KEGG   PATHWAY: apla04622
Entry
apla04622                   Pathway                                
Name
RIG-I-like receptor signaling pathway - Anas platyrhynchos (mallard)
Description
Specific families of pattern recognition receptors are responsible for detecting viral pathogens and generating innate immune responses. Non-self RNA appearing in a cell as a result of intracellular viral replication is recognized by a family of cytosolic RNA helicases termed RIG-I-like receptors (RLRs). The RLR proteins include RIG-I, MDA5, and LGP2 and are expressed in both immune and nonimmune cells. Upon recognition of viral nucleic acids, RLRs recruit specific intracellular adaptor proteins to initiate signaling pathways that lead to the synthesis of type I interferon and other inflammatory cytokines, which are important for eliminating viruses.
Class
Organismal Systems; Immune system
Pathway map
apla04622  RIG-I-like receptor signaling pathway
apla04622

Organism
Anas platyrhynchos (mallard) [GN:apla]
Gene
101789567  DDX58; antiviral innate immune response receptor RIG-I [KO:K12646] [EC:5.6.2.6]
101790255  IKBKB; inhibitor of nuclear factor kappa-B kinase subunit beta isoform X1 [KO:K07209] [EC:2.7.11.10]
101790490  NLRX1; NLR family member X1 [KO:K12653]
101790507  DDX3X; LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX3X [KO:K11594] [EC:5.6.2.7]
101790592  PIN1; peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 isoform X2 [KO:K09578] [EC:5.2.1.8]
101791396  NFKBIA; NF-kappa-B inhibitor alpha [KO:K04734]
101791561  TKFC; triokinase/FMN cyclase isoform X1 [KO:K00863] [EC:2.7.1.28 2.7.1.29 4.6.1.15]
101791574  TRIM25; E3 ubiquitin/ISG15 ligase TRIM25 isoform X1 [KO:K10652] [EC:2.3.2.27]
101792057  MAPK11; mitogen-activated protein kinase 11 [KO:K04441] [EC:2.7.11.24]
101792318  CYLD; ubiquitin carboxyl-terminal hydrolase CYLD isoform X1 [KO:K08601] [EC:3.4.19.12]
101792382  DHX58; LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DHX58 [KO:K12649] [EC:5.6.2.6]
101792842  ZNFX1; NFX1-type zinc finger-containing protein 1 isoform X2 [KO:K27391]
101793591  MAPK12; mitogen-activated protein kinase 12 [KO:K04441] [EC:2.7.11.24]
101793594  MAPK8; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
101793656  MAP3K1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
101793814  SIKE1; LOW QUALITY PROTEIN: suppressor of IKBKE 1 [KO:K12656]
101794527  MAVS; mitochondrial antiviral-signaling protein [KO:K12648]
101794545  RNF125; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RNF125 [KO:K12170] [EC:2.3.2.27]
101795525  ATG12; ubiquitin-like protein ATG12 [KO:K08336]
101795904  IRF7; interferon regulatory factor 7 isoform X1 [KO:K09447]
101795965  AZI2; 5-azacytidine-induced protein 2 [KO:K12651]
101796052  [KO:K05414]
101796198  ADAR; double-stranded RNA-specific adenosine deaminase isoform X1 [KO:K12968] [EC:3.5.4.37]
101796752  TRAF3; TNF receptor-associated factor 3 isoform X1 [KO:K03174]
101798094  TANK; TRAF family member-associated NF-kappa-B activator [KO:K12650]
101798467  ATG5; autophagy protein 5 isoform X2 [KO:K08339]
101798847  [KO:K05414]
101798982  TRAF2; TNF receptor-associated factor 2 isoform X2 [KO:K03173] [EC:2.3.2.27]
101799011  MAPK9; mitogen-activated protein kinase 9 isoform X5 [KO:K04440] [EC:2.7.11.24]
101799156  STING1; stimulator of interferon genes protein isoform X1 [KO:K12654]
101799731  [KO:K04400] [EC:3.4.22.63]
101799807  TRADD; LOW QUALITY PROTEIN: tumor necrosis factor receptor type 1-associated DEATH domain protein [KO:K03171]
101800076  IFIH1; interferon-induced helicase C domain-containing protein 1 [KO:K12647] [EC:5.6.2.6]
101800085  TBK1; serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]
101800153  IKBKE; LOW QUALITY PROTEIN: inhibitor of nuclear factor kappa-B kinase subunit epsilon [KO:K07211] [EC:2.7.11.10]
101800211  IL12B; LOW QUALITY PROTEIN: interleukin-12 subunit beta [KO:K05425]
101800996  MAP3K7; LOW QUALITY PROTEIN: mitogen-activated protein kinase kinase kinase 7 [KO:K04427] [EC:2.7.11.25]
101801863  FADD; FAS-associated death domain protein [KO:K02373]
101801990  RIPK1; receptor-interacting serine/threonine-protein kinase 1 [KO:K02861] [EC:2.7.11.1]
101802116  MAPK13; mitogen-activated protein kinase 13 [KO:K04441] [EC:2.7.11.24]
101802411  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
101803161  [KO:K04398] [EC:3.4.22.61]
101803431  NFKB1; nuclear factor NF-kappa-B p105 subunit [KO:K02580]
101803817  [KO:K10030]
101804010  IL8; interleukin-8 precursor [KO:K10030]
101805023  MAPK14; mitogen-activated protein kinase 14 isoform X3 [KO:K04441] [EC:2.7.11.24]
106014283  [KO:K04398] [EC:3.4.22.61]
106014314  MAPK10; mitogen-activated protein kinase 10 isoform X1 [KO:K04440] [EC:2.7.11.24]
106014932  [KO:K10030]
110354256  [KO:K08601] [EC:3.4.19.12]
113840164  [KO:K05415]
113840166  [KO:K05415]
113844483  IL12A; interleukin-12 subunit alpha [KO:K05406]
119714111  TBKBP1; TANK-binding kinase 1-binding protein 1 [KO:K12652]
119717337  CHUK; inhibitor of nuclear factor kappa-B kinase subunit alpha [KO:K04467] [EC:2.7.11.10]
Compound
C00046  RNA
Reference
  Authors
Yoneyama M, Kikuchi M, Natsukawa T, Shinobu N, Imaizumi T, Miyagishi M, Taira K, Akira S, Fujita T
  Title
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
  Journal
Nat Immunol 5:730-7 (2004)
DOI:10.1038/ni1087
Reference
  Authors
Takeuchi O, Akira S
  Title
MDA5/RIG-I and virus recognition.
  Journal
Curr Opin Immunol 20:17-22 (2008)
DOI:10.1016/j.coi.2008.01.002
Reference
  Authors
Yoneyama M, Fujita T
  Title
RNA recognition and signal transduction by RIG-I-like receptors.
  Journal
Immunol Rev 227:54-65 (2009)
DOI:10.1111/j.1600-065X.2008.00727.x
Reference
  Authors
Nakhaei P, Genin P, Civas A, Hiscott J
  Title
RIG-I-like receptors: sensing and responding to RNA virus infection.
  Journal
Semin Immunol 21:215-22 (2009)
DOI:10.1016/j.smim.2009.05.001
Reference
  Authors
Moore CB, Ting JP
  Title
Regulation of mitochondrial antiviral signaling pathways.
  Journal
Immunity 28:735-9 (2008)
DOI:10.1016/j.immuni.2008.05.005
Reference
  Authors
Barral PM, Sarkar D, Su ZZ, Barber GN, DeSalle R, Racaniello VR, Fisher PB
  Title
Functions of the cytoplasmic RNA sensors RIG-I and MDA-5: key regulators of innate immunity.
  Journal
Pharmacol Ther 124:219-34 (2009)
DOI:10.1016/j.pharmthera.2009.06.012
Reference
  Authors
Schlee M, Hartmann E, Coch C, Wimmenauer V, Janke M, Barchet W, Hartmann G
  Title
Approaching the RNA ligand for RIG-I?
  Journal
Immunol Rev 227:66-74 (2009)
DOI:10.1111/j.1600-065X.2008.00724.x
Reference
  Authors
Saito T, Gale M Jr
  Title
Differential recognition of double-stranded RNA by RIG-I-like receptors in antiviral immunity.
  Journal
J Exp Med 205:1523-7 (2008)
DOI:10.1084/jem.20081210
Reference
  Authors
Kawai T, Akira S
  Title
Toll-like receptor and RIG-I-like receptor signaling.
  Journal
Ann N Y Acad Sci 1143:1-20 (2008)
DOI:10.1196/annals.1443.020
Reference
  Authors
Michallet MC, Meylan E, Ermolaeva MA, Vazquez J, Rebsamen M, Curran J, Poeck H, Bscheider M, Hartmann G, Konig M, Kalinke U, Pasparakis M, Tschopp J
  Title
TRADD protein is an essential component of the RIG-like helicase antiviral pathway.
  Journal
Immunity 28:651-61 (2008)
DOI:10.1016/j.immuni.2008.03.013
Reference
  Authors
Yoshida R, Takaesu G, Yoshida H, Okamoto F, Yoshioka T, Choi Y, Akira S, Kawai T, Yoshimura A, Kobayashi T
  Title
TRAF6 and MEKK1 play a pivotal role in the RIG-I-like helicase antiviral pathway.
  Journal
J Biol Chem 283:36211-20 (2008)
DOI:10.1074/jbc.M806576200
Reference
  Authors
Mikkelsen SS, Jensen SB, Chiliveru S, Melchjorsen J, Julkunen I, Gaestel M, Arthur JS, Flavell RA, Ghosh S, Paludan SR
  Title
RIG-I-mediated activation of p38 MAPK is essential for viral induction of interferon and activation of dendritic cells: dependence on TRAF2 and TAK1.
  Journal
J Biol Chem 284:10774-82 (2009)
DOI:10.1074/jbc.M807272200
Reference
  Authors
Liu G, Gack MU
  Title
Distinct and Orchestrated Functions of RNA Sensors in Innate Immunity.
  Journal
Immunity 53:26-42 (2020)
DOI:10.1016/j.immuni.2020.03.017
Related
pathway
apla04010  MAPK signaling pathway
apla04120  Ubiquitin mediated proteolysis
apla04210  Apoptosis
KO pathway
ko04622   

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