KEGG   PATHWAY: cbrc04120
Entry
cbrc04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Corvus brachyrhynchos (American crow)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
cbrc04120  Ubiquitin mediated proteolysis
cbrc04120

Other DBs
GO: 0016567
Organism
Corvus brachyrhynchos (American crow) [GN:cbrc]
Gene
103613347  UBB; polyubiquitin-B isoform X2 [KO:K04551]
103615904  UBC; polyubiquitin-C [KO:K08770]
103623031  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
103614349  UBA7; ubiquitin-like modifier-activating enzyme 7 [KO:K03178] [EC:6.2.1.45]
103618318  SAE1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
103617258  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
103624361  UBA3; NEDD8-activating enzyme E1 catalytic subunit [KO:K10686] [EC:6.2.1.64]
103617344  UBA6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
103621634  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
103614680  UBE2B; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
103617390  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
103617315  UBE2D3; ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
103615254  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X4 [KO:K06689] [EC:2.3.2.23]
103624886  UBE2D2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
103616534  UBE2E3; ubiquitin-conjugating enzyme E2 E3 isoform X1 [KO:K20217] [EC:2.3.2.23]
103614117  ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
103614118  LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
103624337  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
103621624  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
103611951  UBE2G2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
103611343  UBE2H; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
103615484  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
103621445  UBE2J1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
103622304  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
103622524  UBE2K; ubiquitin-conjugating enzyme E2 K [KO:K04649] [EC:2.3.2.23]
103615987  UBE2L3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
103618298  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
103621764  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme [KO:K10581] [EC:2.3.2.24]
103611319  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
103622965  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 isoform X2 [KO:K10582] [EC:2.3.2.23]
103617803  ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
103622129  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
103623869  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
103624252  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
103613567  UBE2W; ubiquitin-conjugating enzyme E2 W isoform X3 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
103619896  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
103624137  BIRC6; baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
103617502  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
103615949  UBE3B; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
103612076  UBE3C; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
103615572  SMURF1; E3 ubiquitin-protein ligase SMURF1 [KO:K04678] [EC:2.3.2.26]
103619088  SMURF2; E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
103619005  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
103613438  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X3 [KO:K05633] [EC:2.3.2.26]
103620598  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 [KO:K05630] [EC:2.3.2.26]
103624834  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X4 [KO:K10590] [EC:2.3.2.26]
103618752  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
103619507  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X7 [KO:K13305] [EC:2.3.2.26]
103612952  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
103618337  HERC1; LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC1 [KO:K10594] [EC:2.3.2.26]
103611779  E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
103622373  probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
103623631  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
103618626  UBE4A; LOW QUALITY PROTEIN: ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
103622280  UBE4B; ubiquitin conjugation factor E4 B [KO:K10597] [EC:2.3.2.27]
103620463  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
103615981  PPIL2; peptidyl-prolyl cis-trans isomerase-like 2 [KO:K10598] [EC:5.2.1.8]
103611851  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
103621118  UBOX5; RING finger protein 37 [KO:K10600]
103614817  E3 ubiquitin-protein ligase Mdm2 isoform X3 [KO:K06643] [EC:2.3.2.27]
103618587  CBL; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
103613861  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
103624193  PARK2; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
103620199  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
103620910  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
103623840  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
103617783  RFWD2; E3 ubiquitin-protein ligase RFWD2 isoform X1 [KO:K10143] [EC:2.3.2.27]
103618947  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
103617954  inhibitor of apoptosis protein [KO:K16060]
103621646  XIAP; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
103616482  BIRC7; baculoviral IAP repeat-containing protein 7 isoform X1 [KO:K16061]
103618956  PIAS1; E3 SUMO-protein ligase PIAS1 isoform X2 [KO:K04706] [EC:2.3.2.-]
103622034  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X5 [KO:K16063] [EC:2.3.2.-]
103621171  PIAS4; LOW QUALITY PROTEIN: E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
103613190  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
103620487  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
103623027  FANCL; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
103617579  MID1; E3 ubiquitin-protein ligase Midline-1 [KO:K08285] [EC:2.3.2.27]
103619760  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
103613336  TRIM37; E3 ubiquitin-protein ligase TRIM37 [KO:K10608] [EC:2.3.2.27]
103618243  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
103615760  CUL1; cullin-1 isoform X2 [KO:K03347]
103614681  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
103618361  FBXW11; F-box/WD repeat-containing protein 11 isoform X2 [KO:K03362]
103624550  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
103612925  SKP2; S-phase kinase-associated protein 2 [KO:K03875]
103617422  FBXW7; F-box/WD repeat-containing protein 7 [KO:K10260]
103624046  F-box/WD repeat-containing protein 7 isoform X4 [KO:K10260]
103616114  FBXO2; F-box only protein 2 [KO:K10099]
103612939  FBXO4; F-box only protein 4 [KO:K10291]
103620634  CUL2; cullin-2 isoform X2 [KO:K03870]
103613565  TCEB1; transcription elongation factor B polypeptide 1 [KO:K03872]
103619635  CUL3; cullin-3 [KO:K03869]
103617262  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
103623644  RHOBTB1; rho-related BTB domain-containing protein 1 [KO:K07868]
103614965  RHOBTB2; rho-related BTB domain-containing protein 2 [KO:K07868]
103617557  CUL4A; cullin-4A [KO:K10609]
103621642  CUL4B; cullin-4B [KO:K10609]
103611845  DDB1; DNA damage-binding protein 1 [KO:K10610]
103620739  DDB2; DNA damage-binding protein 2 isoform X2 [KO:K10140]
103623742  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
103621305  DET1; DET1 homolog isoform X1 [KO:K10571]
103624867  RNF7; RING-box protein 2 [KO:K10611]
103612475  CUL5; cullin-5 isoform X1 [KO:K10612]
103615352  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
103613212  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
103623793  FBXW8; LOW QUALITY PROTEIN: F-box/WD repeat-containing protein 8 [KO:K10264]
103619781  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
103621992  CDC20; cell division cycle protein 20 homolog [KO:K03363]
103620517  FZR1; fizzy-related protein homolog [KO:K03364]
103613038  ANAPC1; anaphase-promoting complex subunit 1 [KO:K03348]
103619914  CDC27; cell division cycle protein 27 homolog [KO:K03350]
103625577  ANAPC4; anaphase-promoting complex subunit 4 [KO:K03351]
103615923  ANAPC5; anaphase-promoting complex subunit 5 [KO:K03352]
103617612  CDC16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
103616024  ANAPC7; anaphase-promoting complex subunit 7 [KO:K03354]
103611594  CDC23; LOW QUALITY PROTEIN: cell division cycle protein 23 homolog [KO:K03355]
103622356  ANAPC10; anaphase-promoting complex subunit 10 [KO:K03357]
103612384  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
103613975  ANAPC15; anaphase-promoting complex subunit 15 [KO:K25228]
103617212  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
cbrc03050  Proteasome
KO pathway
ko04120   
LinkDB

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