KEGG   PATHWAY: msyl00510
Entry
msyl00510                   Pathway                                
Name
N-Glycan biosynthesis - Malus sylvestris (European crab apple)
Description
N-glycans or asparagine-linked glycans are major constituents of glycoproteins in eukaryotes. N-glycans are covalently attached to asparagine with the consensus sequence of Asn-X-Ser/Thr by an N-glycosidic bond, GlcNAc b1- Asn. Biosynthesis of N-glycans begins on the cytoplasmic face of the ER membrane with the transferase reaction of UDP-GlcNAc and the lipid-like precursor P-Dol (dolichol phosphate) to generate GlcNAc a1- PP-Dol. After sequential addition of monosaccharides by ALG glycosyltransferases [MD:M00055], the N-glycan precursor is attached by the OST (oligosaccharyltransferase) complex to the polypeptide chain that is being synthesized and translocated through the ER membrane. The protein-bound N-glycan precursor is subsequently trimmed, extended, and modified in the ER and Golgi by a complex series of reactions catalyzed by membrane-bound glycosidases and glycosyltransferases. N-glycans thus synthesized are classified into three types: high-mannose type, complex type, and hybrid type. Defects in N-glycan biosynthesis lead to a variety of human diseases known as congenital disorders of glycosylation [DS:H00118 H00119].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
msyl00510  N-Glycan biosynthesis
msyl00510

Module
msyl_M00072  N-glycosylation by oligosaccharyltransferase [PATH:msyl00510]
msyl_M00073  N-glycan precursor trimming [PATH:msyl00510]
Other DBs
GO: 0006487
Organism
Malus sylvestris (European crab apple) [GN:msyl]
Gene
126583274  [KO:K00736] [EC:2.4.1.143]
126583467  [KO:K00737] [EC:2.4.1.144]
126583615  [KO:K01231] [EC:3.2.1.114]
126583982  [KO:K01230] [EC:3.2.1.113]
126584942  [KO:K12345] [EC:1.3.1.22 1.3.1.94]
126585389  [KO:K12667]
126585508  [KO:K03842] [EC:2.4.1.142]
126585576  [KO:K07441] [EC:2.4.1.141]
126585664  [KO:K00726] [EC:2.4.1.101]
126585793  [KO:K23741]
126586326  [KO:K19478]
126586807  [KO:K09659]
126587300  [KO:K12670]
126587991  [KO:K12668]
126589764  [KO:K03845] [EC:2.4.1.258]
126589925  [KO:K03846] [EC:2.4.1.259 2.4.1.261]
126589953  [KO:K03843] [EC:2.4.1.132 2.4.1.257]
126590134  [KO:K00902] [EC:2.7.1.108]
126592992  [KO:K07252] [EC:3.6.1.43]
126593576  [KO:K03850] [EC:2.4.1.256]
126593818  [KO:K01001] [EC:2.7.8.15]
126596096  [KO:K07151] [EC:2.4.99.18]
126596495  [KO:K01230] [EC:3.2.1.113]
126596980  [KO:K01228] [EC:3.2.1.106]
126597586  [KO:K00737] [EC:2.4.1.144]
126599731  [KO:K07151] [EC:2.4.99.18]
126600605  [KO:K01001] [EC:2.7.8.15]
126601737  [KO:K07151] [EC:2.4.99.18]
126601914  [KO:K05546] [EC:3.2.1.207]
126603335  [KO:K28202]
126603360  [KO:K03848] [EC:2.4.1.267]
126603410  [KO:K00737] [EC:2.4.1.144]
126603916  [KO:K12670]
126605099  [KO:K26502]
126605686  [KO:K26502]
126607219  [KO:K09658]
126607990  [KO:K00737] [EC:2.4.1.144]
126608145  [KO:K01228] [EC:3.2.1.106]
126608146  [KO:K01228] [EC:3.2.1.106]
126608401  [KO:K26501]
126608402  [KO:K26501]
126610645  [KO:K01231] [EC:3.2.1.114]
126610728  [KO:K00736] [EC:2.4.1.143]
126611362  [KO:K01230] [EC:3.2.1.113]
126612370  [KO:K00737] [EC:2.4.1.144]
126613743  [KO:K03849] [EC:2.4.1.265]
126614327  [KO:K03845] [EC:2.4.1.258]
126615855  [KO:K03846] [EC:2.4.1.259 2.4.1.261]
126618520  [KO:K07252] [EC:3.6.1.43]
126619064  [KO:K07432] [EC:2.4.1.141]
126619448  [KO:K00729] [EC:2.4.1.117]
126620252  [KO:K03850] [EC:2.4.1.256]
126620906  [KO:K19478]
126621123  [KO:K23741]
126621301  [KO:K00726] [EC:2.4.1.101]
126621530  [KO:K12668]
126621743  [KO:K12667]
126623373  [KO:K09659]
126623621  [KO:K07441] [EC:2.4.1.141]
126624141  [KO:K03842] [EC:2.4.1.142]
126624197  [KO:K12670]
126624671  [KO:K12345] [EC:1.3.1.22 1.3.1.94]
126625307  [KO:K07151] [EC:2.4.99.18]
126625328  [KO:K12666]
126625680  [KO:K09658]
126626398  [KO:K12666]
126626534  [KO:K00721] [EC:2.4.1.83]
126629558  [KO:K12666]
126630415  [KO:K03844] [EC:2.4.1.131]
126630514  [KO:K00729] [EC:2.4.1.117]
126630549  [KO:K03847] [EC:2.4.1.260]
126631504  [KO:K03848] [EC:2.4.1.267]
126633710  [KO:K03844] [EC:2.4.1.131]
Compound
C00096  GDP-mannose
C00110  Dolichyl phosphate
C00381  Dolichol
C00621  Dolichyl diphosphate
C01246  Dolichyl beta-D-glucosyl phosphate
C03021  Protein asparagine
C03862  Dolichyl phosphate D-mannose
C06081  Polyprenol
C22974  ditrans,polycis-Polyprenal
C22975  Dolichal
G00001  N-Acetyl-D-glucosaminyldiphosphodolichol
G00002  N,N'-Chitobiosyldiphosphodolichol
G00003  
G00004  
G00005  
G00006  
G00007  
G00008  
G00009  
G00010  
G00011  
G00012  
G00013  
G00014  
G00015  
G00016  Core fucose
G00017  
G00018  DS 3
G00019  
G00020  
G00021  
G00022  
G00171  
G10526  
G10595  
G10596  
G10597  
G10598  
G10599  
G10694  
Reference
PMID:9111134
  Authors
Schutzbach JS.
  Title
The role of the lipid matrix in the biosynthesis of dolichyl-linked oligosaccharides.
  Journal
Glycoconj J 14:175-82 (1997)
DOI:10.1023/A:1018533620002
Reference
  Authors
Oriol R, Martinez-Duncker I, Chantret I, Mollicone R, Codogno P.
  Title
Common origin and evolution of glycosyltransferases using Dol-P-monosaccharides as donor substrate.
  Journal
Mol Biol Evol 19:1451-63 (2002)
DOI:10.1093/oxfordjournals.molbev.a004208
Reference
  Authors
Thiel C, Schwarz M, Peng J, Grzmil M, Hasilik M, Braulke T, Kohlschutter A, von Figura K, Lehle L, Korner C.
  Title
A new type of congenital disorders of glycosylation (CDG-Ii) provides new insights into the early steps of dolichol-linked oligosaccharide biosynthesis.
  Journal
J Biol Chem 278:22498-505 (2003)
DOI:10.1074/jbc.M302850200
Reference
  Authors
Cipollo JF, Trimble RB, Chi JH, Yan Q, Dean N.
  Title
The yeast ALG11 gene specifies addition of the terminal alpha 1,2-Man to the Man5GlcNAc2-PP-dolichol N-glycosylation intermediate formed on the cytosolic side of the endoplasmic reticulum.
  Journal
J Biol Chem 276:21828-40 (2001)
DOI:10.1074/jbc.M010896200
Reference
  Authors
Frank CG, Aebi M.
  Title
ALG9 mannosyltransferase is involved in two different steps of lipid-linked oligosaccharide biosynthesis.
  Journal
Glycobiology 15:1156-63 (2005)
DOI:10.1093/glycob/cwj002
Reference
  Authors
O'Reilly MK, Zhang G, Imperiali B.
  Title
In vitro evidence for the dual function of Alg2 and Alg11: essential mannosyltransferases in N-linked glycoprotein biosynthesis.
  Journal
Biochemistry 45:9593-603 (2006)
DOI:10.1021/bi060878o
Related
pathway
msyl00051  Fructose and mannose metabolism
msyl00511  Other glycan degradation
msyl00513  Various types of N-glycan biosynthesis
msyl00520  Amino sugar and nucleotide sugar metabolism
msyl00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
msyl00900  Terpenoid backbone biosynthesis
KO pathway
ko00510   

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