KEGG   PATHWAY: pfor00510
Entry
pfor00510                   Pathway                                
Name
N-Glycan biosynthesis - Poecilia formosa (Amazon molly)
Description
N-glycans or asparagine-linked glycans are major constituents of glycoproteins in eukaryotes. N-glycans are covalently attached to asparagine with the consensus sequence of Asn-X-Ser/Thr by an N-glycosidic bond, GlcNAc b1- Asn. Biosynthesis of N-glycans begins on the cytoplasmic face of the ER membrane with the transferase reaction of UDP-GlcNAc and the lipid-like precursor P-Dol (dolichol phosphate) to generate GlcNAc a1- PP-Dol. After sequential addition of monosaccharides by ALG glycosyltransferases [MD:M00055], the N-glycan precursor is attached by the OST (oligosaccharyltransferase) complex to the polypeptide chain that is being synthesized and translocated through the ER membrane. The protein-bound N-glycan precursor is subsequently trimmed, extended, and modified in the ER and Golgi by a complex series of reactions catalyzed by membrane-bound glycosidases and glycosyltransferases. N-glycans thus synthesized are classified into three types: high-mannose type, complex type, and hybrid type. Defects in N-glycan biosynthesis lead to a variety of human diseases known as congenital disorders of glycosylation [DS:H00118 H00119].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
pfor00510  N-Glycan biosynthesis
pfor00510

Module
pfor_M00072  N-glycosylation by oligosaccharyltransferase [PATH:pfor00510]
pfor_M00073  N-glycan precursor trimming [PATH:pfor00510]
pfor_M00075  N-glycan biosynthesis, complex type [PATH:pfor00510]
Other DBs
GO: 0006487
Organism
Poecilia formosa (Amazon molly) [GN:pfor]
Gene
103129744  alg8; probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [KO:K03849] [EC:2.4.1.265]
103130132  [KO:K07432] [EC:2.4.1.141]
103130223  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
103130314  [KO:K19478]
103130700  [KO:K00726] [EC:2.4.1.101]
103130786  mgat4b; alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B [KO:K00738] [EC:2.4.1.145]
103131043  [KO:K00778] [EC:2.4.3.1]
103131055  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
103131056  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
103131079  man2a1; alpha-mannosidase 2 [KO:K01231] [EC:3.2.1.114]
103132206  alg1; chitobiosyldiphosphodolichol beta-mannosyltransferase [KO:K03842] [EC:2.4.1.142]
103132418  [KO:K00738] [EC:2.4.1.145]
103133601  [KO:K00717] [EC:2.4.1.68]
103133610  [KO:K00717] [EC:2.4.1.68]
103133657  man2a2; alpha-mannosidase 2x isoform X2 [KO:K01231] [EC:3.2.1.114]
103135266  [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
103135710  b4galt2; beta-1,4-galactosyltransferase 2 [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
103136895  ganab; neutral alpha-glucosidase AB isoform X1 [KO:K05546] [EC:3.2.1.207]
103136961  [KO:K07151] [EC:2.4.99.18]
103137113  srd5a3; polyprenol reductase [KO:K12345] [EC:1.3.1.22 1.3.1.94]
103137218  alg6; dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase [KO:K03848] [EC:2.4.1.267]
103138430  dad1; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 [KO:K12668]
103139292  [KO:K01230] [EC:3.2.1.113]
103140070  [KO:K00729] [EC:2.4.1.117]
103140128  alg5; dolichyl-phosphate beta-glucosyltransferase [KO:K00729] [EC:2.4.1.117]
103140339  st6gal2; beta-galactoside alpha-2,6-sialyltransferase 2 isoform X2 [KO:K00779] [EC:2.4.3.1]
103140356  mgat4a; alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A isoform X1 [KO:K00738] [EC:2.4.1.145]
103140795  krtcap2; keratinocyte-associated protein 2 [KO:K28202]
103140872  alg2; alpha-1,3/1,6-mannosyltransferase ALG2 [KO:K03843] [EC:2.4.1.132 2.4.1.257]
103141116  alg9; alpha-1,2-mannosyltransferase ALG9 isoform X1 [KO:K03846] [EC:2.4.1.259 2.4.1.261]
103141294  tmem258; transmembrane protein 258 [KO:K26502]
103141415  mgat5; alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A [KO:K00744] [EC:2.4.1.155]
103141457  [KO:K11170] [EC:1.1.1.441]
103141937  [KO:K23741]
103142125  stt3a; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A [KO:K07151] [EC:2.4.99.18]
103143401  ostc; oligosaccharyltransferase complex subunit OSTC [KO:K26501]
103144071  rpn2; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 isoform X1 [KO:K12667]
103144103  [KO:K12667]
103144446  [KO:K07151] [EC:2.4.99.18]
103144484  dpm3; dolichol-phosphate mannosyltransferase subunit 3 [KO:K09659]
103145670  dpagt1; UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [KO:K01001] [EC:2.7.8.15]
103145772  rpn1; dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 [KO:K12666]
103147127  [KO:K03844] [EC:2.4.1.131]
103147598  mgat4c; alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X2 [KO:K13748] [EC:2.4.1.201 2.4.1.145]
103147605  [KO:K13748] [EC:2.4.1.201 2.4.1.145]
103148419  [KO:K19478]
103148420  [KO:K19478]
103148467  mogs; mannosyl-oligosaccharide glucosidase [KO:K01228] [EC:3.2.1.106]
103148804  [KO:K00736] [EC:2.4.1.143]
103148942  alg3; dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase isoform X1 [KO:K03845] [EC:2.4.1.258]
103149650  [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
103150098  [KO:K09661] [EC:2.4.1.-]
103150232  [KO:K13748] [EC:2.4.1.201 2.4.1.145]
103150462  ddost; dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit [KO:K12670]
103151304  [KO:K00721] [EC:2.4.1.83]
103151460  dolk; dolichol kinase [KO:K00902] [EC:2.7.1.108]
103151469  dolpp1; dolichyldiphosphatase 1 [KO:K07252] [EC:3.6.1.43]
103151472  [KO:K07252] [EC:3.6.1.43]
103152097  [KO:K00744] [EC:2.4.1.155]
103152143  man1a2; mannosyl-oligosaccharide 1,2-alpha-mannosidase IB [KO:K01230] [EC:3.2.1.113]
103152699  man1a1; mannosyl-oligosaccharide 1,2-alpha-mannosidase IA [KO:K01230] [EC:3.2.1.113]
103153313  [KO:K09661] [EC:2.4.1.-]
103153950  dpm2; dolichol phosphate-mannose biosynthesis regulatory protein [KO:K09658]
103154658  mgat1; alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [KO:K00726] [EC:2.4.1.101]
103155030  alg14; UDP-N-acetylglucosamine transferase subunit ALG14 homolog isoform X1 [KO:K07441] [EC:2.4.1.141]
103155289  [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
103155536  mgat2; alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [KO:K00736] [EC:2.4.1.143]
103155541  [KO:K23741]
103155884  alg10; dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase [KO:K03850] [EC:2.4.1.256]
103155973  b4galt1; beta-1,4-galactosyltransferase 1 [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
103156068  mgat3; beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase isoform X1 [KO:K00737] [EC:2.4.1.144]
103156110  [KO:K00721] [EC:2.4.1.83]
103156196  [KO:K11170] [EC:1.1.1.441]
103156197  [KO:K11170] [EC:1.1.1.441]
103156459  [KO:K03844] [EC:2.4.1.131]
Compound
C00096  GDP-mannose
C00110  Dolichyl phosphate
C00381  Dolichol
C00621  Dolichyl diphosphate
C01246  Dolichyl beta-D-glucosyl phosphate
C03021  Protein asparagine
C03862  Dolichyl phosphate D-mannose
C06081  Polyprenol
C22974  ditrans,polycis-Polyprenal
C22975  Dolichal
G00001  N-Acetyl-D-glucosaminyldiphosphodolichol
G00002  N,N'-Chitobiosyldiphosphodolichol
G00003  
G00004  
G00005  
G00006  
G00007  
G00008  
G00009  
G00010  
G00011  
G00012  
G00013  
G00014  
G00015  
G00016  Core fucose
G00017  
G00018  DS 3
G00019  
G00020  
G00021  
G00022  
G00171  
G10526  
G10595  
G10596  
G10597  
G10598  
G10599  
G10694  
Reference
PMID:9111134
  Authors
Schutzbach JS.
  Title
The role of the lipid matrix in the biosynthesis of dolichyl-linked oligosaccharides.
  Journal
Glycoconj J 14:175-82 (1997)
DOI:10.1023/A:1018533620002
Reference
  Authors
Oriol R, Martinez-Duncker I, Chantret I, Mollicone R, Codogno P.
  Title
Common origin and evolution of glycosyltransferases using Dol-P-monosaccharides as donor substrate.
  Journal
Mol Biol Evol 19:1451-63 (2002)
DOI:10.1093/oxfordjournals.molbev.a004208
Reference
  Authors
Thiel C, Schwarz M, Peng J, Grzmil M, Hasilik M, Braulke T, Kohlschutter A, von Figura K, Lehle L, Korner C.
  Title
A new type of congenital disorders of glycosylation (CDG-Ii) provides new insights into the early steps of dolichol-linked oligosaccharide biosynthesis.
  Journal
J Biol Chem 278:22498-505 (2003)
DOI:10.1074/jbc.M302850200
Reference
  Authors
Cipollo JF, Trimble RB, Chi JH, Yan Q, Dean N.
  Title
The yeast ALG11 gene specifies addition of the terminal alpha 1,2-Man to the Man5GlcNAc2-PP-dolichol N-glycosylation intermediate formed on the cytosolic side of the endoplasmic reticulum.
  Journal
J Biol Chem 276:21828-40 (2001)
DOI:10.1074/jbc.M010896200
Reference
  Authors
Frank CG, Aebi M.
  Title
ALG9 mannosyltransferase is involved in two different steps of lipid-linked oligosaccharide biosynthesis.
  Journal
Glycobiology 15:1156-63 (2005)
DOI:10.1093/glycob/cwj002
Reference
  Authors
O'Reilly MK, Zhang G, Imperiali B.
  Title
In vitro evidence for the dual function of Alg2 and Alg11: essential mannosyltransferases in N-linked glycoprotein biosynthesis.
  Journal
Biochemistry 45:9593-603 (2006)
DOI:10.1021/bi060878o
Related
pathway
pfor00051  Fructose and mannose metabolism
pfor00511  Other glycan degradation
pfor00513  Various types of N-glycan biosynthesis
pfor00515  Mannose type O-glycan biosynthesis
pfor00520  Amino sugar and nucleotide sugar metabolism
pfor00533  Glycosaminoglycan biosynthesis - keratan sulfate
pfor00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
pfor00900  Terpenoid backbone biosynthesis
KO pathway
ko00510   

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