KEGG   PATHWAY: ppam04120
Entry
ppam04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Pteronotus mesoamericanus (Parnell's mustached bat)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
ppam04120  Ubiquitin mediated proteolysis
ppam04120

Other DBs
GO: 0016567
Organism
Pteronotus mesoamericanus (Parnell's mustached bat) [GN:ppam]
Gene
129061235  HERC2; E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
129061246  UBE3A; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
129061548  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
129061726  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
129061817  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
129062031  ANAPC10; anaphase-promoting complex subunit 10 [KO:K03357]
129062133  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
129062163  PIAS3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
129062605  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 [KO:K04553] [EC:2.3.2.23]
129062662  DDB1; DNA damage-binding protein 1 [KO:K10610]
129062720  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
129063290  CUL1; cullin-1 [KO:K03347]
129063411  UBE2H; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
129064051  PML; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
129064148  PIAS1; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
129064185  HERC1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
129064222  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
129064336  [KO:K02927]
129064591  HUWE1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
129064754  CUL4A; cullin-4A isoform X1 [KO:K10609]
129064767  CDC16; cell division cycle protein 16 homolog [KO:K03353]
129065235  UBA1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
129065320  [KO:K06689] [EC:2.3.2.23]
129065325  [KO:K06689] [EC:2.3.2.23]
129065346  [KO:K04552] [EC:2.3.2.23]
129065379  [KO:K06689] [EC:2.3.2.23]
129065380  [KO:K06689] [EC:2.3.2.23]
129065381  [KO:K06689] [EC:2.3.2.23]
129065382  [KO:K06689] [EC:2.3.2.23]
129065383  [KO:K06689] [EC:2.3.2.23]
129065384  [KO:K06689] [EC:2.3.2.23]
129065421  CUL4B; cullin-4B isoform X1 [KO:K10609]
129065542  UBA6; ubiquitin-like modifier-activating enzyme 6 isoform X1 [KO:K10699] [EC:6.2.1.45]
129065755  [KO:K10688] [EC:2.3.2.23 2.3.2.25]
129066294  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
129066481  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
129066482  BIRC6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
129066636  UBE2D2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
129066660  CDC23; cell division cycle protein 23 homolog isoform X1 [KO:K03355]
129066681  UBE2B; ubiquitin-conjugating enzyme E2 B isoform X1 [KO:K10574] [EC:2.3.2.23]
129066684  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
129066710  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
129066831  [KO:K02977]
129067046  CUL7; cullin-7 isoform X1 [KO:K10613]
129067544  [KO:K02977]
129068197  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
129068585  SYVN1; E3 ubiquitin-protein ligase synoviolin isoform X1 [KO:K10601] [EC:2.3.2.27]
129068774  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
129068786  UBB; polyubiquitin-B [KO:K04551]
129068939  UBE2D4; ubiquitin-conjugating enzyme E2 D4 [KO:K06689] [EC:2.3.2.23]
129069368  CDC20; cell division cycle protein 20 homolog [KO:K03363]
129069454  [KO:K02977]
129069878  UBE2U; ubiquitin-conjugating enzyme E2 U [KO:K10584] [EC:2.3.2.23]
129069902  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
129069946  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
129069962  RHOBTB1; rho-related BTB domain-containing protein 1 [KO:K07868]
129069974  UBE2D1; ubiquitin-conjugating enzyme E2 D1 [KO:K06689] [EC:2.3.2.23]
129070217  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
129070661  UBE2C; ubiquitin-conjugating enzyme E2 C isoform X1 [KO:K06688] [EC:2.3.2.23]
129070759  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
129070814  UBOX5; RING finger protein 37 [KO:K10600]
129071209  [KO:K06689] [EC:2.3.2.23]
129071299  [KO:K02927]
129071337  [KO:K10577]
129071490  UBE3C; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
129071580  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
129071974  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
129072019  [KO:K10580] [EC:2.3.2.23]
129072038  FANCL; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
129072049  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
129072136  ANAPC1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
129072373  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
129072527  CDC34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
129072716  ANAPC15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
129073352  XIAP; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
129073692  CBLB; E3 ubiquitin-protein ligase CBL-B [KO:K22517] [EC:2.3.2.27]
129073873  AIRE; autoimmune regulator [KO:K10603]
129073897  DET1; DET1 homolog [KO:K10571]
129073953  [KO:K04552] [EC:2.3.2.23]
129074300  FZR1; fizzy-related protein homolog [KO:K03364]
129074547  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
129074564  ERCC8; DNA excision repair protein ERCC-8 [KO:K10570]
129074572  [KO:K06689] [EC:2.3.2.23]
129074851  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
129075016  RHOBTB2; rho-related BTB domain-containing protein 2 [KO:K07868]
129075092  UBE2G2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
129075228  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 [KO:K05630] [EC:2.3.2.26]
129075535  [KO:K02927]
129075598  FBXO2; F-box only protein 2 [KO:K10099]
129075669  UBE4B; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
129075724  [KO:K05633] [EC:2.3.2.26]
129075868  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
129075949  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
129076116  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
129076125  KLHL13; kelch-like protein 13 [KO:K10447]
129076160  [KO:K02927]
129076591  [KO:K03094]
129076768  [KO:K02927]
129076894  MID1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
129077129  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
129077563  ANAPC4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
129077588  UBE2K; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
129077769  CUL2; cullin-2 [KO:K03870]
129077850  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
129078153  PIAS4; E3 SUMO-protein ligase PIAS4 isoform X1 [KO:K16065] [EC:2.3.2.27]
129078206  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
129078357  KLHL9; kelch-like protein 9 [KO:K10447]
129078403  [KO:K10580] [EC:2.3.2.23]
129078699  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
129078745  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
129078846  [KO:K04552] [EC:2.3.2.23]
129079015  FBXO4; F-box only protein 4 [KO:K10291]
129079051  SKP2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
129079145  ANAPC2; LOW QUALITY PROTEIN: anaphase-promoting complex subunit 2 [KO:K03349]
129079274  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
129079320  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
129079321  [KO:K10573] [EC:2.3.2.23]
129079334  CDC26; anaphase-promoting complex subunit CDC26 isoform X1 [KO:K03359]
129079789  [KO:K12456]
129079903  [KO:K04552] [EC:2.3.2.23]
129080015  [KO:K10577]
129080117  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
129080186  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
129080287  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
129080307  CUL3; cullin-3 isoform X1 [KO:K03869]
129080456  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
129081242  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
129081434  DDB2; DNA damage-binding protein 2 [KO:K10140]
129082016  COP1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
129082508  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
129082740  CBLC; E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
129082883  SAE1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
129082977  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
129083093  [KO:K10577]
129083177  UBA2; SUMO-activating enzyme subunit 2 isoform X1 [KO:K10685] [EC:6.2.1.45]
129083397  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
129083560  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
129083622  ELOB; elongin-B isoform X1 [KO:K03873]
129083661  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
129084153  [KO:K06688] [EC:2.3.2.23]
129084255  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
129084707  [KO:K02927]
129085282  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
129085319  UBE2D3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
129085359  HERC3; probable E3 ubiquitin-protein ligase HERC3 [KO:K10614] [EC:2.3.2.26]
129085651  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
129085864  BIRC3; baculoviral IAP repeat-containing protein 3 [KO:K16060]
129085930  UBE4A; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
129085961  CBL; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
129085965  CUL5; cullin-5 [KO:K10612]
129085986  BIRC2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
129086216  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 isoform X1 [KO:K10598] [EC:5.2.1.8]
129086333  UBE2L3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
129086506  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
129086604  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X1 [KO:K10581] [EC:2.3.2.24]
129086674  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
129086900  BRCA1; LOW QUALITY PROTEIN: breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
129087151  UBC; LOW QUALITY PROTEIN: polyubiquitin-C [KO:K08770]
129087274  ANAPC5; anaphase-promoting complex subunit 5 [KO:K03352]
129087288  ANAPC7; anaphase-promoting complex subunit 7 [KO:K03354]
129087365  UBE3B; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
129087375  FBXW8; F-box/WD repeat-containing protein 8 [KO:K10264]
129087803  UBA7; ubiquitin-like modifier-activating enzyme 7 [KO:K10698] [EC:6.2.1.45]
129087991  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
129088062  [KO:K02927]
129088090  UBE2E2; ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
129088211  [KO:K02977]
129088217  UBE2E1; ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
129088228  PRKN; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
129088286  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
129088315  UBE2W; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
129088329  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
129088380  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
129088403  VHL; von Hippel-Lindau disease tumor suppressor [KO:K03871]
129088420  [KO:K06689] [EC:2.3.2.23]
129088441  ELOC; elongin-C [KO:K03872]
129088474  [KO:K10580] [EC:2.3.2.23]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
ppam03050  Proteasome
KO pathway
ko04120   

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