KEGG   PATHWAY: csyr04120
Entry
csyr04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Carlito syrichta (Philippine tarsier)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
csyr04120  Ubiquitin mediated proteolysis
csyr04120

Other DBs
GO: 0016567
Organism
Carlito syrichta (Philippine tarsier) [GN:csyr]
Gene
103249239  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
103249354  UBOX5; RING finger protein 37 isoform X2 [KO:K10600]
103249427  DDB1; DNA damage-binding protein 1 [KO:K10610]
103249432  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
103249485  [KO:K02207] [EC:2.3.2.23]
103250087  STUB1; E3 ubiquitin-protein ligase CHIP isoform X1 [KO:K09561] [EC:2.3.2.27]
103250092  UBE2J2; ubiquitin-conjugating enzyme E2 J2 isoform X1 [KO:K04554] [EC:2.3.2.23]
103250164  PIAS4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
103250174  FBXW8; F-box/WD repeat-containing protein 8 [KO:K10264]
103250373  [KO:K06643] [EC:2.3.2.27]
103250595  [KO:K04551]
103250646  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X2 [KO:K10581] [EC:2.3.2.24]
103251139  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
103251244  HUWE1; E3 ubiquitin-protein ligase HUWE1 [KO:K10592] [EC:2.3.2.26]
103251545  BIRC3; baculoviral IAP repeat-containing protein 3 [KO:K16060]
103251546  [KO:K16060]
103251762  CDC16; cell division cycle protein 16 homolog [KO:K03353]
103251854  UBA52; ubiquitin-60S ribosomal protein L40 isoform X1 [KO:K02927]
103251986  SKP2; S-phase kinase-associated protein 2 [KO:K03875]
103252024  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
103252227  UBE4A; ubiquitin conjugation factor E4 A isoform X1 [KO:K10596] [EC:2.3.2.27]
103252257  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
103252292  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
103252591  PML; protein PML [KO:K10054] [EC:2.3.2.-]
103252620  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
103252738  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
103252766  UBE2H; ubiquitin-conjugating enzyme E2 H isoform X2 [KO:K10576] [EC:2.3.2.23]
103252910  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
103253038  [KO:K06689] [EC:2.3.2.23]
103255197  [KO:K10580] [EC:2.3.2.23]
103255528  UBE2D3; ubiquitin-conjugating enzyme E2 D3 isoform X3 [KO:K06689] [EC:2.3.2.23]
103256030  FBXO4; F-box only protein 4 isoform X1 [KO:K10291]
103257175  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X2 [KO:K05633] [EC:2.3.2.26]
103257507  RFWD2; E3 ubiquitin-protein ligase RFWD2 isoform X2 [KO:K10143] [EC:2.3.2.27]
103257612  CUL5; cullin-5 [KO:K10612]
103257765  ANAPC5; anaphase-promoting complex subunit 5 [KO:K03352]
103258413  FANCL; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
103258754  AIRE; autoimmune regulator [KO:K10603]
103258768  UBE2E1; ubiquitin-conjugating enzyme E2 E1 isoform X1 [KO:K20217] [EC:2.3.2.23]
103258771  [KO:K20217] [EC:2.3.2.23]
103258867  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
103259344  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
103259527  DET1; DET1 homolog isoform X1 [KO:K10571]
103259599  UBE2D4; ubiquitin-conjugating enzyme E2 D4 isoform X1 [KO:K06689] [EC:2.3.2.23]
103259672  CDC26; anaphase-promoting complex subunit CDC26 isoform X1 [KO:K03359]
103259717  CUL1; cullin-1 isoform X1 [KO:K03347]
103259743  UBR5; E3 ubiquitin-protein ligase UBR5 [KO:K10593] [EC:2.3.2.26]
103260086  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
103260108  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 [KO:K04553] [EC:2.3.2.23]
103260277  UBE2C; ubiquitin-conjugating enzyme E2 C isoform X1 [KO:K06688] [EC:2.3.2.23]
103260376  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
103260397  SYVN1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
103260444  CDC20; cell division cycle protein 20 homolog [KO:K03363]
103260489  RBX1; E3 ubiquitin-protein ligase RBX1 isoform X2 [KO:K03868] [EC:2.3.2.32]
103260577  CUL2; cullin-2 [KO:K03870]
103260903  HERC1; probable E3 ubiquitin-protein ligase HERC1 isoform X2 [KO:K10594] [EC:2.3.2.26]
103261208  DDB2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
103261288  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
103261704  CDC23; cell division cycle protein 23 homolog [KO:K03355]
103261855  ANAPC4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
103262278  CUL3; cullin-3 [KO:K03869]
103262405  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
103262550  FBXW7; F-box/WD repeat-containing protein 7 isoform X2 [KO:K10260]
103262775  ANAPC11; anaphase-promoting complex subunit 11 isoform X2 [KO:K03358]
103262855  UBE2U; ubiquitin-conjugating enzyme E2 U [KO:K10584] [EC:2.3.2.23]
103263671  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
103263898  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
103264024  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
103264237  BIRC6; baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
103264244  PIAS1; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
103264418  ERCC8; DNA excision repair protein ERCC-8 isoform X2 [KO:K10570]
103264606  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
103264737  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
103264907  UBB; polyubiquitin-B [KO:K04551]
103265389  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
103265428  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X3 [KO:K10590] [EC:2.3.2.26]
103265440  PPIL2; peptidyl-prolyl cis-trans isomerase-like 2 [KO:K10598] [EC:5.2.1.8]
103265518  UBA7; ubiquitin-like modifier-activating enzyme 7 [KO:K10698] [EC:6.2.1.45]
103265603  ELOB; elongin-B [KO:K03873]
103265913  RHOBTB2; rho-related BTB domain-containing protein 2 [KO:K07868]
103265984  [KO:K10573] [EC:2.3.2.23]
103266633  [KO:K10580] [EC:2.3.2.23]
103267342  RHOBTB1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
103267438  UBA3; NEDD8-activating enzyme E1 catalytic subunit [KO:K10686] [EC:6.2.1.64]
103267614  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X3 [KO:K13305] [EC:2.3.2.26]
103267647  CUL4A; cullin-4A [KO:K10609]
103267879  BRCA1; breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
103268136  FBXW11; F-box/WD repeat-containing protein 11 isoform X2 [KO:K03362]
103268310  UBE2B; ubiquitin-conjugating enzyme E2 B isoform X2 [KO:K10574] [EC:2.3.2.23]
103268314  SKP1; S-phase kinase-associated protein 1 isoform X2 [KO:K03094]
103268445  PIAS3; E3 SUMO-protein ligase PIAS3 [KO:K16064] [EC:2.3.2.-]
103268498  ANAPC15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
103268543  CUL7; cullin-7 isoform X1 [KO:K10613]
103268549  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
103268591  [KO:K06688] [EC:2.3.2.23]
103268593  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
103268772  [KO:K03364]
103269011  KLHL13; kelch-like protein 13 isoform X3 [KO:K10447]
103269146  UBE2L3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
103269587  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
103269634  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
103269711  UBE3C; ubiquitin-protein ligase E3C isoform X5 [KO:K10589] [EC:2.3.2.26]
103269858  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
103269958  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
103270082  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
103270724  CBL; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
103270761  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
103270861  MID1; E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
103271171  UBE4B; ubiquitin conjugation factor E4 B isoform X3 [KO:K10597] [EC:2.3.2.27]
103271229  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
103271577  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
103271596  UBE3A; ubiquitin-protein ligase E3A isoform X2 [KO:K10587] [EC:2.3.2.26]
103271776  UBA1; ubiquitin-like modifier-activating enzyme 1 isoform X2 [KO:K03178] [EC:6.2.1.45]
103271993  [KO:K06689] [EC:2.3.2.23]
103272536  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
103272835  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
103272866  CBLC; E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
103272928  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
103273038  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
103273074  [KO:K03094]
103273297  [KO:K04725] [EC:2.3.2.27]
103273345  ELOC; elongin-C isoform X2 [KO:K03872]
103273350  UBE2W; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
103273703  UBA6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
103273726  ANAPC7; anaphase-promoting complex subunit 7 [KO:K03354]
103274018  [KO:K02927]
103274043  ANAPC10; anaphase-promoting complex subunit 10 isoform X2 [KO:K03357]
103274160  [KO:K10447]
103274643  [KO:K10595] [EC:2.3.2.26]
103275015  UBE3B; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
103275086  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
103275212  CUL4B; cullin-4B isoform X1 [KO:K10609]
103275496  SMURF1; E3 ubiquitin-protein ligase SMURF1 [KO:K04678] [EC:2.3.2.26]
103276205  UBE2A; ubiquitin-conjugating enzyme E2 A isoform X1 [KO:K10573] [EC:2.3.2.23]
103277138  [KO:K10580] [EC:2.3.2.23]
103277203  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
103277406  BIRC7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
110594692  [KO:K02927]
110596262  [KO:K02977]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
csyr03050  Proteasome
KO pathway
ko04120   

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