KEGG   PATHWAY: tang03420
Entry
tang03420                   Pathway                                
Name
Nucleotide excision repair - Typha angustifolia (narrow-leaf cattail)
Description
Nucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the NER pathway are linked to at least three diseases: xeroderma pigmentosum (XP), Cockayne syndrome (CS), and trichothiodystrophy (TTD). The repair of damaged DNA involves at least 30 polypeptides within two different sub-pathways of NER known as transcription-coupled repair (TCR-NER) and global genome repair (GGR-NER). TCR refers to the expedited repair of lesions located in the actively transcribed strand of genes by RNA polymerase II (RNAP II). In GGR-NER the first step of damage recognition involves XPC-hHR23B complex together with XPE complex (in prokaryotes, uvrAB complex). The following steps of GGR-NER and TCR-NER are similar.
Class
Genetic Information Processing; Replication and repair
Pathway map
tang03420  Nucleotide excision repair
tang03420

Other DBs
GO: 0006289
Organism
Typha angustifolia (narrow-leaf cattail) [GN:tang]
Gene
140758144  [KO:K03007]
140758425  [KO:K02327] [EC:2.7.7.7]
140758527  [KO:K02324] [EC:2.7.7.7]
140758915  [KO:K10756]
140758921  [KO:K10841]
140758956  [KO:K10609]
140760258  [KO:K07466]
140760543  [KO:K10839]
140760641  [KO:K10756]
140761601  [KO:K10844] [EC:5.6.2.3]
140761790  [KO:K03013]
140762112  [KO:K03505]
140762205  [KO:K03010] [EC:2.7.7.6]
140762207  [KO:K10755]
140762840  [KO:K03016]
140762847  [KO:K03012]
140763351  [KO:K03142]
140763498  [KO:K10739]
140763683  [KO:K10756]
140763703  [KO:K03012]
140764660  [KO:K23720]
140764741  [KO:K02202] [EC:2.7.11.22 2.7.11.23]
140764773  [KO:K10846]
140765288  [KO:K10842]
140765380  [KO:K03009]
140765514  [KO:K04802]
140765692  [KO:K03868] [EC:2.3.2.32]
140765841  [KO:K10845]
140766183  [KO:K03504]
140766469  [KO:K03013]
140766722  [KO:K02328]
140766739  [KO:K10839]
140766777  [KO:K03505]
140767008  [KO:K03141]
140767250  [KO:K03015]
140767606  [KO:K03017]
140767735  [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
140767741  [KO:K10848] [EC:3.1.-.-]
140767751  [KO:K10849]
140767894  [KO:K03014]
140768233  [KO:K03868] [EC:2.3.2.32]
140768856  [KO:K03006] [EC:2.7.7.6]
140769336  [KO:K02326] [EC:2.7.7.7]
140769347  [KO:K10570]
140769565  [KO:K06634]
140769611  [KO:K10843] [EC:5.6.2.4]
140769766  [KO:K10839]
140770086  [KO:K03144]
140770104  [KO:K03008]
140770408  [KO:K04802]
140770704  [KO:K03017]
140770911  [KO:K10739]
140771808  [KO:K10610]
140771925  [KO:K03011]
140773036  [KO:K10754]
140774178  [KO:K10839]
140774284  [KO:K03017]
140775429  [KO:K04802]
140775539  [KO:K03013]
140776200  [KO:K03017]
140776775  [KO:K10140]
140777030  [KO:K02325] [EC:2.7.7.7]
140777242  [KO:K07466]
140777326  [KO:K03143]
140777406  [KO:K02335] [EC:2.7.7.7]
140777813  [KO:K10838]
140779377  [KO:K07466]
140779431  [KO:K10839]
140779625  [KO:K03868] [EC:2.3.2.32]
140779668  [KO:K10740]
140780234  [KO:K10755]
Reference
  Authors
Sugasawa K.
  Title
[Molecular mechanism of mammalian nucleotide excision repair]
  Journal
Tanpakushitsu Kakusan Koso 46:893-901 (2001)
Reference
  Authors
Nakatsu Y.
  Title
[Transcription-coupled repair and Cockayne syndrome]
  Journal
Tanpakushitsu Kakusan Koso 46:908-15 (2001)
Reference
  Authors
Nakagawa N, Masui R, Kuramitsu S.
  Title
[Structure and function of DNA repair enzyme UvrB from Thermus thermophilus HB8]
  Journal
Tanpakushitsu Kakusan Koso 46:968-75 (2001)
Reference
  Authors
Kraemer KH, Patronas NJ, Schiffmann R, Brooks BP, Tamura D, DiGiovanna JJ.
  Title
Xeroderma pigmentosum, trichothiodystrophy and Cockayne syndrome: a complex genotype-phenotype relationship.
  Journal
Neuroscience 145:1388-96 (2007)
DOI:10.1016/j.neuroscience.2006.12.020
Reference
  Authors
Saldivar JS, Wu X, Follen M, Gershenson D.
  Title
Nucleotide excision repair pathway review I: implications in ovarian cancer and platinum sensitivity.
  Journal
Gynecol Oncol 107:S56-71 (2007)
DOI:10.1016/j.ygyno.2007.07.043
Reference
  Authors
Sugasawa K.
  Title
[DNA repair pathways involving Cul4A ubiquitin ligases]
  Journal
Tanpakushitsu Kakusan Koso 51:1339-44 (2006)
Reference
  Authors
Ito S, Ando D, Tanaka K.
  Title
[Cross-talk between DNA repair and transcription: molecular mechanism and disorders]
  Journal
Tanpakushitsu Kakusan Koso 52:1823-31 (2007)
Related
pathway
tang03020  RNA polymerase
tang04120  Ubiquitin mediated proteolysis
KO pathway
ko03420   

DBGET integrated database retrieval system