KEGG   PATHWAY: oaa04120
Entry
oaa04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Ornithorhynchus anatinus (platypus)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
oaa04120  Ubiquitin mediated proteolysis
oaa04120

Other DBs
GO: 0016567
Organism
Ornithorhynchus anatinus (platypus) [GN:oaa]
Gene
100074541  UBC; polyubiquitin-C isoform X1 [KO:K08770]
100077981  polyubiquitin-C isoform X1 [KO:K08770]
100077847  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
100078088  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
100079248  UBA1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
100093563  SAE1; SUMO-activating enzyme subunit 1 isoform X1 [KO:K10684] [EC:6.2.1.45]
100079275  UBA2; SUMO-activating enzyme subunit 2 isoform X1 [KO:K10685] [EC:6.2.1.45]
100078310  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X4 [KO:K10686] [EC:6.2.1.64]
100092397  UBA7; ubiquitin-like modifier-activating enzyme 7 isoform X1 [KO:K10698] [EC:6.2.1.45]
100080782  UBA6; ubiquitin-like modifier-activating enzyme 6 isoform X1 [KO:K10699] [EC:6.2.1.45]
100080513  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
100082207  UBE2B; ubiquitin-conjugating enzyme E2 B isoform X1 [KO:K10574] [EC:2.3.2.23]
100076318  UBE2C; ubiquitin-conjugating enzyme E2 C isoform X1 [KO:K06688] [EC:2.3.2.23]
100085795  UBE2D4; ubiquitin-conjugating enzyme E2 D4 isoform X1 [KO:K06689] [EC:2.3.2.23]
100089009  UBE2D2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
100076446  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
100085274  UBE2D3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
100077839  ubiquitin-conjugating enzyme E2 E2 isoform X1 [KO:K20217] [EC:2.3.2.23]
100078121  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
100089188  UBE2E1; ubiquitin-conjugating enzyme E2 E1 isoform X1 [KO:K20217] [EC:2.3.2.23]
100076471  UBE2F; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
100092686  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
100083857  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
100079183  UBE2H; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
100084112  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
100082953  UBE2J1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
100081225  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
100081886  UBE2K; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
114806081  UBE2L3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
100080625  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 isoform X1 [KO:K04553] [EC:2.3.2.23]
114814639  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
100079534  UBE2N; ubiquitin-conjugating enzyme E2 N isoform X1 [KO:K10580] [EC:2.3.2.23]
100076608  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme [KO:K10581] [EC:2.3.2.24]
100075523  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 [KO:K10582] [EC:2.3.2.23]
100080204  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
114807867  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
100089216  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
100075045  UBE2R2; ubiquitin-conjugating enzyme E2 R2 isoform X1 [KO:K02207] [EC:2.3.2.23]
100084095  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
100682186  UBE2U; ubiquitin-conjugating enzyme E2 U isoform X1 [KO:K10584] [EC:2.3.2.23]
100089545  UBE2W; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
100085746  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
100079899  BIRC6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
100093152  UBE3A; ubiquitin-protein ligase E3A [KO:K10587] [EC:2.3.2.26]
100089949  UBE3B; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
100074194  UBE3C; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
100079802  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
100081555  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
100089108  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
100075459  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
100077057  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
100073398  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X3 [KO:K10590] [EC:2.3.2.26]
100083335  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
100079902  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
100078721  HUWE1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
100077535  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
100091242  HERC1; probable E3 ubiquitin-protein ligase HERC1 isoform X4 [KO:K10594] [EC:2.3.2.26]
100074603  HERC2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
100076994  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
100090840  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
100078725  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
114806073  STUB1; E3 ubiquitin-protein ligase CHIP isoform X1 [KO:K09561] [EC:2.3.2.27]
100681295  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
100092103  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
100092742  UBOX5; RING finger protein 37 [KO:K10600]
100080712  MDM2; E3 ubiquitin-protein ligase Mdm2 [KO:K06643] [EC:2.3.2.27]
100091424  CBL; E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
100089052  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
103167555  CBLC; E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
114809162  PRKN; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
100682095  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
100076474  PML; protein PML [KO:K10054] [EC:2.3.2.-]
100077058  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
100076612  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
100085080  COP1; E3 ubiquitin-protein ligase COP1 [KO:K10143] [EC:2.3.2.27]
100079678  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
100077243  baculoviral IAP repeat-containing protein 2 [KO:K16060]
100079889  E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
100074804  BIRC7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
100085863  PIAS1; E3 SUMO-protein ligase PIAS1 isoform X2 [KO:K04706] [EC:2.3.2.-]
100073430  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
100091445  PIAS3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
103170679  E3 SUMO-protein ligase PIAS3-like isoform X1 [KO:K16064] [EC:2.3.2.-]
103168050  E3 SUMO-protein ligase PIAS3-like [KO:K16064] [EC:2.3.2.-]
103169992  E3 SUMO-protein ligase PIAS3-like isoform X1 [KO:K16064] [EC:2.3.2.-]
103170859  E3 SUMO-protein ligase PIAS3-like [KO:K16064] [EC:2.3.2.-]
103166189  E3 SUMO-protein ligase PIAS3-like [KO:K16064] [EC:2.3.2.-]
103171119  E3 SUMO-protein ligase PIAS3-like [KO:K16064] [EC:2.3.2.-]
103167652  E3 SUMO-protein ligase PIAS2-like [KO:K16064] [EC:2.3.2.-]
114806340  E3 SUMO-protein ligase PIAS2-like [KO:K16064] [EC:2.3.2.-]
103165947  E3 SUMO-protein ligase PIAS3-like isoform X2 [KO:K16064] [EC:2.3.2.-]
100089967  PIAS4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
114808766  E3 SUMO-protein ligase PIAS4-like isoform X1 [KO:K16065] [EC:2.3.2.27]
103166467  SYVN1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
100077108  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
100083198  AIRE; autoimmune regulator [KO:K10603]
100086500  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
103167900  BRCA1; breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
100080029  FANCL; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
100082209  MID1; E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
100077429  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
100078358  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
100076928  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
100073945  CUL1; cullin-1 [KO:K03347]
100082731  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
100076818  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
100080584  BTRC; F-box/WD repeat-containing protein 1A isoform X3 [KO:K03362]
103166602  SKP2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
100079493  FBXW7; F-box/WD repeat-containing protein 7 isoform X3 [KO:K10260]
114818238  F-box/WD repeat-containing protein 7-like [KO:K10260]
100090243  FBXO2; F-box only protein 2 [KO:K10099]
100076241  FBXO4; F-box only protein 4 [KO:K10291]
100074001  CUL2; cullin-2 isoform X1 [KO:K03870]
100086920  ELOC; elongin-C [KO:K03872]
100090222  ELOB; elongin-B [KO:K03873]
114806529  VHL; von Hippel-Lindau disease tumor suppressor isoform X1 [KO:K03871]
100081761  CUL3; cullin-3 [KO:K03869]
100089243  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
100084766  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
100077703  RHOBTB1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
100075048  RHOBTB2; rho-related BTB domain-containing protein 2 [KO:K07868]
100078785  CUL4A; cullin-4A isoform X1 [KO:K10609]
100079138  CUL4B; cullin-4B isoform X1 [KO:K10609]
100073517  DDB1; DNA damage-binding protein 1 [KO:K10610]
100088212  DDB2; DNA damage-binding protein 2 [KO:K10140]
114814291  ERCC8; DNA excision repair protein ERCC-8 isoform X2 [KO:K10570]
100087935  DET1; DET1 homolog isoform X1 [KO:K10571]
100079008  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
100077442  CUL5; cullin-5 isoform X1 [KO:K10612]
114809105  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
114816636  suppressor of cytokine signaling 1-like [KO:K04694]
100090302  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
100088630  FBXW8; F-box/WD repeat-containing protein 8 [KO:K10264]
107547580  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
100085765  ANAPC2; anaphase-promoting complex subunit 2 isoform X2 [KO:K03349]
100080753  CDC20; cell division cycle protein 20 homolog [KO:K03363]
100084567  FZR1; fizzy-related protein homolog [KO:K03364]
100073473  ANAPC1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
100092325  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
100083300  ANAPC4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
100093215  ANAPC5; anaphase-promoting complex subunit 5 [KO:K03352]
100090990  CDC16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
100073818  ANAPC7; anaphase-promoting complex subunit 7 isoform X1 [KO:K03354]
103165488  CDC23; cell division cycle protein 23 homolog [KO:K03355]
100081513  ANAPC10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
100075534  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
103166119  ANAPC13; anaphase-promoting complex subunit 13 isoform X2 [KO:K12456]
114808075  ANAPC15; anaphase-promoting complex subunit 15 [KO:K25228]
100084488  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
oaa03050  Proteasome
KO pathway
ko04120   
LinkDB

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