KEGG   PATHWAY: tpf03420
Entry
tpf03420                    Pathway                                
Name
Nucleotide excision repair - Tetrapisispora phaffii
Description
Nucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the NER pathway are linked to at least three diseases: xeroderma pigmentosum (XP), Cockayne syndrome (CS), and trichothiodystrophy (TTD). The repair of damaged DNA involves at least 30 polypeptides within two different sub-pathways of NER known as transcription-coupled repair (TCR-NER) and global genome repair (GGR-NER). TCR refers to the expedited repair of lesions located in the actively transcribed strand of genes by RNA polymerase II (RNAP II). In GGR-NER the first step of damage recognition involves XPC-hHR23B complex together with XPE complex (in prokaryotes, uvrAB complex). The following steps of GGR-NER and TCR-NER are similar.
Class
Genetic Information Processing; Replication and repair
Pathway map
tpf03420  Nucleotide excision repair
tpf03420

Other DBs
GO: 0006289
Organism
Tetrapisispora phaffii [GN:tpf]
Gene
TPHA_0B01310  TPHA0B01310; hypothetical protein [KO:K03657] [EC:5.6.2.4]
TPHA_0P01470  TPHA0P01470; hypothetical protein [KO:K03868] [EC:2.3.2.32]
TPHA_0B03450  TPHA0B03450; hypothetical protein [KO:K10838]
TPHA_0O00440  TPHA0O00440; hypothetical protein [KO:K10839]
TPHA_0M00990  TPHA0M00990; hypothetical protein [KO:K10570]
TPHA_0B04000  TPHA0B04000; hypothetical protein [KO:K10841]
TPHA_0A03070  TPHA0A03070; hypothetical protein [KO:K03006] [EC:2.7.7.6]
TPHA_0J02910  TPHA0J02910; hypothetical protein [KO:K03010] [EC:2.7.7.6]
TPHA_0C04510  TPHA0C04510; hypothetical protein [KO:K03011]
TPHA_0B03010  TPHA0B03010; hypothetical protein [KO:K03012]
TPHA_0M00690  TPHA0M00690; hypothetical protein [KO:K03013]
TPHA_0G00260  TPHA0G00260; hypothetical protein [KO:K03014]
TPHA_0J02900  TPHA0J02900; hypothetical protein [KO:K03015]
TPHA_0F03280  TPHA0F03280; hypothetical protein [KO:K03016]
TPHA_0E02850  TPHA0E02850; hypothetical protein [KO:K03017]
TPHA_0G01880  TPHA0G01880; hypothetical protein [KO:K03007]
TPHA_0F02250  TPHA0F02250; hypothetical protein [KO:K03009]
TPHA_0J00410  TPHA0J00410; hypothetical protein [KO:K03008]
TPHA_0C04650  TPHA0C04650; hypothetical protein [KO:K02202] [EC:2.7.11.22 2.7.11.23]
TPHA_0K00250  TPHA0K00250; hypothetical protein [KO:K10842]
TPHA_0K00600  TPHA0K00600; hypothetical protein [KO:K06634]
TPHA_0E00270  TPHA0E00270; hypothetical protein [KO:K10843] [EC:5.6.2.4]
TPHA_0A01920  TPHA0A01920; hypothetical protein [KO:K10844] [EC:5.6.2.3]
TPHA_0D04400  TPHA0D04400; hypothetical protein [KO:K10845]
TPHA_0E01190  TPHA0E01190; hypothetical protein [KO:K03141]
TPHA_0D01980  TPHA0D01980; hypothetical protein [KO:K03141]
TPHA_0E02960  TPHA0E02960; hypothetical protein [KO:K03142]
TPHA_0A03670  TPHA0A03670; hypothetical protein [KO:K03143]
TPHA_0A01010  TPHA0A01010; hypothetical protein [KO:K03144]
TPHA_0H01260  TPHA0H01260; hypothetical protein [KO:K10846]
TPHA_0H02120  TPHA0H02120; hypothetical protein [KO:K10847]
TPHA_0K01560  TPHA0K01560; hypothetical protein [KO:K07466]
TPHA_0P01430  TPHA0P01430; hypothetical protein [KO:K10739]
TPHA_0C01850  TPHA0C01850; hypothetical protein [KO:K10848] [EC:3.1.-.-]
TPHA_0I00120  TPHA0I00120; hypothetical protein [KO:K10849]
TPHA_0C04580  TPHA0C04580; hypothetical protein [KO:K02327] [EC:2.7.7.7]
TPHA_0J03100  TPHA0J03100; hypothetical protein [KO:K02328]
TPHA_0B04060  TPHA0B04060; hypothetical protein [KO:K03504]
TPHA_0B04380  TPHA0B04380; hypothetical protein [KO:K02324] [EC:2.7.7.7]
TPHA_0I03220  TPHA0I03220; hypothetical protein [KO:K02325] [EC:2.7.7.7]
TPHA_0A01720  TPHA0A01720; hypothetical protein [KO:K02326] [EC:2.7.7.7]
TPHA_0I01210  TPHA0I01210; hypothetical protein [KO:K03506] [EC:2.7.7.7]
TPHA_0M01470  TPHA0M01470; hypothetical protein [KO:K04802]
TPHA_0F03230  TPHA0F03230; hypothetical protein [KO:K10754]
TPHA_0O00240  TPHA0O00240; hypothetical protein [KO:K10755]
TPHA_0A00710  TPHA0A00710; hypothetical protein [KO:K10755]
TPHA_0M01430  TPHA0M01430; hypothetical protein [KO:K10756]
TPHA_0P01200  TPHA0P01200; hypothetical protein [KO:K10756]
TPHA_0D04570  TPHA0D04570; hypothetical protein [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Reference
  Authors
Sugasawa K.
  Title
[Molecular mechanism of mammalian nucleotide excision repair]
  Journal
Tanpakushitsu Kakusan Koso 46:893-901 (2001)
Reference
  Authors
Nakatsu Y.
  Title
[Transcription-coupled repair and Cockayne syndrome]
  Journal
Tanpakushitsu Kakusan Koso 46:908-15 (2001)
Reference
  Authors
Nakagawa N, Masui R, Kuramitsu S.
  Title
[Structure and function of DNA repair enzyme UvrB from Thermus thermophilus HB8]
  Journal
Tanpakushitsu Kakusan Koso 46:968-75 (2001)
Reference
  Authors
Kraemer KH, Patronas NJ, Schiffmann R, Brooks BP, Tamura D, DiGiovanna JJ.
  Title
Xeroderma pigmentosum, trichothiodystrophy and Cockayne syndrome: a complex genotype-phenotype relationship.
  Journal
Neuroscience 145:1388-96 (2007)
DOI:10.1016/j.neuroscience.2006.12.020
Reference
  Authors
Saldivar JS, Wu X, Follen M, Gershenson D.
  Title
Nucleotide excision repair pathway review I: implications in ovarian cancer and platinum sensitivity.
  Journal
Gynecol Oncol 107:S56-71 (2007)
DOI:10.1016/j.ygyno.2007.07.043
Reference
  Authors
Sugasawa K.
  Title
[DNA repair pathways involving Cul4A ubiquitin ligases]
  Journal
Tanpakushitsu Kakusan Koso 51:1339-44 (2006)
Reference
  Authors
Ito S, Ando D, Tanaka K.
  Title
[Cross-talk between DNA repair and transcription: molecular mechanism and disorders]
  Journal
Tanpakushitsu Kakusan Koso 52:1823-31 (2007)
Related
pathway
tpf03020  RNA polymerase
tpf04120  Ubiquitin mediated proteolysis
KO pathway
ko03420   
LinkDB

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