KEGG   PATHWAY: oga04120
Entry
oga04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Otolemur garnettii (small-eared galago)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
oga04120  Ubiquitin mediated proteolysis
oga04120

Other DBs
GO: 0016567
Organism
Otolemur garnettii (small-eared galago) [GN:oga]
Gene
100940427  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
100940843  [KO:K04552] [EC:2.3.2.23]
100941067  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
100941200  UBE2K; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
100941319  UBE2U; ubiquitin-conjugating enzyme E2 U [KO:K10584] [EC:2.3.2.23]
100941492  AIRE; autoimmune regulator [KO:K10603]
100941513  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
100941546  [KO:K04678] [EC:2.3.2.26]
100941587  TRIM37; E3 ubiquitin-protein ligase TRIM37 [KO:K10608] [EC:2.3.2.27]
100941778  ANAPC4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
100941811  SAE1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
100942022  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
100942026  CUL4A; cullin-4A isoform X1 [KO:K10609]
100942227  CBLB; E3 ubiquitin-protein ligase CBL-B [KO:K22517] [EC:2.3.2.27]
100942447  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
100942699  STUB1; E3 ubiquitin-protein ligase CHIP isoform X2 [KO:K09561] [EC:2.3.2.27]
100942708  SKP2; S-phase kinase-associated protein 2 [KO:K03875]
100942812  BTRC; F-box/WD repeat-containing protein 1A [KO:K03362]
100943045  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
100943089  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
100943149  [KO:K04506] [EC:2.3.2.27]
100943353  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
100943948  [KO:K04506] [EC:2.3.2.27]
100944017  UBE2G2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
100944131  [KO:K20217] [EC:2.3.2.23]
100944272  COP1; E3 ubiquitin-protein ligase RFWD2 isoform X1 [KO:K10143] [EC:2.3.2.27]
100944335  ANAPC15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
100944807  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
100944887  HERC2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
100944913  [KO:K02977]
100945098  ELOC; elongin-C [KO:K03872]
100945200  UBA1; ubiquitin-like modifier-activating enzyme 1 isoform X2 [KO:K03178] [EC:6.2.1.45]
100945306  [KO:K04506] [EC:2.3.2.27]
100945315  RHOBTB1; rho-related BTB domain-containing protein 1 [KO:K07868]
100945371  [KO:K04506] [EC:2.3.2.27]
100945817  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
100946447  UBE2B; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
100946515  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X2 [KO:K10604] [EC:2.3.2.27]
100946690  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
100946953  CUL5; cullin-5 [KO:K10612]
100946977  FBXW11; F-box/WD repeat-containing protein 11 isoform X2 [KO:K03362]
100946994  NEDD4; E3 ubiquitin-protein ligase NEDD4 [KO:K10591] [EC:2.3.2.26]
100947081  ANAPC1; anaphase-promoting complex subunit 1 isoform X2 [KO:K03348]
100947328  [KO:K06643] [EC:2.3.2.27]
100947344  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
100947366  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
100947661  FBXW8; F-box/WD repeat-containing protein 8 [KO:K10264]
100947716  [KO:K10580] [EC:2.3.2.23]
100947728  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
100947924  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
100948154  UBA6; ubiquitin-like modifier-activating enzyme 6 isoform X1 [KO:K10699] [EC:6.2.1.45]
100948412  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
100948747  [KO:K04552] [EC:2.3.2.23]
100949305  CDC20; cell division cycle protein 20 homolog [KO:K03363]
100949391  [KO:K04552] [EC:2.3.2.23]
100949416  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
100949715  [KO:K04506] [EC:2.3.2.27]
100950019  BIRC2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
100950079  CDC27; cell division cycle protein 27 homolog isoform X3 [KO:K03350]
100950117  FBXO4; F-box only protein 4 [KO:K10291]
100950145  SYVN1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
100950162  UBE2D1; ubiquitin-conjugating enzyme E2 D1 [KO:K06689] [EC:2.3.2.23]
100950723  ANAPC10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
100950804  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme [KO:K10581] [EC:2.3.2.24]
100951016  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
100951173  [KO:K04506] [EC:2.3.2.27]
100951387  BIRC3; baculoviral IAP repeat-containing protein 3 [KO:K16060]
100951522  XIAP; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
100951526  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
100951668  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 isoform X2 [KO:K10144] [EC:2.3.2.27]
100951719  [KO:K16060]
100951767  FZR1; fizzy-related protein homolog isoform X2 [KO:K03364]
100951899  UBE2D3; ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
100952265  VHL; von Hippel-Lindau disease tumor suppressor isoform X1 [KO:K03871]
100952414  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 [KO:K05630] [EC:2.3.2.26]
100952684  UBE2L3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
100952778  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
100952819  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like [KO:K13305] [EC:2.3.2.26]
100952916  BRCA1; breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
100953302  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
100953391  UBE2E1; ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
100953523  PPIL2; peptidyl-prolyl cis-trans isomerase-like 2 [KO:K10598] [EC:5.2.1.8]
100953739  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X4 [KO:K10590] [EC:2.3.2.26]
100953808  [KO:K06643] [EC:2.3.2.27]
100953859  CUL2; cullin-2 [KO:K03870]
100953945  HERC1; probable E3 ubiquitin-protein ligase HERC1 [KO:K10594] [EC:2.3.2.26]
100954410  UBE4B; ubiquitin conjugation factor E4 B [KO:K10597] [EC:2.3.2.27]
100954615  ELOB; elongin-B [KO:K03873]
100955068  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
100955419  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
100955448  PIAS4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
100955967  HERC3; probable E3 ubiquitin-protein ligase HERC3 [KO:K10614] [EC:2.3.2.26]
100956001  [KO:K06688] [EC:2.3.2.23]
100956078  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
100956834  ANAPC7; LOW QUALITY PROTEIN: anaphase-promoting complex subunit 7 [KO:K03354]
100957318  BIRC7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
100957479  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
100957675  MAP3K1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
100957738  CUL7; cullin-7 isoform X3 [KO:K10613]
100957756  PIAS3; E3 SUMO-protein ligase PIAS3 [KO:K16064] [EC:2.3.2.-]
100957894  KLHL9; kelch-like protein 9 [KO:K10447]
100958294  CBL; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
100958535  DDB1; DNA damage-binding protein 1 [KO:K10610]
100958766  UBA7; ubiquitin-like modifier-activating enzyme 7 [KO:K10698] [EC:6.2.1.45]
100958803  DET1; DET1 homolog isoform X2 [KO:K10571]
100958930  ANAPC5; anaphase-promoting complex subunit 5 isoform X1 [KO:K03352]
100959034  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X2 [KO:K04506] [EC:2.3.2.27]
100959039  FBXO2; F-box only protein 2 [KO:K10099]
100959096  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
100959324  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
100959380  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
100959444  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
100959697  UBE2D2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
100959716  CUL3; cullin-3 [KO:K03869]
100960160  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
100960441  UBE3C; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
100960616  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
100960712  CUL4B; cullin-4B [KO:K10609]
100960838  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
100960901  UBE3B; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
100960934  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
100960974  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
100961149  CBLC; E3 ubiquitin-protein ligase CBL-C isoform X2 [KO:K22518] [EC:2.3.2.27]
100961438  MID1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
100961605  [KO:K06643] [EC:2.3.2.27]
100961942  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
100962072  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
100962144  [KO:K04506] [EC:2.3.2.27]
100962270  CUL1; cullin-1 [KO:K03347]
100962402  DDB2; DNA damage-binding protein 2 [KO:K10140]
100962644  PIAS2; E3 SUMO-protein ligase PIAS2 [KO:K16063] [EC:2.3.2.-]
100962772  FANCL; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
100963342  CDC23; cell division cycle protein 23 homolog isoform X1 [KO:K03355]
100963359  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
100964008  PIAS1; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
100964010  PML; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
100964534  UBE2H; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
100964667  [KO:K25229]
100964707  UBE2D4; ubiquitin-conjugating enzyme E2 D4 isoform X4 [KO:K06689] [EC:2.3.2.23]
100964766  UBE2C; ubiquitin-conjugating enzyme E2 C isoform X1 [KO:K06688] [EC:2.3.2.23]
100965001  PRKN; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
100965018  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
100965641  [KO:K04552] [EC:2.3.2.23]
100965812  UBOX5; RING finger protein 37 [KO:K10600]
100965963  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
100965990  UBE2W; ubiquitin-conjugating enzyme E2 W isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
100966206  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X2 [KO:K10615] [EC:2.3.2.26]
100966290  UBE2F; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
100966406  CDC16; cell division cycle protein 16 homolog [KO:K03353]
100966419  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 [KO:K04553] [EC:2.3.2.23]
100966479  RHOBTB2; rho-related BTB domain-containing protein 2 [KO:K07868]
100966561  BIRC6; baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
100966651  HUWE1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
100966740  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
100966781  [KO:K03870]
100966878  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
105886449  [KO:K04552] [EC:2.3.2.23]
105886982  [KO:K10580] [EC:2.3.2.23]
111726789  [KO:K10580] [EC:2.3.2.23]
111727809  [KO:K06643] [EC:2.3.2.27]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
oga03050  Proteasome
KO pathway
ko04120   

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