KEGG   PATHWAY: ecad00900
Entry
ecad00900                   Pathway                                
Name
Terpenoid backbone biosynthesis - Erigeron canadensis (horseweed)
Description
Terpenoids, also known as isoprenoids, are a large class of natural products consisting of isoprene (C5) units. There are two biosynthetic pathways, the mevalonate pathway [MD:M00095] and the non-mevalonate pathway or the MEP/DOXP pathway [MD:M00096], for the terpenoid building blocks: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). The action of prenyltransferases then generates higher-order building blocks: geranyl diphosphate (GPP), farsenyl diphosphate (FPP), and geranylgeranyl diphosphate (GGPP), which are the precursors of monoterpenoids (C10), sesquiterpenoids (C15), and diterpenoids (C20), respectively. Condensation of these building blocks gives rise to the precursors of sterols (C30) and carotenoids (C40). The MEP/DOXP pathway is absent in higher animals and fungi, but in green plants the MEP/DOXP and mevalonate pathways co-exist in separate cellular compartments. The MEP/DOXP pathway, operating in the plastids, is responsible for the formation of essential oil monoterpenes and linalyl acetate, some sesquiterpenes, diterpenes, and carotenoids and phytol. The mevalonate pathway, operating in the cytosol, gives rise to triterpenes, sterols, and most sesquiterpenes.
Class
Metabolism; Metabolism of terpenoids and polyketides
Pathway map
ecad00900  Terpenoid backbone biosynthesis
ecad00900

Module
ecad_M00095  C5 isoprenoid biosynthesis, mevalonate pathway [PATH:ecad00900]
ecad_M00096  C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:ecad00900]
ecad_M00366  C10-C20 isoprenoid biosynthesis, plants [PATH:ecad00900]
Other DBs
GO: 0009240 0016091
Organism
Erigeron canadensis (horseweed) [GN:ecad]
Gene
122579189  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
122579996  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic isoform X1 [KO:K01662] [EC:2.2.1.7]
122599067  probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic [KO:K01662] [EC:2.2.1.7]
122599193  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
122599194  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
122599259  probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [KO:K01662] [EC:2.2.1.7]
122586624  1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic [KO:K00099] [EC:1.1.1.267]
122579292  2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic [KO:K00991] [EC:2.7.7.60]
122603074  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic [KO:K00919] [EC:2.7.1.148]
122600777  2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [KO:K01770] [EC:4.6.1.12]
122602600  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [KO:K03526] [EC:1.17.7.1 1.17.7.3]
122591323  4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like [KO:K03527] [EC:1.17.7.4]
122600758  4-hydroxy-3-methylbut-2-enyl diphosphate reductase, chloroplastic-like [KO:K03527] [EC:1.17.7.4]
122590516  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
122595106  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
122584190  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
122580526  hydroxymethylglutaryl-CoA synthase-like [KO:K01641] [EC:2.3.3.10]
122609880  hydroxymethylglutaryl-CoA synthase [KO:K01641] [EC:2.3.3.10]
122602162  3-hydroxy-3-methylglutaryl coenzyme A reductase 1-like [KO:K00021] [EC:1.1.1.34]
122580131  3-hydroxy-3-methylglutaryl coenzyme A reductase 2-B-like [KO:K00021] [EC:1.1.1.34]
122606915  3-hydroxy-3-methylglutaryl coenzyme A reductase 1-like [KO:K00021] [EC:1.1.1.34]
122596882  3-hydroxy-3-methylglutaryl-coenzyme A reductase 3-like [KO:K00021] [EC:1.1.1.34]
122586774  3-hydroxy-3-methylglutaryl coenzyme A reductase 1-like [KO:K00021] [EC:1.1.1.34]
122595509  mevalonate kinase [KO:K00869] [EC:2.7.1.36]
122578688  phosphomevalonate kinase, peroxisomal-like [KO:K00938] [EC:2.7.4.2]
122599403  phosphomevalonate kinase, peroxisomal [KO:K00938] [EC:2.7.4.2]
122602843  diphosphomevalonate decarboxylase 2 [KO:K01597] [EC:4.1.1.33]
122606880  isopentenyl phosphate kinase [KO:K06981] [EC:2.7.4.26]
122605163  isopentenyl-diphosphate Delta-isomerase II [KO:K01823] [EC:5.3.3.2]
122586679  isopentenyl-diphosphate Delta-isomerase I-like [KO:K01823] [EC:5.3.3.2]
122590822  farnesyl diphosphate synthase 2-like isoform X1 [KO:K00787] [EC:2.5.1.1 2.5.1.10]
122591079  farnesyl pyrophosphate synthase-like [KO:K00787] [EC:2.5.1.1 2.5.1.10]
122579947  farnesyl pyrophosphate synthase [KO:K00787] [EC:2.5.1.1 2.5.1.10]
122606541  farnesyl diphosphate synthase 2-like [KO:K00787] [EC:2.5.1.1 2.5.1.10]
122606571  farnesyl pyrophosphate synthase-like isoform X1 [KO:K00787] [EC:2.5.1.1 2.5.1.10]
122600287  solanesyl diphosphate synthase 3, chloroplastic/mitochondrial isoform X1 [KO:K14066] [EC:2.5.1.1]
122578446  geranylgeranyl pyrophosphate synthase, chloroplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
122580343  geranylgeranyl pyrophosphate synthase 7, chloroplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
122594322  heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
122596295  heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
122609829  geranylgeranyl pyrophosphate synthase, chloroplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
122600060  geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic-like [KO:K13789] [EC:2.5.1.1 2.5.1.10 2.5.1.29]
122596409  solanesyl diphosphate synthase 1, chloroplastic-like [KO:K05356] [EC:2.5.1.84 2.5.1.85]
122603141  dehydrodolichyl diphosphate synthase CPT3-like [KO:K11778] [EC:2.5.1.87]
122603881  dehydrodolichyl diphosphate synthase 6-like [KO:K11778] [EC:2.5.1.87]
122606699  (2Z,6Z)-farnesyl diphosphate synthase CPT6, chloroplastic-like [KO:K11778] [EC:2.5.1.87]
122607049  dehydrodolichyl diphosphate synthase CPT3-like [KO:K11778] [EC:2.5.1.87]
122596362  dehydrodolichyl diphosphate synthase complex subunit nus1 [KO:K11778] [EC:2.5.1.87]
122609258  (2Z,6Z)-farnesyl diphosphate synthase CPT6, chloroplastic-like [KO:K11778] [EC:2.5.1.87]
122597893  dehydrodolichyl diphosphate synthase CPT3-like [KO:K11778] [EC:2.5.1.87]
122600673  dehydrodolichyl diphosphate synthase complex subunit nus1-like [KO:K11778] [EC:2.5.1.87]
122589605  geranylgeranyl diphosphate reductase-like [KO:K10960] [EC:1.3.1.83 1.3.1.111]
122609866  geranylgeranyl diphosphate reductase, chloroplastic [KO:K10960] [EC:1.3.1.83 1.3.1.111]
122595421  (E)-beta-ocimene synthase, chloroplastic-like [KO:K12742] [EC:4.2.3.27]
122586432  (E)-beta-ocimene synthase, chloroplastic-like [KO:K12742] [EC:4.2.3.27]
122587667  (E)-beta-ocimene synthase, chloroplastic-like [KO:K12742] [EC:4.2.3.27]
122600593  (E)-beta-ocimene synthase, chloroplastic-like [KO:K12742] [EC:4.2.3.27]
122609598  protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [KO:K05955] [EC:2.5.1.58 2.5.1.59]
122605473  protein farnesyltransferase subunit beta-like isoform X1 [KO:K05954] [EC:2.5.1.58]
122581758  CAAX prenyl protease 2 [KO:K08658] [EC:3.4.26.1]
122596051  CAAX prenyl protease 1 homolog [KO:K06013] [EC:3.4.24.84]
122607575  protein-S-isoprenylcysteine O-methyltransferase B-like [KO:K00587] [EC:2.1.1.100]
122578046  probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL2 isoform X1 [KO:K15889] [EC:3.1.1.-]
122586024  isoprenylcysteine alpha-carbonyl methylesterase ICME-like [KO:K15889] [EC:3.1.1.-]
122581291  farnesylcysteine lyase [KO:K05906] [EC:1.8.3.5 1.8.3.6]
122607565  3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase [KO:K15891] [EC:1.1.1.354]
122592675  probable phytol kinase 3, chloroplastic [KO:K15892] [EC:2.7.1.216]
122592836  probable phytol kinase 3, chloroplastic [KO:K15892] [EC:2.7.1.216]
122608516  probable phytol kinase 2, chloroplastic isoform X1 [KO:K15892] [EC:2.7.1.216]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00118  D-Glyceraldehyde 3-phosphate
C00129  Isopentenyl diphosphate
C00235  Dimethylallyl diphosphate
C00332  Acetoacetyl-CoA
C00341  Geranyl diphosphate
C00353  Geranylgeranyl diphosphate
C00356  (S)-3-Hydroxy-3-methylglutaryl-CoA
C00418  (R)-Mevalonate
C00448  trans,trans-Farnesyl diphosphate
C01107  (R)-5-Phosphomevalonate
C01126  (2E,6E)-Farnesol
C01143  (R)-5-Diphosphomevalonate
C01230  all-trans-Hexaprenyl diphosphate
C02321  cis-1,4-Polyisoprene
C03461  2-trans,6-trans-Farnesal
C04145  all-trans-Nonaprenyl diphosphate
C04146  all-trans-Octaprenyl diphosphate
C04216  all-trans-Heptaprenyl diphosphate
C04506  Protein C-terminal S-farnesyl-L-cysteine
C04574  di-trans,poly-cis-Undecaprenyl diphosphate
C04748  Protein C-terminal S-farnesyl-L-cysteine methyl ester
C05427  Phytyl diphosphate
C05859  ditrans,polycis-Polyprenyl diphosphate
C06081  Polyprenol
C11434  2-C-Methyl-D-erythritol 4-phosphate
C11435  4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11436  2-Phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
C11437  1-Deoxy-D-xylulose 5-phosphate
C11453  2-C-Methyl-D-erythritol 2,4-cyclodiphosphate
C11811  1-Hydroxy-2-methyl-2-butenyl 4-diphosphate
C16521  Isoprene
C16826  2-cis,6-trans-Farnesyl diphosphate
C17432  all-trans-Decaprenyl diphosphate
C18321  trans,octacis-Decaprenyl diphosphate
C19691  Farnesylcysteine
C19760  2-cis,6-cis-Farnesyl diphosphate
C19852  tritrans,heptacis-Undecaprenyl diphosphate
C19853  trans,polycis-Polyprenyl diphosphate
C20120  S-Farnesyl protein
C20121  trans,trans-Farnesyl phosphate
C20345  Isopentenyl phosphate
C20847  (R)-Mevalonate 3-phosphate
C20848  (R)-Mevalonate 3,5-bisphosphate
C22453  trans-Anhydromevalonate 5-phosphate
Reference
  Authors
Lange BM, Ghassemian M.
  Title
Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism.
  Journal
Plant Mol Biol 51:925-48 (2003)
DOI:10.1023/A:1023005504702
Reference
  Authors
Saiki R, Nagata A, Kainou T, Matsuda H, Kawamukai M
  Title
Characterization of solanesyl and decaprenyl diphosphate synthases in mice and humans.
  Journal
FEBS J 272:5606-22 (2005)
DOI:10.1111/j.1742-4658.2005.04956.x
Reference
PMID:9858571
  Authors
Sato M, Sato K, Nishikawa S, Hirata A, Kato J, Nakano A
  Title
The yeast RER2 gene, identified by endoplasmic reticulum protein localization mutations, encodes cis-prenyltransferase, a key enzyme in dolichol synthesis.
  Journal
Mol Cell Biol 19:471-83 (1999)
DOI:10.1128/MCB.19.1.471
Reference
  Authors
Vannice JC, Skaff DA, Keightley A, Addo JK, Wyckoff GJ, Miziorko HM
  Title
Identification in Haloferax volcanii of phosphomevalonate decarboxylase and isopentenyl phosphate kinase as catalysts of the terminal enzyme reactions in an  archaeal alternate mevalonate pathway.
  Journal
J Bacteriol 196:1055-63 (2014)
DOI:10.1128/JB.01230-13
Related
pathway
ecad00010  Glycolysis / Gluconeogenesis
ecad00100  Steroid biosynthesis
ecad00130  Ubiquinone and other terpenoid-quinone biosynthesis
ecad00270  Cysteine and methionine metabolism
ecad00510  N-Glycan biosynthesis
ecad00902  Monoterpenoid biosynthesis
ecad00904  Diterpenoid biosynthesis
ecad00906  Carotenoid biosynthesis
ecad00908  Zeatin biosynthesis
ecad00909  Sesquiterpenoid and triterpenoid biosynthesis
KO pathway
ko00900   
LinkDB

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