KEGG   PATHWAY: osa04146
Entry
osa04146                    Pathway                                
Name
Peroxisome - Oryza sativa japonica (Japanese rice)
Description
Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.
Class
Cellular Processes; Transport and catabolism
Pathway map
osa04146  Peroxisome
osa04146

Other DBs
GO: 0005777
Organism
Oryza sativa japonica (Japanese rice) [GN:osa]
Gene
4328136  peroxisome biogenesis protein 16 [KO:K13335]
4346691  peroxisome biogenesis protein 3-1 [KO:K13336]
4330220  peroxisome biogenesis protein 19-1 [KO:K13337]
4346288  peroxisomal ATPase PEX1 [KO:K13338]
4337006  peroxisomal ATPase PEX6 [KO:K13339]
4328861  peroxisome biogenesis protein 7 [KO:K13341]
4345945  peroxisome biogenesis protein 5 isoform X1 [KO:K13342]
4337525  peroxisomal membrane protein PEX14 isoform X1 [KO:K13343]
9268894  peroxisomal membrane protein PEX14 isoform X1 [KO:K13343]
4342419  peroxisomal membrane protein 13 [KO:K13344]
4348849  peroxisome biogenesis protein 12 [KO:K13345]
4343871  peroxisome biogenesis factor 10 [KO:K13346]
4343872  stress-response A/B barrel domain-containing protein UP3 [KO:K13346]
4338276  peroxisome biogenesis protein 2 [KO:K06664]
4328779  peroxisomal membrane protein PMP22 [KO:K13347]
4349678  protein SYM1 [KO:K13347]
107276049  protein SYM1 [KO:K13347]
4346360  peroxisomal membrane protein PMP22 [KO:K13347]
4352306  uncharacterized protein [KO:K13348]
4327186  uncharacterized protein [KO:K13348]
4324427  uncharacterized protein [KO:K13348]
4333336  uncharacterized protein [KO:K13348]
4332347  peroxisomal nicotinamide adenine dinucleotide carrier [KO:K13354]
4347528  peroxisomal nicotinamide adenine dinucleotide carrier [KO:K13354]
4328774  peroxisomal nicotinamide adenine dinucleotide carrier [KO:K13354]
4324491  2-HPCL; 2-hydroxyacyl-CoA lyase [KO:K12261] [EC:4.1.2.63]
4333863  OsJ_12289; phytanoyl-CoA dioxygenase 1 [KO:K00477] [EC:1.14.11.18]
4339087  OsJ_18897; phytanoyl-CoA dioxygenase 2 isoform X1 [KO:K00477] [EC:1.14.11.18]
4340986  acyl-coenzyme A oxidase 3, peroxisomal isoform X2 [KO:K00232] [EC:1.3.3.6]
4339846  peroxisomal acyl-coenzyme A oxidase 1 [KO:K00232] [EC:1.3.3.6]
4350881  acyl-coenzyme A oxidase 2, peroxisomal [KO:K00232] [EC:1.3.3.6]
4324062  acyl-coenzyme A oxidase 4, peroxisomal isoform X1 [KO:K00232] [EC:1.3.3.6]
4340976  acyl-coenzyme A oxidase 4, peroxisomal [KO:K00232] [EC:1.3.3.6]
4337904  acyl-coenzyme A oxidase 4, peroxisomal isoform X1 [KO:K00232] [EC:1.3.3.6]
4340972  acyl-coenzyme A oxidase 4, peroxisomal isoform X1 [KO:K00232] [EC:1.3.3.6]
4331150  3-ketoacyl-CoA thiolase 2, peroxisomal [KO:K07513] [EC:2.3.1.16]
4348804  3-ketoacyl-CoA thiolase 2, peroxisomal [KO:K07513] [EC:2.3.1.16]
129493522  Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR) [KO:K13237] [EC:1.3.1.124]
4327232  delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal [KO:K12663] [EC:5.3.3.21]
4324471  ABC transporter D family member 1 [KO:K25819] [EC:7.6.2.4]
4337574  ABC transporter D family member 1 [KO:K25819] [EC:7.6.2.4]
4338395  long chain acyl-CoA synthetase 8 [KO:K01897] [EC:6.2.1.3]
4334764  probable acyl-activating enzyme 16, chloroplastic [KO:K01897] [EC:6.2.1.3]
4351483  long chain acyl-CoA synthetase 6, peroxisomal [KO:K01897] [EC:6.2.1.3]
4351610  long chain acyl-CoA synthetase 9, chloroplastic [KO:K01897] [EC:6.2.1.3]
4350728  probable CoA ligase CCL6 [KO:K01897] [EC:6.2.1.3]
4340187  long chain acyl-CoA synthetase 4 [KO:K01897] [EC:6.2.1.3]
4324180  long chain acyl-CoA synthetase 4 isoform X1 [KO:K01897] [EC:6.2.1.3]
4349764  long chain acyl-CoA synthetase 6, peroxisomal isoform X1 [KO:K01897] [EC:6.2.1.3]
4337714  long chain acyl-CoA synthetase 1 [KO:K01897] [EC:6.2.1.3]
4324393  long chain acyl-CoA synthetase 4 isoform X1 [KO:K01897] [EC:6.2.1.3]
4349889  long chain acyl-CoA synthetase 9, chloroplastic [KO:K01897] [EC:6.2.1.3]
4340074  nudix hydrolase 19, chloroplastic [KO:K03426] [EC:3.6.1.22]
4346967  uncharacterized protein isoform X2 [KO:K01578] [EC:4.1.1.9]
4347887  putative fatty acyl-CoA reductase 7 [KO:K13356] [EC:1.2.1.84]
4331746  fatty acyl-CoA reductase 2 [KO:K13356] [EC:1.2.1.84]
4335559  fatty acyl-CoA reductase 1 [KO:K13356] [EC:1.2.1.84]
4335562  fatty acyl-CoA reductase 1 [KO:K13356] [EC:1.2.1.84]
4346301  fatty acyl-CoA reductase 1 [KO:K13356] [EC:1.2.1.84]
107278422  fatty acyl-CoA reductase 1 isoform X1 [KO:K13356] [EC:1.2.1.84]
9267826  fatty acyl-CoA reductase 1 [KO:K13356] [EC:1.2.1.84]
107276319  alcohol-forming fatty acyl-CoA reductase [KO:K13356] [EC:1.2.1.84]
4348331  mevalonate kinase [KO:K00869] [EC:2.7.1.36]
4345962  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
4336353  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
4339674  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
4327213  cytosolic isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
4324176  cytosolic isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
4327296  probable sarcosine oxidase [KO:K00306] [EC:1.5.3.1 1.5.3.7]
107276062  probable sarcosine oxidase [KO:K00306] [EC:1.5.3.1 1.5.3.7]
4352447  probable sarcosine oxidase [KO:K00306] [EC:1.5.3.1 1.5.3.7]
4326266  uncharacterized protein isoform X1 [KO:K01640] [EC:4.1.3.4]
4351434  uncharacterized protein isoform X1 [KO:K01640] [EC:4.1.3.4]
4349718  uncharacterized protein [KO:K01640] [EC:4.1.3.4]
4334349  GLO1; glycolate oxidase 1 [KO:K11517] [EC:1.1.3.15]
4337048  GLO3; glycolate oxidase 3 isoform 1 [KO:K11517] [EC:1.1.3.15]
4342420  GLO5; glycolate oxidase 5 [KO:K11517] [EC:1.1.3.15]
4343908  GLO4; peroxisomal (S)-2-hydroxy-acid oxidase GLO4 [KO:K11517] [EC:1.1.3.15]
4328073  CAT-A; catalase isozyme A [KO:K03781] [EC:1.11.1.6]
4342124  CAT-B; catalase isozyme B [KO:K03781] [EC:1.11.1.6]
4331509  catalase isozyme C [KO:K03781] [EC:1.11.1.6]
4346329  P0543D10.3; superoxide dismutase [Cu-Zn], chloroplastic [KO:K04565] [EC:1.15.1.1]
4332082  superoxide dismutase [Cu-Zn] 2 isoform X1 [KO:K04565] [EC:1.15.1.1]
4332846  SODCC.1; superoxide dismutase [Cu-Zn] 1 isoform X1 [KO:K04565] [EC:1.15.1.1]
4344210  SODCC.2; superoxide dismutase [Cu-Zn] 2 [KO:K04565] [EC:1.15.1.1]
4338417  OsJ_18067; superoxide dismutase [Mn], mitochondrial [KO:K04564] [EC:1.15.1.1]
4339922  OsJ_19901; superoxide dismutase [Fe] 1, chloroplastic [KO:K04564] [EC:1.15.1.1]
4340091  superoxide dismutase [Fe] 2, chloroplastic isoform X1 [KO:K04564] [EC:1.15.1.1]
4333171  OsJ_11360; xanthine dehydrogenase isoform 1 [KO:K00106] [EC:1.17.1.4 1.17.3.2]
4346459  tropinone reductase-like 3 [KO:K11147] [EC:1.1.-.-]
4336980   
9266366   
Reference
  Authors
Wanders RJ, Waterham HR
  Title
Peroxisomal disorders: the single peroxisomal enzyme deficiencies.
  Journal
Biochim Biophys Acta 1763:1707-20 (2006)
DOI:10.1016/j.bbamcr.2006.08.010
Reference
  Authors
Steinberg SJ, Dodt G, Raymond GV, Braverman NE, Moser AB, Moser HW
  Title
Peroxisome biogenesis disorders.
  Journal
Biochim Biophys Acta 1763:1733-48 (2006)
DOI:10.1016/j.bbamcr.2006.09.010
Reference
  Authors
Rottensteiner H, Theodoulou FL
  Title
The ins and outs of peroxisomes: co-ordination of membrane transport and peroxisomal metabolism.
  Journal
Biochim Biophys Acta 1763:1527-40 (2006)
DOI:10.1016/j.bbamcr.2006.08.012
Reference
  Authors
Iida R, Yasuda T, Tsubota E, Takatsuka H, Matsuki T, Kishi K
  Title
Human Mpv17-like protein is localized in peroxisomes and regulates expression of antioxidant enzymes.
  Journal
Biochem Biophys Res Commun 344:948-54 (2006)
DOI:10.1016/j.bbrc.2006.04.008
Related
pathway
osa00071  Fatty acid degradation
osa00230  Purine metabolism
osa00564  Glycerophospholipid metabolism
osa00565  Ether lipid metabolism
osa00900  Terpenoid backbone biosynthesis
KO pathway
ko04146   
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