KEGG   PATHWAY: bdi03430
Entry
bdi03430                    Pathway                                
Name
Mismatch repair - Brachypodium distachyon (stiff brome)
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
bdi03430  Mismatch repair
bdi03430

Other DBs
GO: 0006298
Organism
Brachypodium distachyon (stiff brome) [GN:bdi]
Gene
100843920  LOW QUALITY PROTEIN: uncharacterized protein LOC100843920 [KO:K07456]
100825922  single-stranded DNA-binding protein, mitochondrial [KO:K03111]
100824722  DNA mismatch repair protein PMS1 isoform X1 [KO:K10858]
100845473  DNA mismatch repair protein MLH1 isoform X2 [KO:K08734]
100837570  DNA mismatch repair protein MSH7 [KO:K08737]
100821236  DNA mismatch repair protein MSH6 [KO:K08737]
100842311  DNA mismatch repair protein MSH2 [KO:K08735]
100824247  DNA mismatch repair protein MSH3 isoform X2 [KO:K08736]
100827102  DNA mismatch repair protein MLH3 [KO:K08739]
100841258  replication factor C subunit 1 [KO:K10754]
100825772  replication factor C subunit 2 [KO:K10755]
100829254  replication factor C subunit 4 [KO:K10755]
100821930  replication factor C subunit 3 [KO:K10756]
100837911  replication factor C subunit 5 [KO:K10756]
100835863  replication factor C subunit 3 [KO:K10756]
100843467  proliferating cell nuclear antigen [KO:K04802]
100838825  proliferating cell nuclear antigen isoform X2 [KO:K04802]
100837914  proliferating cell nuclear antigen isoform X1 [KO:K04802]
100842034  exonuclease 1 [KO:K10746] [EC:3.1.-.-]
100822831  exonuclease 1 [KO:K10746] [EC:3.1.-.-]
100835357  LOW QUALITY PROTEIN: replication protein A 70 kDa DNA-binding subunit A-like [KO:K07466]
100846917  replication protein A 70 kDa DNA-binding subunit C isoform X1 [KO:K07466]
100846308  replication protein A 70 kDa DNA-binding subunit A [KO:K07466]
100845662  replication protein A 70 kDa DNA-binding subunit B [KO:K07466]
104583264  replication protein A 70 kDa DNA-binding subunit C [KO:K07466]
100828397  replication protein A 32 kDa subunit A [KO:K10739]
100821528  replication protein A 32 kDa subunit B [KO:K10739]
100837028  replication protein A 32 kDa subunit C isoform X1 [KO:K10739]
112269359  replication protein A 32 kDa subunit B-like isoform X1 [KO:K10739]
100836018  replication protein A 14 kDa subunit [KO:K10740]
100829480  replication protein A 14 kDa subunit [KO:K10740]
100827521  DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
100831775  DNA polymerase delta small subunit [KO:K02328]
100831421  protein IWS1 homolog A [KO:K03504]
100827592  DNA polymerase delta subunit 4 [KO:K03505]
100836085  uncharacterized protein LOC100836085 [KO:K03505]
100843366  DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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