Entry
Name
Endocytosis - Phyllopteryx taeniolatus (common seadragon)
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Phyllopteryx taeniolatus (common seadragon) [GN:
ptao ]
Gene
133488724 zfyve9a; zinc finger FYVE domain-containing protein 9 isoform X1 [KO:K04679 ]
133464954 zfyve16; zinc finger FYVE domain-containing protein 16 isoform X1 [KO:K04679 ]
133480799 zfyve9b; zinc finger FYVE domain-containing protein 9 [KO:K04679 ]
133478470 smad3b; mothers against decapentaplegic homolog 3b isoform X1 [KO:K23605 ]
133470063 sh3kbp1; SH3 domain-containing kinase-binding protein 1 isoform X1 [KO:K12470 ]
133476873 sh3gl2a; SH3 domain containing GRB2 like 2a, endophilin A1 isoform X1 [KO:K11247 ]
133480793 bin1b; myc box-dependent-interacting protein 1b isoform X1 [KO:K12562 ]
133488675 epidermal growth factor receptor substrate 15-like isoform X1 [KO:K12472 ]
133488873 epidermal growth factor receptor substrate 15-like 1 isoform X1 [KO:K12472 ]
133480606 eps15; epidermal growth factor receptor substrate 15 isoform X1 [KO:K12472 ]
133480998 eps15l1a; epidermal growth factor receptor substrate 15-like 1 isoform X1 [KO:K12472 ]
133470909 ldlrap1a; low density lipoprotein receptor adapter protein 1a [KO:K12474 ]
133472366 si:dkey-19b23.8; uncharacterized protein si:dkey-19b23.8 [KO:K12474 ]
133487682 ldlrap1b; low density lipoprotein receptor adapter protein 1b isoform X1 [KO:K12474 ]
133477689 LOW QUALITY PROTEIN: actin nucleation-promoting factor WASL-like [KO:K23612 ]
133472253 actin nucleation-promoting factor WASL-like isoform X1 [KO:K23612 ]
133472256 actin nucleation-promoting factor WASL-like isoform X1 [KO:K23612 ]
133476672 actin-related protein 2/3 complex subunit 1A isoform X1 [KO:K05757 ]
133465405 zgc:86896; actin-related protein 2/3 complex subunit 1A-A isoform X1 [KO:K05757 ]
133483256 arpc4l; actin related protein 2/3 complex, subunit 4, like [KO:K05755 ]
133470869 wipf3; WAS/WASL-interacting protein family member 3 isoform X1 [KO:K19475 ]
133481947 hspa8b; heat shock protein family A (Hsp70) member 8b [KO:K03283 ]
133481412 dnajc6; putative tyrosine-protein phosphatase auxilin isoform X1 [KO:K09526 ]
133489905 capza1b; F-actin-capping protein subunit alpha-1b isoform X1 [KO:K10364 ]
133483382 capzb; F-actin-capping protein subunit beta isoform X1 [KO:K10365 ]
133487564 vps29; vacuolar protein sorting-associated protein 29 isoform X1 [KO:K18467 ]
133466989 vps26bl; vacuolar protein sorting-associated protein 26B-like [KO:K18466 ]
133474331 vps26a; vacuolar protein sorting-associated protein 26A isoform X1 [KO:K18466 ]
133481891 vacuolar protein sorting-associated protein 26B-like isoform X1 [KO:K18466 ]
133468744 vps35; vacuolar protein sorting-associated protein 35 [KO:K18468 ]
133466131 hgs; hepatocyte growth factor-regulated tyrosine kinase substrate isoform X1 [KO:K12182 ]
133486852 stam2; signal transducing adapter molecule 2 isoform X1 [KO:K04705 ]
133471150 vps28; vacuolar protein sorting-associated protein 28 homolog [KO:K12184 ]
133477296 vps37c; vacuolar protein sorting-associated protein 37C isoform X1 [KO:K12185 ]
133466999 vps37d; vacuolar protein sorting-associated protein 37B isoform X1 [KO:K12185 ]
133476251 vps37a; vacuolar protein sorting-associated protein 37A isoform X1 [KO:K12185 ]
133467492 vps36; vacuolar protein-sorting-associated protein 36 [KO:K12190 ]
133469033 vps25; vacuolar protein-sorting-associated protein 25 [KO:K12189 ]
133468954 chmp6b; charged multivesicular body protein 6 isoform X1 [KO:K12195 ]
133483935 charged multivesicular body protein 4b-like isoform X1 [KO:K12194 ]
133474621 charged multivesicular body protein 4b-like isoform X1 [KO:K12194 ]
133487534 chmp3; charged multivesicular body protein 3 isoform X1 [KO:K12193 ]
133486764 chmp2ba; charged multivesicular body protein 2Ba isoform X1 [KO:K12192 ]
133477810 vps4a; vacuolar protein sorting-associated protein 4A isoform X1 [KO:K12196 ]
133488466 vps4b; vacuolar protein sorting-associated protein 4B isoform X1 [KO:K12196 ]
133468714 vta1; vacuolar protein sorting-associated protein VTA1 homolog isoform X1 [KO:K12199 ]
133471104 pdcd6ip; programmed cell death 6-interacting protein isoform X1 [KO:K12200 ]
133468199 igf2r; cation-independent mannose-6-phosphate receptor [KO:K06564 ]
133466366 il2rb; interleukin-2 receptor subunit beta isoform X1 [KO:K05069 ]
133467109 LOW QUALITY PROTEIN: cytokine receptor common subunit gamma-like [KO:K05070 ]
133470706 major histocompatibility complex class I-related gene protein-like isoform X1 [KO:K06751 ]
133470775 major histocompatibility complex class I-related gene protein-like [KO:K06751 ]
133470777 major histocompatibility complex class I-related gene protein-like isoform X1 [KO:K06751 ]
133470781 major histocompatibility complex class I-related gene protein-like isoform X1 [KO:K06751 ]
133470924 class I histocompatibility antigen, F10 alpha chain-like [KO:K06751 ]
133470925 class I histocompatibility antigen, F10 alpha chain-like isoform X1 [KO:K06751 ]
133470967 major histocompatibility complex class I-related gene protein-like [KO:K06751 ]
133471079 major histocompatibility complex class I-related gene protein-like isoform X1 [KO:K06751 ]
133471272 major histocompatibility complex class I-related gene protein-like isoform X1 [KO:K06751 ]
133471280 major histocompatibility complex class I-related gene protein-like isoform X1 [KO:K06751 ]
133471481 major histocompatibility complex class I-related gene protein-like [KO:K06751 ]
133471498 H-2 class I histocompatibility antigen, D-D alpha chain-like isoform X1 [KO:K06751 ]
133471500 class I histocompatibility antigen, F10 alpha chain-like isoform X1 [KO:K06751 ]
133471501 H-2 class I histocompatibility antigen, K-Q alpha chain-like isoform X1 [KO:K06751 ]
133471502 major histocompatibility complex class I-related gene protein-like isoform X1 [KO:K06751 ]
133471503 H-2 class I histocompatibility antigen, Q9 alpha chain-like isoform X1 [KO:K06751 ]
133471504 major histocompatibility complex class I-related gene protein-like isoform X1 [KO:K06751 ]
133471505 major histocompatibility complex class I-related gene protein-like isoform X1 [KO:K06751 ]
133471507 major histocompatibility complex class I-related gene protein-like [KO:K06751 ]
133471508 major histocompatibility complex class I-related gene protein-like [KO:K06751 ]
133473269 H-2 class I histocompatibility antigen, Q9 alpha chain-like isoform X1 [KO:K06751 ]
133473505 major histocompatibility complex class I-related gene protein-like [KO:K06751 ]
133473752 major histocompatibility complex class I-related gene protein-like [KO:K06751 ]
133473933 major histocompatibility complex class I-related gene protein-like isoform X1 [KO:K06751 ]
133467287 rabep1; rab GTPase-binding effector protein 1 isoform X1 [KO:K12480 ]
133484538 rufy1; RUN and FYVE domain-containing protein 1 isoform X1 [KO:K12482 ]
133474342 rufy2; RUN and FYVE domain-containing protein 2 isoform X1 [KO:K12482 ]
133471100 vps45; vacuolar protein sorting-associated protein 45 [KO:K12479 ]
133485097 rab11fip5b; uncharacterized protein rab11fip5b isoform X1 [KO:K12484 ]
133487327 rab11fip5a; uncharacterized protein rab11fip5a isoform X1 [KO:K12484 ]
133475527 rab11fip1a; rab11 family-interacting protein 1 isoform X1 [KO:K12484 ]
133477144 rab11fip4b; rab11 family-interacting protein 4B isoform X1 [KO:K12485 ]
133465775 rab11fip4a; rab11 family-interacting protein 4A isoform X1 [KO:K12485 ]
133468868 rab11fip3; rab11 family-interacting protein 3 isoform X1 [KO:K12485 ]
133470872 pard6gb; par-6 family cell polarity regulator gamma b isoform X1 [KO:K06093 ]
133485459 pard6b; partitioning defective 6 homolog beta isoform X1 [KO:K06093 ]
133476435 smap1; stromal membrane-associated protein 1 isoform X1 [KO:K12486 ]
133485363 stromal membrane-associated protein 1-like isoform X1 [KO:K12486 ]
133475418 git2a; ARF GTPase-activating protein GIT2a isoform X1 [KO:K12487 ]
133470433 asap1b; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K12488 ]
133483925 unm_sa1614; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K12488 ]
133487321 asap3; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12488 ]
133468467 arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2-like isoform X1 [KO:K12488 ]
133488145 asap2a; arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2a isoform X1 [KO:K12488 ]
133483459 arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3-like isoform X1 [KO:K12489 ]
133472773 acap1; arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K12489 ]
133474171 arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3-like isoform X1 [KO:K12489 ]
133480386 arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2-like isoform X1 [KO:K12489 ]
133482278 zgc:162872; BAR_ACAPs and ArfGap_ACAP domain-containing protein isoform X1 [KO:K12489 ]
133482039 arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1-like isoform X1 [KO:K18439 ]
133467036 arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K18440 ]
133472895 arap2; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K18440 ]
133484557 arap3; arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12490 ]
133488560 agap3; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 isoform X1 [KO:K12491 ]
133480985 agap1; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K12491 ]
133477147 agap2; arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 isoform X1 [KO:K17848 ]
133483624 arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1-like [KO:K17848 ]
133483340 arfgap1; ADP-ribosylation factor GTPase-activating protein 1 isoform X1 [KO:K12492 ]
133471754 arfgap3; ADP-ribosylation factor GTPase-activating protein 3 [KO:K12493 ]
133474461 arfgap2; ADP-ribosylation factor GTPase-activating protein 2 [KO:K12493 ]
133484525 psd2; PH and SEC7 domain-containing protein 2 isoform X1 [KO:K12494 ]
133469125 PH and SEC7 domain-containing protein 1-like isoform X1 [KO:K12494 ]
133476806 iqsec2b; IQ motif and SEC7 domain-containing protein 1 isoform X1 [KO:K12495 ]
133478306 iqsec3b; IQ motif and SEC7 domain-containing protein 3 isoform X1 [KO:K12495 ]
133472049 iqsec3a; IQ motif and SEC7 domain-containing protein 3 isoform X1 [KO:K12495 ]
133479524 IQ motif and SEC7 domain-containing protein 1-like isoform X1 [KO:K12495 ]
133487548 IQ motif and SEC7 domain-containing protein 1-like isoform X1 [KO:K12495 ]
133469930 arfgef1; brefeldin A-inhibited guanine nucleotide-exchange protein 1 isoform X1 [KO:K18442 ]
133485449 arfgef2; brefeldin A-inhibited guanine nucleotide-exchange protein 2 isoform X1 [KO:K18442 ]
133486058 gbf1; Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X1 [KO:K18443 ]
Compound
C04549 1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637 1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981 Phosphatidylinositol-3,4,5-trisphosphate
C11556 1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
Authors
Acconcia F, Sigismund S, Polo S
Title
Ubiquitin in trafficking: the network at work.
Journal
Reference
Authors
Donaldson JG, Porat-Shliom N, Cohen LA
Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
Journal
Reference
Authors
Sorkin A
Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
Journal
Reference
Authors
Raiborg C, Stenmark H
Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
Journal
Reference
Authors
Scita G, Di Fiore PP
Title
The endocytic matrix.
Journal
Reference
Authors
Le Roy C, Wrana JL
Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
Journal
Reference
Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
Title
The early endosome: a busy sorting station for proteins at the crossroads.
Journal
Reference
Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
Title
Viral entry, lipid rafts and caveosomes.
Journal
Reference
Authors
Grant BD, Donaldson JG
Title
Pathways and mechanisms of endocytic recycling.
Journal
Reference
Authors
Cullen PJ, Korswagen HC
Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
Journal
Related pathway
ptao04060 Cytokine-cytokine receptor interaction
ptao04070 Phosphatidylinositol signaling system
ptao04130 SNARE interactions in vesicular transport
KO pathway
LinkDB
All DBs