ubiquitin in trafficking: the network at work.
Journal
Reference
Authors
Donaldson JG, Porat-Shliom N, Cohen LA
Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
Journal
Reference
Authors
Sorkin A
Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
Journal
Reference
Authors
Raiborg C, Stenmark H
Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
Journal
Reference
Authors
Scita G, Di Fiore PP
Title
The endocytic matrix.
Journal
Reference
Authors
Le Roy C, Wrana JL
Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
Journal
Reference
Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
Title
The early endosome: a busy sorting station for proteins at the crossroads.
Journal
Reference
Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
Title
Viral entry, lipid rafts and caveosomes.
Journal
Reference
Authors
Grant BD, Donaldson JG
Title
Pathways and mechanisms of endocytic recycling.
Journal
Reference
Authors
Cullen PJ, Korswagen HC
Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
Journal
Related pathway
bbut04060 Cytokine-cytokine receptor interaction
bbut04070 Phosphatidylinositol signaling system
bbut04130 SNARE interactions in vesicular transport
KO pathway