KEGG   PATHWAY: dgt03420
Entry
dgt03420                    Pathway                                
Name
Nucleotide excision repair - Dendronephthya gigantea (soft corals)
Description
Nucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the NER pathway are linked to at least three diseases: xeroderma pigmentosum (XP), Cockayne syndrome (CS), and trichothiodystrophy (TTD). The repair of damaged DNA involves at least 30 polypeptides within two different sub-pathways of NER known as transcription-coupled repair (TCR-NER) and global genome repair (GGR-NER). TCR refers to the expedited repair of lesions located in the actively transcribed strand of genes by RNA polymerase II (RNAP II). In GGR-NER the first step of damage recognition involves XPC-hHR23B complex together with XPE complex (in prokaryotes, uvrAB complex). The following steps of GGR-NER and TCR-NER are similar.
Class
Genetic Information Processing; Replication and repair
Pathway map
dgt03420  Nucleotide excision repair
dgt03420

Other DBs
GO: 0006289
Organism
Dendronephthya gigantea (soft corals) [GN:dgt]
Gene
114515758  [KO:K03010] [EC:2.7.7.6]
114516474  [KO:K10739]
114516756  [KO:K03011]
114518270  [KO:K10840]
114518445  [KO:K03012]
114518839  [KO:K03144]
114519284  [KO:K10841]
114519524  [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
114519933  [KO:K06634]
114520481  [KO:K03505]
114520489  [KO:K03142]
114520893  [KO:K10740]
114521436  [KO:K10610]
114521983  [KO:K10838]
114522121  [KO:K23720]
114522242  [KO:K10844] [EC:5.6.2.3]
114522480  [KO:K02202] [EC:2.7.11.22 2.7.11.23]
114522528  [KO:K03008]
114523112  [KO:K04802]
114523404  [KO:K10755]
114523640  [KO:K10756]
114523703  [KO:K03143]
114523714  [KO:K02324] [EC:2.7.7.7]
114523736  [KO:K10755]
114524591  [KO:K03504]
114524717  [KO:K03006] [EC:2.7.7.6]
114524732  [KO:K10846]
114525068  [KO:K02325] [EC:2.7.7.7]
114526314  [KO:K10848] [EC:3.1.-.-]
114526356  [KO:K03014]
114526433  [KO:K10843] [EC:5.6.2.4]
114526905  [KO:K10756]
114527138  [KO:K03016]
114527193  [KO:K10839]
114528463  [KO:K10754]
114529020  [KO:K02328]
114529100  [KO:K10849]
114530307  [KO:K03868] [EC:2.3.2.32]
114530909  [KO:K02326] [EC:2.7.7.7]
114532443  [KO:K03015]
114532473  [KO:K03017]
114533853  [KO:K10847]
114534850  [KO:K02327] [EC:2.7.7.7]
114535902  [KO:K03013]
114536290  [KO:K03506] [EC:2.7.7.7]
114536702  [KO:K03141]
114536922  [KO:K10570]
114540528  [KO:K07466]
114540721  [KO:K10609]
114540983  [KO:K02325] [EC:2.7.7.7]
114542563  [KO:K07466]
114542895  [KO:K02327] [EC:2.7.7.7]
114544199  [KO:K03141]
114544272  [KO:K03141]
Reference
  Authors
Sugasawa K.
  Title
[Molecular mechanism of mammalian nucleotide excision repair]
  Journal
Tanpakushitsu Kakusan Koso 46:893-901 (2001)
Reference
  Authors
Nakatsu Y.
  Title
[Transcription-coupled repair and Cockayne syndrome]
  Journal
Tanpakushitsu Kakusan Koso 46:908-15 (2001)
Reference
  Authors
Nakagawa N, Masui R, Kuramitsu S.
  Title
[Structure and function of DNA repair enzyme UvrB from Thermus thermophilus HB8]
  Journal
Tanpakushitsu Kakusan Koso 46:968-75 (2001)
Reference
  Authors
Kraemer KH, Patronas NJ, Schiffmann R, Brooks BP, Tamura D, DiGiovanna JJ.
  Title
Xeroderma pigmentosum, trichothiodystrophy and Cockayne syndrome: a complex genotype-phenotype relationship.
  Journal
Neuroscience 145:1388-96 (2007)
DOI:10.1016/j.neuroscience.2006.12.020
Reference
  Authors
Saldivar JS, Wu X, Follen M, Gershenson D.
  Title
Nucleotide excision repair pathway review I: implications in ovarian cancer and platinum sensitivity.
  Journal
Gynecol Oncol 107:S56-71 (2007)
DOI:10.1016/j.ygyno.2007.07.043
Reference
  Authors
Sugasawa K.
  Title
[DNA repair pathways involving Cul4A ubiquitin ligases]
  Journal
Tanpakushitsu Kakusan Koso 51:1339-44 (2006)
Reference
  Authors
Ito S, Ando D, Tanaka K.
  Title
[Cross-talk between DNA repair and transcription: molecular mechanism and disorders]
  Journal
Tanpakushitsu Kakusan Koso 52:1823-31 (2007)
Related
pathway
dgt03020  RNA polymerase
dgt04120  Ubiquitin mediated proteolysis
KO pathway
ko03420   

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