KEGG   PATHWAY: mbez04120
Entry
mbez04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Moschus berezovskii (Chinese forest musk deer)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
mbez04120  Ubiquitin mediated proteolysis
mbez04120

Other DBs
GO: 0016567
Organism
Moschus berezovskii (Chinese forest musk deer) [GN:mbez]
Gene
129534963  [KO:K04506] [EC:2.3.2.27]
129534994  [KO:K04506] [EC:2.3.2.27]
129535157  [KO:K03357]
129535270  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
129535590  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
129535751  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
129536227  [KO:K04506] [EC:2.3.2.27]
129536465  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
129536546  [KO:K02977]
129537627  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
129537659  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
129538110  HERC2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
129538290  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
129538385  [KO:K03094]
129538647  CUL3; cullin-3 isoform X1 [KO:K03869]
129538972  ANAPC1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
129539065  ANAPC2; LOW QUALITY PROTEIN: anaphase-promoting complex subunit 2 [KO:K03349]
129539211  [KO:K02977]
129539224  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
129539673  BIRC6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
129539935  [KO:K02977]
129540050  FANCL; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
129540517  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
129540636  CDC20; cell division cycle protein 20 homolog [KO:K03363]
129540976  [KO:K10577]
129541095  [KO:K02977]
129541332  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
129541536  PIAS3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
129542168  [KO:K03359]
129542179  FBXW8; F-box/WD repeat-containing protein 8 isoform X1 [KO:K10264]
129542189  UBE3B; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
129542251  ANAPC10; anaphase-promoting complex subunit 10 [KO:K03357]
129542469  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
129542506  UBE2L3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
129542527  UBC; LOW QUALITY PROTEIN: polyubiquitin-C [KO:K08770]
129542534  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
129542545  ANAPC5; anaphase-promoting complex subunit 5 [KO:K03352]
129542630  ANAPC7; anaphase-promoting complex subunit 7 isoform X1 [KO:K03354]
129543252  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
129543510  CUL7; cullin-7 isoform X1 [KO:K10613]
129543871  [KO:K10684] [EC:6.2.1.45]
129544184  UBB; polyubiquitin-B [KO:K08770]
129544285  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
129544459  BRCA1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
129544524  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
129544554  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
129544604  ANAPC11; anaphase-promoting complex subunit 11 isoform X1 [KO:K03358]
129544661  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
129544689  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X1 [KO:K10581] [EC:2.3.2.24]
129545090  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
129545128  [KO:K03873]
129545200  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
129545217  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
129545291  ELOB; elongin-B [KO:K03873]
129545342  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
129545732  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
129546030  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
129546361  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
129546623  SAE1; SUMO-activating enzyme subunit 1 isoform X1 [KO:K10684] [EC:6.2.1.45]
129546690  CBLC; E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
129546889  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
129546946  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 [KO:K05630] [EC:2.3.2.26]
129547032  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
129547127  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
129547849  UBA7; ubiquitin-like modifier-activating enzyme 7 isoform X1 [KO:K10698] [EC:6.2.1.45]
129548004  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
129548072  VHL; von Hippel-Lindau disease tumor suppressor [KO:K03871]
129548213  UBE2D4; ubiquitin-conjugating enzyme E2 D4 isoform X1 [KO:K06689] [EC:2.3.2.23]
129548432  AIRE; autoimmune regulator [KO:K10603]
129548609  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
129548785  SYVN1; E3 ubiquitin-protein ligase synoviolin isoform X1 [KO:K10601] [EC:2.3.2.27]
129548893  DDB1; DNA damage-binding protein 1 [KO:K10610]
129548913  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
129549022  [KO:K03872]
129549353  [KO:K10580] [EC:2.3.2.23]
129549460  UBE2E1; ubiquitin-conjugating enzyme E2 E1 isoform X1 [KO:K20217] [EC:2.3.2.23]
129549462  [KO:K20217] [EC:2.3.2.23]
129549466  [KO:K03094]
129549804  [KO:K02977]
129549827  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
129549878  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
129550007  [KO:K03875]
129550196  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
129550259  DET1; DET1 homolog [KO:K10571]
129550267  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
129550415  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
129550473  PML; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
129551348  COP1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
129551407  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
129551516  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
129551535  FBXO2; F-box only protein 2 [KO:K10099]
129552056  [KO:K03347]
129552639  UBE2H; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
129552744  CUL1; cullin-1 isoform X1 [KO:K03347]
129552816  UBE3C; ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
129553143  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
129553219  [KO:K03872]
129553235  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
129553244  MAP3K1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
129553293  FBXO4; F-box only protein 4 isoform X1 [KO:K10291]
129553317  SKP2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
129553384  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
129553454  [KO:K10580] [EC:2.3.2.23]
129554248  [KO:K16060]
129554250  BIRC3; baculoviral IAP repeat-containing protein 3 [KO:K16060]
129554294  CUL5; cullin-5 isoform X1 [KO:K10612]
129554382  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
129554414  CBL; E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
129554627  ANAPC15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
129554762  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
129554810  BIRC7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
129554816  DDB2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
129554857  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 [KO:K04553] [EC:2.3.2.23]
129555427  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
129555601  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
129555733  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
129555787  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
129555809  RHOBTB1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
129555879  [KO:K10685] [EC:6.2.1.45]
129556525  CUL4A; cullin-4A [KO:K10609]
129556539  CDC16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
129556895  RHOBTB2; rho-related BTB domain-containing protein 2 [KO:K07868]
129556906  [KO:K02927]
129556944  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
129557071  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
129557205  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
129557406  [KO:K04506] [EC:2.3.2.27]
129557417  CUL2; cullin-2 isoform X1 [KO:K03870]
129557543  KLHL9; kelch-like protein 9 [KO:K10447]
129558265  FZR1; fizzy-related protein homolog isoform X1 [KO:K03364]
129558291  CDC23; cell division cycle protein 23 homolog [KO:K03355]
129558297  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
129558365  [KO:K20217] [EC:2.3.2.23]
129558476  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
129558639  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
129558699  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
129558773  PIAS4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
129559524  UBE2D2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
129559558  UBE2B; ubiquitin-conjugating enzyme E2 B isoform X1 [KO:K10574] [EC:2.3.2.23]
129559950  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
129560399  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
129560473  UBE2W; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
129560474  ELOC; elongin-C [KO:K03872]
129560678  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
129561338  PRKN; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
129561485  UBA6; ubiquitin-like modifier-activating enzyme 6 isoform X1 [KO:K10699] [EC:6.2.1.45]
129561502  HERC3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
129561593  UBE2D3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
129561636  [KO:K06689] [EC:2.3.2.23]
129561779  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
129561850  ANAPC4; anaphase-promoting complex subunit 4 [KO:K03351]
129562188  UBE2K; ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
129562390  HERC1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
129562471  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
129562587  ITCH; E3 ubiquitin-protein ligase Itchy homolog [KO:K05632] [EC:2.3.2.26]
129562980  PIAS1; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
129564120  MID1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
129564122  UBA1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
129564223  HUWE1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
129564246  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
129564296  XIAP; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
129564360  CUL4B; cullin-4B isoform X1 [KO:K10609]
129564389  [KO:K16060]
129564541  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
129564612  [KO:K02977]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
mbez03050  Proteasome
KO pathway
ko04120   

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