KEGG   PATHWAY: npo04120
Entry
npo04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Nyctereutes procyonoides (raccoon dog)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
npo04120  Ubiquitin mediated proteolysis
npo04120

Other DBs
GO: 0016567
Organism
Nyctereutes procyonoides (raccoon dog) [GN:npo]
Gene
129497617  UBB; polyubiquitin-B [KO:K08770]
129508717  ubiquitin-60S ribosomal protein L40-like [KO:K02927]
129521762  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
129508005  ubiquitin-40S ribosomal protein S27a [KO:K02977]
129518532  ubiquitin-40S ribosomal protein S27a-like [KO:K02977]
129511787  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
129520671  ubiquitin-40S ribosomal protein S27a-like [KO:K02977]
129517789  UBA1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
129500614  SAE1; SUMO-activating enzyme subunit 1 isoform X1 [KO:K10684] [EC:6.2.1.45]
129500263  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
129521401  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
129522373  UBA7; ubiquitin-like modifier-activating enzyme 7 isoform X1 [KO:K10698] [EC:6.2.1.45]
129521163  UBA6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
129517680  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
129494880  UBE2B; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
129499053  ubiquitin-conjugating enzyme E2 B-like [KO:K10574] [EC:2.3.2.23]
129495168  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
129504605  ubiquitin-conjugating enzyme E2 D3-like [KO:K06689] [EC:2.3.2.23]
129499178  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
129513574  UBE2D2; ubiquitin-conjugating enzyme E2 D2 isoform X1 [KO:K06689] [EC:2.3.2.23]
129521126  UBE2D3; ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
129498953  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
129507021  UBE2E2; ubiquitin-conjugating enzyme E2 E2 isoform X1 [KO:K20217] [EC:2.3.2.23]
129507043  UBE2E1; ubiquitin-conjugating enzyme E2 E1 isoform X1 [KO:K20217] [EC:2.3.2.23]
129516594  ubiquitin-conjugating enzyme E2 E2-like [KO:K20217] [EC:2.3.2.23]
129493719  UBE2F; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
129496795  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
129501993  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
129498185  UBE2H; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
129507549  SUMO-conjugating enzyme UBC9-B-like [KO:K10577]
129519657  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
129512894  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
129497425  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
129510406  UBE2K; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
129507957  UBE2L3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
129509257  ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
129502499  ubiquitin-conjugating enzyme E2 L3-like [KO:K04552] [EC:2.3.2.23]
129494405  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 isoform X1 [KO:K04553] [EC:2.3.2.23]
129500835  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
129503782  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
129496870  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
129498144  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
129506661  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
129506797  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
129507055  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
129507115  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
129522730  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
129517002  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
129510113  ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
129512700  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
129520856  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
129517590  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X1 [KO:K10581] [EC:2.3.2.24]
129509063  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
129498371  UBE2QL1; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
129506253  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 [KO:K10582] [EC:2.3.2.23]
129495096  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
129521790  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
129496222  ubiquitin-conjugating enzyme E2 R2-like [KO:K02207] [EC:2.3.2.23]
129500396  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
129496578  UBE2U; ubiquitin-conjugating enzyme E2 U [KO:K10584] [EC:2.3.2.23]
129505290  UBE2W; ubiquitin-conjugating enzyme E2 W isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
129507233  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
129510798  BIRC6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
129510154  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
129507658  UBE3B; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
129515922  UBE3C; ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
129511669  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
129519573  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
129494282  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
129495696  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
129497021  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
129493822  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
129506290  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
129495404  E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
129514443  E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
129517585  HUWE1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
129495660  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
129506486  HERC1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
129510629  HERC2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
129501880  HERC3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
129509438  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
129496994  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
129496827  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
129519389  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
129507659  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 isoform X1 [KO:K10598] [EC:5.2.1.8]
129503171  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
129495875  UBOX5; RING finger protein 37 isoform X1 [KO:K10600]
129511628  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
129497161  CBL; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
129503860  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
129500744  CBLC; E3 ubiquitin-protein ligase CBL-C isoform X1 [KO:K22518] [EC:2.3.2.27]
129501049  PRKN; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
129513392  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
129506200  PML; LOW QUALITY PROTEIN: protein PML [KO:K10054] [EC:2.3.2.-]
129494142  TRAF6; TNF receptor-associated factor 6 isoform X1 [KO:K03175] [EC:2.3.2.27]
129513743  MAP3K1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
129505891  COP1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
129501887  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
129497162  BIRC2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
129497816  baculoviral IAP repeat-containing protein 3 [KO:K16060]
129517703  XIAP; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
129496284  BIRC7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
129506412  PIAS1; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
129509066  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
129501464  PIAS3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
129521862  PIAS4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
129501860  SYVN1; E3 ubiquitin-protein ligase synoviolin isoform X1 [KO:K10601] [EC:2.3.2.27]
129508051  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
129502070  AIRE; autoimmune regulator [KO:K10603]
129519323  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
129508022  BRCA1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
129511467  FANCL; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
129518522  MID1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
129494716  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
129504562  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
129511746  RBX1; E3 ubiquitin-protein ligase RBX1 isoform X1 [KO:K03868] [EC:2.3.2.32]
129515703  CUL1; cullin-1 [KO:K03347]
129501328  S-phase kinase-associated protein 1-like [KO:K03094]
129494987  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
129493733  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
129509575  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
129509822  SKP2; S-phase kinase-associated protein 2 [KO:K03875]
129516858  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
129513378  FBXO2; F-box only protein 2 [KO:K10099]
129509523  FBXO4; F-box only protein 4 isoform X1 [KO:K10291]
129499035  CUL2; cullin-2 [KO:K03870]
129505368  ELOC; elongin-C [KO:K03872]
129500523  elongin-C-like [KO:K03872]
129519177  ELOB; elongin-B [KO:K03873]
129522556  VHL; von Hippel-Lindau disease tumor suppressor [KO:K03871]
129523389  CUL3; cullin-3 isoform X1 [KO:K03869]
129508832  kelch-like ECH-associated protein 1 [KO:K10456]
129521540  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
129495262  KLHL9; kelch-like protein 9 [KO:K10447]
129517504  KLHL13; kelch-like protein 13 isoform X1 [KO:K10447]
129523452  RHOBTB2; rho-related BTB domain-containing protein 2 isoform X2 [KO:K07868]
129499184  RHOBTB1; rho-related BTB domain-containing protein 1 [KO:K07868]
129516416  CUL4A; cullin-4A [KO:K10609]
129518270  CUL4B; cullin-4B isoform X1 [KO:K10609]
129501514  DDB1; DNA damage-binding protein 1 [KO:K10610]
129499055  DDB2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
129513789  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
129510529  DET1; DET1 homolog isoform X1 [KO:K10571]
129507307  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
129497146  CUL5; LOW QUALITY PROTEIN: cullin-5 [KO:K10612]
129519759  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
129497119  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
129512896  CUL7; cullin-7 isoform X1 [KO:K10613]
129508067  FBXW8; F-box/WD repeat-containing protein 8 [KO:K10264]
129515808  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
129505692  ANAPC2; anaphase-promoting complex subunit 2 [KO:K03349]
129520864  CDC20; cell division cycle protein 20 homolog [KO:K03363]
129521447  FZR1; fizzy-related protein homolog isoform X1 [KO:K03364]
129511032  ANAPC1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
129511923  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
129510588  ANAPC4; LOW QUALITY PROTEIN: anaphase-promoting complex subunit 4 [KO:K03351]
129507972  ANAPC5; anaphase-promoting complex subunit 5 isoform X1 [KO:K03352]
129516407  CDC16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
129508025  ANAPC7; anaphase-promoting complex subunit 7 isoform X1 [KO:K03354]
129494691  CDC23; cell division cycle protein 23 homolog [KO:K03355]
129517000  ANAPC10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
129494844  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
129498931  anaphase-promoting complex subunit 13-like [KO:K12456]
129507013  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
129506683  ANAPC15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
129509447  ANAPC16; anaphase-promoting complex subunit 16 isoform X1 [KO:K25229]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
npo03050  Proteasome
KO pathway
ko04120   
LinkDB

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