KEGG   PATHWAY: osa00230
Entry
osa00230                    Pathway                                
Name
Purine metabolism - Oryza sativa japonica (Japanese rice) (RefSeq)
Class
Metabolism; Nucleotide metabolism
Pathway map
osa00230  Purine metabolism
osa00230

Module
osa_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:osa00230]
osa_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:osa00230]
osa_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:osa00230]
osa_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:osa00230]
osa_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:osa00230]
Other DBs
GO: 0006163 0042278
Organism
Oryza sativa japonica (Japanese rice) (RefSeq) [GN:osa]
Gene
4344352  manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [KO:K01517] [EC:3.6.1.13 3.6.1.16 3.6.1.53]
4346295  manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like [KO:K01517] [EC:3.6.1.13 3.6.1.16 3.6.1.53]
4347801  nudix hydrolase 23, chloroplastic [KO:K18453] [EC:3.6.1.13 3.6.1.18]
4339996  nudix hydrolase 14, chloroplastic [KO:K18447] [EC:3.6.1.21]
4333895  phosphoglucomutase, cytoplasmic 2 [KO:K01835] [EC:5.4.2.2]
4348230  phosphoglucomutase, chloroplastic [KO:K01835] [EC:5.4.2.2]
4328168  ribose-phosphate pyrophosphokinase 1, chloroplastic [KO:K00948] [EC:2.7.6.1]
4341535  ribose-phosphate pyrophosphokinase 2, chloroplastic isoform X1 [KO:K00948] [EC:2.7.6.1]
107276220  ribose-phosphate pyrophosphokinase 1-like [KO:K00948] [EC:2.7.6.1]
4338879  amidophosphoribosyltransferase, chloroplastic [KO:K00764] [EC:2.4.2.14]
4324764  amidophosphoribosyltransferase, chloroplastic [KO:K00764] [EC:2.4.2.14]
4344854  phosphoribosylamine--glycine ligase isoform X1 [KO:K01945] [EC:6.3.4.13]
4351721  phosphoribosylamine--glycine ligase isoform X1 [KO:K01945] [EC:6.3.4.13]
4345953  phosphoribosylglycinamide formyltransferase, chloroplastic [KO:K00601] [EC:2.1.2.2]
4324899  probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial isoform X1 [KO:K01952] [EC:6.3.5.3]
107277292  probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial [KO:K01952] [EC:6.3.5.3]
4334671  phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic [KO:K01933] [EC:6.3.3.1]
4327345  phosphoribosylaminoimidazole carboxylase, chloroplastic isoform X1 [KO:K11808] [EC:4.1.1.21]
4347318  phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [KO:K01923] [EC:6.3.2.6]
4332642  adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
4344931  bifunctional purine biosynthesis protein PurH isoform X1 [KO:K00602] [EC:2.1.2.3 3.5.4.10]
4343246  adenine phosphoribosyltransferase 4 isoform X1 [KO:K00759] [EC:2.4.2.7]
4329972  adenine phosphoribosyltransferase 4 [KO:K00759] [EC:2.4.2.7]
4336327  adenine phosphoribosyltransferase 2 [KO:K00759] [EC:2.4.2.7]
4352670  adenine phosphoribosyltransferase 1 [KO:K00759] [EC:2.4.2.7]
107275550  adenine phosphoribosyltransferase 1-like [KO:K00759] [EC:2.4.2.7]
4327823  5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
4342678  5'-nucleotidase SurE isoform X1 [KO:K03787] [EC:3.1.3.5 3.1.3.6]
107276353  hypoxanthine-guanine phosphoribosyltransferase-like [KO:K00760] [EC:2.4.2.8]
4334308  inosine-5'-monophosphate dehydrogenase [KO:K00088] [EC:1.1.1.205]
4339815  nucleoside diphosphate kinase 3 [KO:K00940] [EC:2.7.4.6]
4343275  nucleoside diphosphate kinase 1 [KO:K00940] [EC:2.7.4.6]
4352460  nucleoside diphosphate kinase 2, chloroplastic [KO:K00940] [EC:2.7.4.6]
4349403  nucleoside diphosphate kinase 1 [KO:K00940] [EC:2.7.4.6]
4332967  probable apyrase 6 [KO:K01510] [EC:3.6.1.5]
4345665  probable apyrase 5 [KO:K01510] [EC:3.6.1.5]
4344315  probable apyrase 2 [KO:K14641] [EC:3.6.1.5]
4350420  probable apyrase 3 [KO:K14641] [EC:3.6.1.5]
4332721  probable apyrase 1 [KO:K14641] [EC:3.6.1.5]
4349645  probable apyrase 3 [KO:K14641] [EC:3.6.1.5]
4349647  probable apyrase 3 [KO:K14641] [EC:3.6.1.5]
4351367  probable apyrase 3 [KO:K14641] [EC:3.6.1.5]
4348803  inosine triphosphate pyrophosphatase [KO:K01519] [EC:3.6.1.66]
4333171  xanthine dehydrogenase isoform X1 [KO:K00106] [EC:1.17.1.4 1.17.3.2]
4345281  GMP synthase [glutamine-hydrolyzing] [KO:K01951] [EC:6.3.5.2]
4332674  guanylate kinase 2, chloroplastic/mitochondrial [KO:K00942] [EC:2.7.4.8]
4352344  guanylate kinase 1 [KO:K00942] [EC:2.7.4.8]
4340258  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
4331059  ribonucleoside-diphosphate reductase large subunit [KO:K10807] [EC:1.17.4.1]
4339981  ribonucleoside-diphosphate reductase small chain [KO:K10808] [EC:1.17.4.1]
9266846  ribonucleoside-diphosphate reductase small chain [KO:K10808] [EC:1.17.4.1]
4326555  HD domain-containing protein 2 homolog [KO:K07023] [EC:3.1.3.89]
4328498  HD domain-containing protein 2 [KO:K07023] [EC:3.1.3.89]
4337888  probable GTP diphosphokinase CRSH1, chloroplastic [KO:K00951] [EC:2.7.6.5]
4345756  probable GTP diphosphokinase RSH2, chloroplastic [KO:K00951] [EC:2.7.6.5]
4337890  probable GTP diphosphokinase CRSH2, chloroplastic [KO:K00951] [EC:2.7.6.5]
9270381  probable GTP diphosphokinase CRSH3, chloroplastic [KO:K00951] [EC:2.7.6.5]
4347182  probable GTP diphosphokinase RSH3, chloroplastic [KO:K00951] [EC:2.7.6.5]
4332791  putative GTP diphosphokinase RSH1, chloroplastic [KO:K00951] [EC:2.7.6.5]
4343883  probable GTP diphosphokinase RSH3, chloroplastic [KO:K00951] [EC:2.7.6.5]
4333815  adenylosuccinate synthetase 2, chloroplastic [KO:K01939] [EC:6.3.4.4]
4331792  adenylosuccinate synthetase 1, chloroplastic [KO:K01939] [EC:6.3.4.4]
4344386  probable AMP deaminase [KO:K01490] [EC:3.5.4.6]
4338495  probable AMP deaminase [KO:K01490] [EC:3.5.4.6]
4336412  adenosine kinase 2 [KO:K00856] [EC:2.7.1.20]
4330032  adenosine kinase 2 [KO:K00856] [EC:2.7.1.20]
4350358  adenylate kinase 4 [KO:K00939] [EC:2.7.4.3]
4345177  probable adenylate kinase 5, chloroplastic [KO:K00939] [EC:2.7.4.3]
4344470  probable adenylate kinase 2, chloroplastic [KO:K00939] [EC:2.7.4.3]
4351850  adenylate kinase 3 [KO:K00939] [EC:2.7.4.3]
4331502  probable adenylate kinase 1, chloroplastic isoform X1 [KO:K00939] [EC:2.7.4.3]
107276068  adenylate kinase 4 [KO:K00939] [EC:2.7.4.3]
4337358  probable adenylate kinase 6, chloroplastic [KO:K00939] [EC:2.7.4.3]
4344534  probable adenylate kinase 7, mitochondrial [KO:K00939] [EC:2.7.4.3]
4343011  adenylate kinase isoenzyme 6 homolog [KO:K18532] [EC:2.7.4.3]
4327327  ectonucleotide pyrophosphatase/phosphodiesterase family member 1 [KO:K01513] [EC:3.1.4.1 3.6.1.9]
4349630  bis(5'-adenosyl)-triphosphatase [KO:K01522] [EC:3.6.1.29]
4351353  bis(5'-adenosyl)-triphosphatase [KO:K01522] [EC:3.6.1.29]
4351354  bis(5'-adenosyl)-triphosphatase [KO:K01522] [EC:3.6.1.29]
4334073  ATP-sulfurylase 3, chloroplastic [KO:K13811] [EC:2.7.7.4 2.7.1.25]
4334932  LOW QUALITY PROTEIN: ATP sulfurylase 2 [KO:K13811] [EC:2.7.7.4 2.7.1.25]
4350977  adenylyl-sulfate kinase 3 [KO:K00860] [EC:2.7.1.25]
4343681  adenylyl-sulfate kinase 3 [KO:K00860] [EC:2.7.1.25]
9272308  adenylyl-sulfate kinase 3 [KO:K00860] [EC:2.7.1.25]
4324793  uricase [KO:K00365] [EC:1.7.3.3]
4333020  uric acid degradation bifunctional protein TTL isoform X1 [KO:K13484] [EC:3.5.2.17 4.1.1.97]
4337428  probable allantoinase [KO:K01466] [EC:3.5.2.5]
4341777  probable allantoate deiminase [KO:K02083] [EC:3.5.3.9]
4343286  probable (S)-ureidoglycine aminohydrolase [KO:K14977] [EC:3.5.3.26]
4352706  probable ureidoglycolate hydrolase [KO:K18151] [EC:3.5.1.116]
107279825  urease isoform X1 [KO:K01427] [EC:3.5.1.5]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
osa00030  Pentose phosphate pathway
osa00220  Arginine biosynthesis
osa00250  Alanine, aspartate and glutamate metabolism
osa00260  Glycine, serine and threonine metabolism
osa00340  Histidine metabolism
osa00630  Glyoxylate and dicarboxylate metabolism
osa00730  Thiamine metabolism
osa00740  Riboflavin metabolism
osa00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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