KEGG   PATHWAY: ttt03018
Entry
ttt03018                    Pathway                                
Name
RNA degradation - Thermothielavioides terrestris
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
ttt03018  RNA degradation
ttt03018

Other DBs
GO: 0006401
Organism
Thermothielavioides terrestris [GN:ttt]
Gene
THITE_2092369  hypothetical protein [KO:K12584] [EC:3.6.1.59]
THITE_2074474  hypothetical protein [KO:K07573]
THITE_2042530  hypothetical protein [KO:K03679]
THITE_2046078  hypothetical protein [KO:K03681]
THITE_2112144  hypothetical protein [KO:K12586]
THITE_2115125  hypothetical protein [KO:K12587]
THITE_2123746  hypothetical protein [KO:K12589]
THITE_2055676  hypothetical protein [KO:K11600]
THITE_2097043  hypothetical protein [KO:K12590]
THITE_2170949  hypothetical protein [KO:K03678]
THITE_2113438  hypothetical protein [KO:K12585] [EC:3.1.13.-]
THITE_2117244  hypothetical protein [KO:K12591] [EC:3.1.13.-]
THITE_2064729  hypothetical protein [KO:K12592]
THITE_2110633  hypothetical protein [KO:K03514] [EC:2.7.7.19]
THITE_2123361  hypothetical protein [KO:K12598] [EC:5.6.2.6]
THITE_2111314  hypothetical protein [KO:K12599] [EC:5.6.2.6]
THITE_2117333  hypothetical protein [KO:K12600]
THITE_2123450  hypothetical protein [KO:K12601]
THITE_2108092  hypothetical protein [KO:K12603] [EC:3.1.13.4]
THITE_2110243  hypothetical protein [KO:K12604]
THITE_2115364  hypothetical protein [KO:K12605]
THITE_2110720  hypothetical protein [KO:K12580]
THITE_2109636  hypothetical protein [KO:K10643] [EC:2.3.2.27]
THITE_2118618  hypothetical protein [KO:K12581]
THITE_2110170  hypothetical protein [KO:K12606]
THITE_2108595  hypothetical protein [KO:K12608]
THITE_2112987  hypothetical protein [KO:K12609]
THITE_155482  hypothetical protein [KO:K01148] [EC:3.1.13.4]
THITE_2110364  hypothetical protein [KO:K13126]
THITE_2110294  hypothetical protein [KO:K12571] [EC:3.1.13.4]
THITE_2111447  hypothetical protein [KO:K12572]
THITE_2120251  hypothetical protein [KO:K12613] [EC:3.6.1.62]
THITE_2117632  hypothetical protein [KO:K12614] [EC:5.6.2.7]
THITE_2080037  hypothetical protein [KO:K12615]
THITE_2114307  hypothetical protein [KO:K12617]
THITE_2124020  hypothetical protein [KO:K12620]
THITE_2112526  hypothetical protein [KO:K12621]
THITE_2146609  hypothetical protein [KO:K12622]
THITE_2115403  hypothetical protein [KO:K12623]
THITE_2170099  hypothetical protein [KO:K12625]
THITE_2111451  hypothetical protein [KO:K12626]
THITE_2087360  hypothetical protein [KO:K12627]
THITE_2113774  hypothetical protein [KO:K01689] [EC:4.2.1.11]
THITE_2112932  hypothetical protein [KO:K00850] [EC:2.7.1.11]
THITE_2115183  hypothetical protein [KO:K04043]
THITE_127923  hypothetical protein [KO:K04077] [EC:5.6.1.7]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
Related
pathway
ttt03015  mRNA surveillance pathway
KO pathway
ko03018   
LinkDB

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