KEGG   PATHWAY: cdk04120
Entry
cdk04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Camelus dromedarius (Arabian camel)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
cdk04120  Ubiquitin mediated proteolysis
cdk04120

Other DBs
GO: 0016567
Organism
Camelus dromedarius (Arabian camel) [GN:cdk]
Gene
105084335  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
105084343  FBXO4; LOW QUALITY PROTEIN: F-box only protein 4 [KO:K10291]
105084729  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
105084946  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
105085081  UBB; polyubiquitin-B [KO:K08770]
105085195  CUL1; cullin-1 [KO:K03347]
105085287  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
105085380  UBE2H; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
105085461  DET1; DET1 homolog isoform X1 [KO:K10571]
105085580  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
105085988  CUL2; cullin-2 isoform X1 [KO:K03870]
105086287  PRKN; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
105086323  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
105086996  SKP2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
105087133  MAP3K1; LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
105087177  BIRC2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
105087178  BIRC3; baculoviral IAP repeat-containing protein 3 [KO:K16060]
105087220  UBE2Q2; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 Q2 [KO:K10582] [EC:2.3.2.23]
105087276  PML; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
105087339  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
105087630  UBA7; ubiquitin-like modifier-activating enzyme 7 isoform X1 [KO:K10698] [EC:6.2.1.45]
105087634  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
105087708  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
105087832  UBE2C; ubiquitin-conjugating enzyme E2 C isoform X1 [KO:K06688] [EC:2.3.2.23]
105088294  CUL3; cullin-3 isoform X1 [KO:K03869]
105088391  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
105088497  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
105088550  ELOC; elongin-C [KO:K03872]
105088551  UBE2W; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
105088649  CUL7; cullin-7 [KO:K10613]
105088671  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
105088979  UBE3C; ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
105089066  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
105089124  UBE2Q1; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
105089192  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 isoform X1 [KO:K10602] [EC:2.3.2.27]
105089334  UBE2K; ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
105089376  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
105089563  UBE2D3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
105090169  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
105090203  CBL; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
105090262  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
105090300  UBE2B; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
105090429  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
105090493  BRCA1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
105090529  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X4 [KO:K10593] [EC:2.3.2.26]
105090638  CDC23; cell division cycle protein 23 homolog [KO:K03355]
105090766  HERC2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
105090788  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
105090909  CDC20; cell division cycle protein 20 homolog [KO:K03363]
105091167  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
105091213  ANAPC10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
105091340  CUL4A; cullin-4A [KO:K10609]
105091452  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
105091565  HERC3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
105091911  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
105092151  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
105092186  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X3 [KO:K10581] [EC:2.3.2.24]
105092318  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
105092484  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
105093118  VHL; von Hippel-Lindau disease tumor suppressor [KO:K03871]
105093280  PIAS1; E3 SUMO-protein ligase PIAS1 isoform X2 [KO:K04706] [EC:2.3.2.-]
105093407  CDC34; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
105093737  ANAPC1; anaphase-promoting complex subunit 1 [KO:K03348]
105093853  RHOBTB1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
105093874  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
105093894  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
105093922  KLHL13; kelch-like protein 13 isoform X4 [KO:K10447]
105093933  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
105094340  UBC; LOW QUALITY PROTEIN: polyubiquitin-C [KO:K08770]
105094885  DDB1; DNA damage-binding protein 1 [KO:K10610]
105094892  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
105095216  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 isoform X1 [KO:K10598] [EC:5.2.1.8]
105095218  UBE2L3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
105095258  UBA3; NEDD8-activating enzyme E1 catalytic subunit [KO:K10686] [EC:6.2.1.64]
105095469  CBLC; E3 ubiquitin-protein ligase CBL-C isoform X1 [KO:K22518] [EC:2.3.2.27]
105095492  CDC16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
105095533  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
105095609  BIRC6; LOW QUALITY PROTEIN: baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
105095616  [KO:K20217] [EC:2.3.2.23]
105095618  [KO:K20217] [EC:2.3.2.23]
105095703  BIRC7; baculoviral IAP repeat-containing protein 7 isoform X1 [KO:K16061]
105095758  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
105095775  UBE2Z; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
105096033  UBOX5; RING finger protein 37 isoform X1 [KO:K10600] [EC:2.3.2.27]
105096606  CUL5; cullin-5 [KO:K10612]
105096682  ANAPC15; anaphase-promoting complex subunit 15 isoform X2 [KO:K25228]
105096697  HUWE1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
105096724  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
105096792  UBE2M; NEDD8-conjugating enzyme Ubc12 isoform X2 [KO:K10579] [EC:2.3.2.34]
105097221  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
105097234  FANCL; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
105097410  UBE2N; ubiquitin-conjugating enzyme E2 N isoform X3 [KO:K10580] [EC:2.3.2.23]
105097583  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
105097816  [KO:K10608] [EC:2.3.2.27]
105098116  UBE2D2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
105098371  ANAPC4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
105098441  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
105098734  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
105098783  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
105098886  XIAP; E3 ubiquitin-protein ligase XIAP isoform X2 [KO:K04725] [EC:2.3.2.27]
105098890  CUL4B; cullin-4B isoform X1 [KO:K10609]
105099400  SMURF1; E3 ubiquitin-protein ligase SMURF1 [KO:K04678] [EC:2.3.2.26]
105099655  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
105099696  ELOB; elongin-B [KO:K03873]
105099753  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
105099839  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
105099992  COP1; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase COP1 [KO:K10143] [EC:2.3.2.27]
105100518  HERC1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
105100695  MID1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
105101086  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
105101227  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 isoform X2 [KO:K04553] [EC:2.3.2.23]
105101495  UBA6; ubiquitin-like modifier-activating enzyme 6 isoform X1 [KO:K10699] [EC:6.2.1.45]
105101519  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
105101957  UBA1; ubiquitin-like modifier-activating enzyme 1 isoform X1 [KO:K03178] [EC:6.2.1.45]
105102495  ANAPC7; anaphase-promoting complex subunit 7 isoform X1 [KO:K03354]
105102507  ANAPC5; anaphase-promoting complex subunit 5 [KO:K03352]
105102525  RHOBTB2; rho-related BTB domain-containing protein 2 [KO:K07868]
105102642  SYVN1; E3 ubiquitin-protein ligase synoviolin isoform X1 [KO:K10601] [EC:2.3.2.27]
105102657  FZR1; fizzy-related protein homolog isoform X1 [KO:K03364]
105102868  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
105103744  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
105103994  AIRE; autoimmune regulator [KO:K10603]
105104048  SAE1; SUMO-activating enzyme subunit 1 isoform X1 [KO:K10684] [EC:6.2.1.45]
105104916  FBXW8; F-box/WD repeat-containing protein 8 isoform X1 [KO:K10264]
105105073  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
105105300  PIAS4; E3 SUMO-protein ligase PIAS4 isoform X1 [KO:K16065] [EC:2.3.2.27]
105105361  UBE3B; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
105105458  KLHL9; kelch-like protein 9 isoform X1 [KO:K10447]
105105581  UBE2J2; ubiquitin-conjugating enzyme E2 J2 isoform X1 [KO:K04554] [EC:2.3.2.23]
105105881  PIAS3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
105106182  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
105106389  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
105106823  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
105106872  DDB2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
105107008  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
105107028  FBXO2; F-box only protein 2 [KO:K10099]
105107122  UBE2U; ubiquitin-conjugating enzyme E2 U [KO:K10584] [EC:2.3.2.23]
116151679  [KO:K02927]
116152716  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
cdk03050  Proteasome
KO pathway
ko04120   

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