KEGG   PATHWAY: ogo03430
Entry
ogo03430                    Pathway                                
Name
Mismatch repair - Oncorhynchus gorbuscha (pink salmon)
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
ogo03430  Mismatch repair
ogo03430

Other DBs
GO: 0006298
Organism
Oncorhynchus gorbuscha (pink salmon) [GN:ogo]
Gene
123995620  single-stranded DNA-binding protein, mitochondrial-like isoform X1 [KO:K03111]
124013788  single-stranded DNA-binding protein, mitochondrial-like [KO:K03111]
124040197  LOW QUALITY PROTEIN: mismatch repair endonuclease PMS2-like [KO:K10858]
124041456  mlh1; DNA mismatch repair protein Mlh1 [KO:K08734]
124040307  msh6; DNA mismatch repair protein Msh6 [KO:K08737]
124040051  msh2; DNA mismatch repair protein Msh2 [KO:K08735]
124034012  msh3; DNA mismatch repair protein Msh3 isoform X1 [KO:K08736]
124046463  mlh3; DNA mismatch repair protein Mlh3 isoform X1 [KO:K08739]
124024854  rfc1; replication factor C subunit 1 isoform X1 [KO:K10754]
124027425  LOW QUALITY PROTEIN: replication factor C subunit 1-like [KO:K10754]
123996933  replication factor C subunit 4-like isoform X1 [KO:K10755]
124011721  rfc2; replication factor C subunit 2 isoform X1 [KO:K10755]
124037786  replication factor C subunit 4-like [KO:K10755]
123995226  rfc3; LOW QUALITY PROTEIN: replication factor C subunit 3 [KO:K10756]
124036588  replication factor C subunit 5-like [KO:K10756]
124034195  proliferating cell nuclear antigen [KO:K04802]
124036453  proliferating cell nuclear antigen-like [KO:K04802]
124041293  exo1; exonuclease 1 [KO:K10746] [EC:3.1.-.-]
124005678  replication protein A 70 kDa DNA-binding subunit-like isoform X1 [KO:K07466]
123992728  replication protein A 70 kDa DNA-binding subunit-like isoform X1 [KO:K07466]
123997576  replication protein A 32 kDa subunit-like [KO:K10739]
124004844  rpa2; replication protein A 32 kDa subunit [KO:K10739]
124012654  replication protein A 14 kDa subunit-like [KO:K10740]
124043343  replication protein A 14 kDa subunit-like [KO:K10740]
124026226  DNA polymerase delta catalytic subunit-like [KO:K02327] [EC:2.7.7.7]
124028086  LOW QUALITY PROTEIN: DNA polymerase delta catalytic subunit-like [KO:K02327] [EC:2.7.7.7]
124036538  pold2; DNA polymerase delta subunit 2 [KO:K02328]
124030766  LOW QUALITY PROTEIN: DNA polymerase delta subunit 2-like [KO:K02328]
123993726  pold3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
124002035  pold4; LOW QUALITY PROTEIN: DNA polymerase delta subunit 4 [KO:K03505]
124009810  lig1; LOW QUALITY PROTEIN: DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
LinkDB

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