KEGG   PATHWAY: caty04120
Entry
caty04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Cercocebus atys (sooty mangabey)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
caty04120  Ubiquitin mediated proteolysis
caty04120

Other DBs
GO: 0016567
Organism
Cercocebus atys (sooty mangabey) [GN:caty]
Gene
105571934  UBB; polyubiquitin-B [KO:K04551]
105578351  ubiquitin-like [KO:K02927]
105601708  UBA52; ubiquitin-60S ribosomal protein L40 isoform X1 [KO:K02927]
105595668  ubiquitin-like [KO:K02927]
105575340  ubiquitin-like [KO:K02927]
105576398  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
105590513  UBA1; ubiquitin-like modifier-activating enzyme 1 isoform X1 [KO:K03178] [EC:6.2.1.45]
105595199  SAE1; SUMO-activating enzyme subunit 1 isoform X1 [KO:K10684] [EC:6.2.1.45]
105578140  UBA2; SUMO-activating enzyme subunit 2 isoform X1 [KO:K10685] [EC:6.2.1.45]
105585673  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
105573708  UBA7; ubiquitin-like modifier-activating enzyme 7 isoform X1 [KO:K10698] [EC:6.2.1.45]
105596088  UBA6; ubiquitin-like modifier-activating enzyme 6 isoform X1 [KO:K10699] [EC:6.2.1.45]
105598385  UBE2A; ubiquitin-conjugating enzyme E2 A isoform X1 [KO:K10573] [EC:2.3.2.23]
105599770  ubiquitin-conjugating enzyme E2 B-like [KO:K10574] [EC:2.3.2.23]
105588490  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
105583183  LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 C-like [KO:K06688] [EC:2.3.2.23]
105599865  UBE2D2; ubiquitin-conjugating enzyme E2 D2 isoform X1 [KO:K06689] [EC:2.3.2.23]
105571375  UBE2D3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
105581530  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
105596920  UBE2D4; ubiquitin-conjugating enzyme E2 D4 isoform X1 [KO:K06689] [EC:2.3.2.23]
105578287  UBE2E1; ubiquitin-conjugating enzyme E2 E1 isoform X1 [KO:K20217] [EC:2.3.2.23]
105578290  UBE2E2; ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
105579892  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
105577989  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
105583688  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
105575539  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
105598569  UBE2H; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
105573972  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
105588982  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
105572435  UBE2J2; ubiquitin-conjugating enzyme E2 J2 isoform X1 [KO:K04554] [EC:2.3.2.23]
105584839  UBE2K; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
105598241  UBE2L3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
105600792  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 [KO:K04553] [EC:2.3.2.23]
105587656  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
105595577  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
105573388  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
105581097  ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
105597804  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
105598099  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
105583935  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
105577689  UBE2O; E2/E3 hybrid ubiquitin-protein ligase UBE2O isoform X1 [KO:K10581] [EC:2.3.2.24]
105593494  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 isoform X1 [KO:K10582] [EC:2.3.2.23]
105585977  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
105601322  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
105594106  ubiquitin-conjugating enzyme E2 Q2-like [KO:K10582] [EC:2.3.2.23]
105574034  LOW QUALITY PROTEIN: uncharacterized protein LOC105574034 [KO:K10582] [EC:2.3.2.23]
105590070  UBE2R2; ubiquitin-conjugating enzyme E2 R2 isoform X1 [KO:K02207] [EC:2.3.2.23]
105591673  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
105582758  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
105595928  UBE2U; ubiquitin-conjugating enzyme E2 U [KO:K10584] [EC:2.3.2.23]
105585273  UBE2W; ubiquitin-conjugating enzyme E2 W isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
105579470  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
105578397  BIRC6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
105592996  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
105573408  UBE3B; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
105591479  UBE3C; ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
105590760  SMURF2; E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
105584377  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
105582292  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
105572885  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
105580379  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
105591651  TRIP12; E3 ubiquitin-protein ligase TRIP12 [KO:K10590] [EC:2.3.2.26]
105601114  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
105589970  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
105598627  HUWE1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
105586555  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
105601167  HERC1; probable E3 ubiquitin-protein ligase HERC1 [KO:K10594] [EC:2.3.2.26]
105593011  HERC2; E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
105576737  HERC3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
105597229  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
105582473  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
105580960  UBE4B; ubiquitin conjugation factor E4 B [KO:K10597] [EC:2.3.2.27]
105574288  STUB1; E3 ubiquitin-protein ligase CHIP isoform X1 [KO:K09561] [EC:2.3.2.27]
105598235  PPIL2; peptidyl-prolyl cis-trans isomerase-like 2 [KO:K10598] [EC:5.2.1.8]
105572992  PRPF19; pre-mRNA-processing factor 19 isoform X1 [KO:K10599] [EC:2.3.2.27]
105582152  UBOX5; RING finger protein 37 isoform X1 [KO:K10600]
105600499  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
105582510  CBL; E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
105599650  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
105595121  CBLC; E3 ubiquitin-protein ligase CBL-C isoform X1 [KO:K22518] [EC:2.3.2.27]
105594235  PARK2; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
105600696  E3 ubiquitin-protein ligase SIAH1-like [KO:K04506] [EC:2.3.2.27]
105589111  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
105573504  PML; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
105586809  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
105599635  MAP3K1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
105572384  E3 ubiquitin-protein ligase RFWD2-like [KO:K10143] [EC:2.3.2.27]
105597590  RFWD2; E3 ubiquitin-protein ligase RFWD2 isoform X1 [KO:K10143] [EC:2.3.2.27]
105576868  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
105591400  BIRC3; baculoviral IAP repeat-containing protein 3 isoform X1 [KO:K16060]
105591401  BIRC2; baculoviral IAP repeat-containing protein 2 isoform X1 [KO:K16060]
105586304  XIAP; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
105591186  BIRC8; LOW QUALITY PROTEIN: baculoviral IAP repeat-containing protein 8 [KO:K04725] [EC:2.3.2.27]
105592333  BIRC7; baculoviral IAP repeat-containing protein 7 isoform X1 [KO:K16061]
105600969  PIAS1; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
105592531  PIAS2; E3 SUMO-protein ligase PIAS2 [KO:K16063] [EC:2.3.2.-]
105592852  PIAS3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
105591798  PIAS4; E3 SUMO-protein ligase PIAS4 isoform X1 [KO:K16065] [EC:2.3.2.27]
105577453  SYVN1; E3 ubiquitin-protein ligase synoviolin isoform X1 [KO:K10601] [EC:2.3.2.27]
105572583  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
105575517  AIRE; autoimmune regulator isoform X1 [KO:K10603]
105572116  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
105579705  BRCA1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
105576421  FANCL; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
105574731  MID1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
105600419  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
105583398  TRIM37; E3 ubiquitin-protein ligase TRIM37 [KO:K10608] [EC:2.3.2.27]
105572541  RBX1; E3 ubiquitin-protein ligase RBX1 isoform X1 [KO:K03868] [EC:2.3.2.32]
105584691  CUL1; cullin-1 isoform X1 [KO:K03347]
105599767  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
105581652  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
105581859  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
105583426  SKP2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
105580703  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
105580862  FBXO2; F-box only protein 2 isoform X1 [KO:K10099]
105583478  FBXO4; F-box only protein 4 isoform X1 [KO:K10291]
105597003  CUL2; cullin-2 isoform X1 [KO:K03870]
105584562  transcription elongation factor B polypeptide 1 [KO:K03872]
105585276  TCEB1; transcription elongation factor B polypeptide 1 isoform X1 [KO:K03872]
105596337  transcription elongation factor B polypeptide 1-like [KO:K03872]
105572043  TCEB2; transcription elongation factor B polypeptide 2 isoform X1 [KO:K03873]
105585775  VHL; von Hippel-Lindau disease tumor suppressor isoform X1 [KO:K03871]
105586984  CUL3; cullin-3 isoform X1 [KO:K03869]
105601447  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
105598406  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
105591334  KLHL9; kelch-like protein 9 [KO:K10447]
105579215  RHOBTB2; rho-related BTB domain-containing protein 2 isoform X1 [KO:K07868]
105581503  RHOBTB1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
105584941  CUL4A; cullin-4A isoform X1 [KO:K10609]
105598358  CUL4B; cullin-4B isoform X1 [KO:K10609]
105577597  DDB1; DNA damage-binding protein 1 [KO:K10610]
105592813  DDB2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
105572011  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
105592425  DET1; DET1 homolog isoform X1 [KO:K10571]
105586353  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
105588734  CUL5; LOW QUALITY PROTEIN: cullin-5 [KO:K10612]
105572173  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
105577646  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
105591487  CUL7; cullin-7 isoform X1 [KO:K10613]
105592736  FBXW8; F-box/WD repeat-containing protein 8 isoform X1 [KO:K10264]
105588589  ANAPC11; anaphase-promoting complex subunit 11 isoform X1 [KO:K03358]
105580614  ANAPC2; anaphase-promoting complex subunit 2 isoform X1 [KO:K03349]
105594641  CDC20; cell division cycle protein 20 homolog [KO:K03363]
105591780  FZR1; fizzy-related protein homolog isoform X1 [KO:K03364]
105591191  ANAPC1; anaphase-promoting complex subunit 1 [KO:K03348]
105590703  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
105578986  ANAPC4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
105591086  ANAPC5; anaphase-promoting complex subunit 5 [KO:K03352]
105584982  CDC16; cell division cycle protein 16 homolog [KO:K03353]
105573407  ANAPC7; anaphase-promoting complex subunit 7 [KO:K03354]
105599832  CDC23; cell division cycle protein 23 homolog isoform X1 [KO:K03355]
105580760  ANAPC10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
105600976  CDC26; anaphase-promoting complex subunit CDC26 isoform X1 [KO:K03359]
105586419  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
105578802  ANAPC15; anaphase-promoting complex subunit 15 [KO:K25228]
105597300  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
caty03050  Proteasome
KO pathway
ko04120   
LinkDB

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