KEGG   PATHWAY: mun04120
Entry
mun04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Meriones unguiculatus (Mongolian gerbil)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
mun04120  Ubiquitin mediated proteolysis
mun04120

Other DBs
GO: 0016567
Organism
Meriones unguiculatus (Mongolian gerbil) [GN:mun]
Gene
110539331  Ube3a; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
110539372  Cop1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
110539393  Uba1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
110539644  [KO:K03872]
110539746  Cul4b; cullin-4B isoform X1 [KO:K10609]
110539792  [KO:K06689] [EC:2.3.2.23]
110540066  Trim37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
110540421  [KO:K03178] [EC:6.2.1.45]
110540431  [KO:K02977]
110540535  Cblb; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
110540632  Ube2d1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
110541239  Klhl13; kelch-like protein 13 isoform X1 [KO:K10447]
110541492  [KO:K02977]
110542035  Klhl9; kelch-like protein 9 [KO:K10447]
110542115  Xiap; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
110543957  [KO:K02927]
110544136  [KO:K06689] [EC:2.3.2.23]
110544282  Ube2a; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
110545083  Ube2g2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
110545320  Anapc7; anaphase-promoting complex subunit 7 isoform X1 [KO:K03354]
110545327  Anapc5; anaphase-promoting complex subunit 5 isoform X1 [KO:K03352]
110545413  [KO:K06689] [EC:2.3.2.23]
110545634  Cdc27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
110545938  Mgrn1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
110545975  Elob; elongin-B [KO:K03873]
110546083  Ube2d4; ubiquitin-conjugating enzyme E2 D4 isoform X1 [KO:K06689] [EC:2.3.2.23]
110546132  Ercc8; DNA excision repair protein ERCC-8 isoform X3 [KO:K10570]
110546169  Wwp2; NEDD4-like E3 ubiquitin-protein ligase WWP2 [KO:K05630] [EC:2.3.2.26]
110546616  Nedd4l; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
110546648  Map3k1; mitogen-activated protein kinase kinase kinase 1 isoform X3 [KO:K04416] [EC:2.7.11.25]
110547040  Smurf2; E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
110547126  Ube2r2; ubiquitin-conjugating enzyme E2 R2 isoform X1 [KO:K02207] [EC:2.3.2.23]
110547264  Ube3b; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
110547369  Ube2j1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
110547501  Cul1; cullin-1 [KO:K03347]
110547815  Fbxw11; F-box/WD repeat-containing protein 11 isoform X5 [KO:K03362]
110547832  Anapc10; anaphase-promoting complex subunit 10 [KO:K03357]
110548072  Ddb1; DNA damage-binding protein 1 isoform X2 [KO:K10610]
110548088  Prpf19; pre-mRNA-processing factor 19 isoform X1 [KO:K10599] [EC:2.3.2.27]
110548152  Fbxo2; F-box only protein 2 [KO:K10099]
110548154  Ube4b; ubiquitin conjugation factor E4 B isoform X2 [KO:K10597] [EC:2.3.2.27]
110548403  [KO:K02927]
110548502  [KO:K02977]
110548514  Fzr1; fizzy-related protein homolog [KO:K03364]
110548719  Stub1; E3 ubiquitin-protein ligase CHIP isoform X2 [KO:K09561] [EC:2.3.2.27]
110548728  Ube2i; SUMO-conjugating enzyme UBC9 [KO:K10577]
110548824  Anapc11; anaphase-promoting complex subunit 11 [KO:K03358]
110548945  Vhl; von Hippel-Lindau disease tumor suppressor [KO:K03871]
110549095  Ube4a; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
110549134  Nedd4; E3 ubiquitin-protein ligase NEDD4 isoform X4 [KO:K10591] [EC:2.3.2.26]
110549162  Uba52; ubiquitin-ribosomal protein eL40 fusion protein [KO:K02927]
110549284  Herc1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
110549320  Syvn1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
110549422  Ube2c; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
110549467  Cul5; cullin-5 [KO:K10612]
110549623  Ube2b; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
110549633  Skp1; S-phase kinase-associated protein 1 isoform X2 [KO:K03094]
110549711  Nhlrc1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
110549783  Ubb; polyubiquitin-B [KO:K08770]
110550317  Socs3; suppressor of cytokine signaling 3 [KO:K04696]
110550336  Cul7; cullin-7 isoform X1 [KO:K10613]
110550385  Ube2ql1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
110550435  Rbx1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
110550529  Pias1; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
110550572  Itch; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
110550733  Ddb2; DNA damage-binding protein 2 [KO:K10140]
110550902  Brca1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
110550975  Ube2h; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
110551267  Uba2; SUMO-activating enzyme subunit 2 isoform X1 [KO:K10685] [EC:6.2.1.45]
110551292  Cdc16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
110551371  Cdc34; ubiquitin-conjugating enzyme E2 R1 isoform X1 [KO:K02207] [EC:2.3.2.23]
110551399  Anapc1; anaphase-promoting complex subunit 1 [KO:K03348]
110551651  Uba3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
110551841  Fbxw8; F-box/WD repeat-containing protein 8 [KO:K10264]
110551968  Ube2l6; ubiquitin/ISG15-conjugating enzyme E2 L6 isoform X3 [KO:K04553] [EC:2.3.2.23]
110551982  Ube2q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
110552133  [KO:K20217] [EC:2.3.2.23]
110552134  Ube2e1; ubiquitin-conjugating enzyme E2 E1 isoform X2 [KO:K20217] [EC:2.3.2.23]
110552206  Ube2e3; ubiquitin-conjugating enzyme E2 E3 isoform X2 [KO:K20217] [EC:2.3.2.23]
110552292  Anapc16; anaphase-promoting complex subunit 16 isoform X1 [KO:K25229]
110552438  Det1; DET1 homolog [KO:K10571]
110552508  Fbxw7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
110552883  Cul3; cullin-3 isoform X1 [KO:K03869]
110552922  Cdc20; cell division cycle protein 20 homolog [KO:K03363]
110553421  Ube2z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
110553751  Birc3; baculoviral IAP repeat-containing protein 3 isoform X1 [KO:K16060]
110553757  Birc2; baculoviral IAP repeat-containing protein 2 isoform X4 [KO:K16060]
110553799  Ppil2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
110554080  Ube2d2; ubiquitin-conjugating enzyme E2 D2 isoform X2 [KO:K06689] [EC:2.3.2.23]
110554313  Ube2f; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
110554559  Ubc; polyubiquitin-C [KO:K08770]
110554792  Birc7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
110554829  Pml; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
110554861  Prkn; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
110554868  Herc4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
110555271  Socs1; suppressor of cytokine signaling 1 [KO:K04694]
110555295  Rnf7; RING-box protein 2 isoform X1 [KO:K10611]
110555375  Rhobtb1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
110555423  Rchy1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
110555554  Ube2u; ubiquitin-conjugating enzyme E2 U isoform X1 [KO:K10584] [EC:2.3.2.23]
110555570  Cdc26; anaphase-promoting complex subunit CDC26 [KO:K03359]
110555610  Pias4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
110555644  Smurf1; E3 ubiquitin-protein ligase SMURF1 isoform X3 [KO:K04678] [EC:2.3.2.26]
110555683  [KO:K06688] [EC:2.3.2.23]
110555771  Keap1; kelch-like ECH-associated protein 1 [KO:K10456]
110556100  Aire; autoimmune regulator isoform X1 [KO:K10603]
110556200  Btrc; F-box/WD repeat-containing protein 1A isoform X4 [KO:K03362]
110556264  [KO:K12456]
110556462  Herc3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
110556561  [KO:K02977]
110556831  [KO:K25228]
110556887  Trip12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
110556927  Ubr5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
110557011  Anapc2; anaphase-promoting complex subunit 2 [KO:K03349]
110557079  Rhobtb2; rho-related BTB domain-containing protein 2 [KO:K07868]
110557352  Rps27a; ubiquitin-ribosomal protein eS31 fusion protein [KO:K02977]
110557497  Traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
110557542  Anapc15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
110557616  Eloc; elongin-C [KO:K03872]
110557696  Fancl; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
110557936  Birc6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
110557958  Herc2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
110558295  Cul2; cullin-2 isoform X2 [KO:K03870]
110558357  [KO:K02977]
110558390  Anapc13; anaphase-promoting complex subunit 13 [KO:K12456]
110558470  Cdc23; cell division cycle protein 23 homolog [KO:K03355]
110558601  Ube2d3; ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
110558616  Ubox5; RING finger protein 37 isoform X1 [KO:K10600] [EC:2.3.2.27]
110558702  Anapc4; anaphase-promoting complex subunit 4 [KO:K03351]
110559206  Ube2l3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
110559374  Ube2n; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
110559734  Cul4a; cullin-4A isoform X1 [KO:K10609]
110559915  [KO:K04552] [EC:2.3.2.23]
110560202  Ube2j2; ubiquitin-conjugating enzyme E2 J2 isoform X1 [KO:K04554] [EC:2.3.2.23]
110560313  Pias3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
110560655  Siah1; E3 ubiquitin-protein ligase SIAH1 [KO:K04506] [EC:2.3.2.27]
110561075  Ube2s; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
110561124  Ube2g1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
110561304  Trim32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
110561314  Sae1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
110561467  [KO:K10580] [EC:2.3.2.23]
110561701  [KO:K02977]
110562047  Ube2q1; ubiquitin-conjugating enzyme E2 Q1 isoform X1 [KO:K10582] [EC:2.3.2.23]
110562053  Ube2k; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
110562241  Mdm2; E3 ubiquitin-protein ligase Mdm2 isoform X2 [KO:K06643] [EC:2.3.2.27]
110562462  [KO:K10582] [EC:2.3.2.23]
110562520  [KO:K16063] [EC:2.3.2.-]
110562581  Cbl; E3 ubiquitin-protein ligase CBL isoform X2 [KO:K04707] [EC:2.3.2.27]
110562936  Ube2m; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
110563143  Fbxo4; F-box only protein 4 [KO:K10291]
110563993  Mid1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
110564672  Ube2o; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X1 [KO:K10581] [EC:2.3.2.24]
110564745  Ube3c; ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
110564806  Pias2; E3 SUMO-protein ligase PIAS2 isoform X2 [KO:K16063] [EC:2.3.2.-]
110564958  Uba7; ubiquitin-like modifier-activating enzyme 7 isoform X2 [KO:K10698] [EC:6.2.1.45]
110565189  Wwp1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
110565429  Uba6; ubiquitin-like modifier-activating enzyme 6 isoform X1 [KO:K10699] [EC:6.2.1.45]
110565890  Huwe1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
110566051  Skp2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
132649061  [KO:K02977]
132651891  [KO:K03178] [EC:6.2.1.45]
132651912  [KO:K03178] [EC:6.2.1.45]
132651914  [KO:K03178] [EC:6.2.1.45]
132651915  [KO:K03178] [EC:6.2.1.45]
132651916  [KO:K03178] [EC:6.2.1.45]
132651917  [KO:K03178] [EC:6.2.1.45]
132654751  Ube2w; ubiquitin-conjugating enzyme E2 W isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
132657109  [KO:K04552] [EC:2.3.2.23]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
mun03050  Proteasome
KO pathway
ko04120   

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