KEGG   PATHWAY: tdc03420
Entry
tdc03420                    Pathway                                
Name
Nucleotide excision repair - Triticum dicoccoides (wild emmer wheat)
Description
Nucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the NER pathway are linked to at least three diseases: xeroderma pigmentosum (XP), Cockayne syndrome (CS), and trichothiodystrophy (TTD). The repair of damaged DNA involves at least 30 polypeptides within two different sub-pathways of NER known as transcription-coupled repair (TCR-NER) and global genome repair (GGR-NER). TCR refers to the expedited repair of lesions located in the actively transcribed strand of genes by RNA polymerase II (RNAP II). In GGR-NER the first step of damage recognition involves XPC-hHR23B complex together with XPE complex (in prokaryotes, uvrAB complex). The following steps of GGR-NER and TCR-NER are similar.
Class
Genetic Information Processing; Replication and repair
Pathway map
tdc03420  Nucleotide excision repair
tdc03420

Other DBs
GO: 0006289
Organism
Triticum dicoccoides (wild emmer wheat) [GN:tdc]
Gene
119266566  [KO:K03868] [EC:2.3.2.32]
119266858  [KO:K10140]
119266939  [KO:K02324] [EC:2.7.7.7]
119267022  [KO:K10841]
119267304  [KO:K02325] [EC:2.7.7.7]
119267489  [KO:K03504]
119267835  [KO:K10740]
119267905  [KO:K10740]
119268266  [KO:K10610]
119268761  [KO:K10843] [EC:5.6.2.4]
119269320  [KO:K03013]
119269402  [KO:K03007]
119269652  [KO:K10570]
119270017  [KO:K03141]
119270334  [KO:K23720]
119270341  [KO:K23720]
119270741  [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
119271850  [KO:K10849]
119274241  [KO:K03868] [EC:2.3.2.32]
119274608  [KO:K10140]
119274834  [KO:K10841]
119275171  [KO:K02325] [EC:2.7.7.7]
119275715  [KO:K10740]
119275770  [KO:K10740]
119276651  [KO:K04802]
119276652  [KO:K04802]
119276705  [KO:K10843] [EC:5.6.2.4]
119277050  [KO:K03009]
119277322  [KO:K03013]
119277398  [KO:K03007]
119277668  [KO:K10570]
119278042  [KO:K03141]
119278066  [KO:K02202] [EC:2.7.11.22 2.7.11.23]
119278639  [KO:K03015]
119279430  [KO:K03504]
119279431  [KO:K03504]
119280039  [KO:K23720]
119284843  [KO:K10846]
119284924  [KO:K07466]
119286189  [KO:K03013]
119286491  [KO:K02327] [EC:2.7.7.7]
119286733  [KO:K06634]
119287186  [KO:K02326] [EC:2.7.7.7]
119287379  [KO:K03505]
119289626  [KO:K10756]
119291212  [KO:K07466]
119291306  [KO:K10846]
119291836  [KO:K02328]
119292188  [KO:K04802]
119292238  [KO:K03017]
119292267  [KO:K10848] [EC:3.1.-.-]
119293085  [KO:K10756]
119293629  [KO:K10739]
119294984  [KO:K10610]
119295003  [KO:K06634]
119295286  [KO:K02327] [EC:2.7.7.7]
119295623  [KO:K03013]
119297882  [KO:K10739]
119298596  [KO:K10756]
119300079  [KO:K03017]
119300767  [KO:K10755]
119300794  [KO:K03007]
119301028  [KO:K02326] [EC:2.7.7.7]
119301075  [KO:K03011]
119301251  [KO:K10756]
119301510  [KO:K10839]
119302052  [KO:K03008]
119302436  [KO:K03013]
119302497  [KO:K03505]
119303015  [KO:K03010] [EC:2.7.7.6]
119303483  [KO:K10756]
119303922  [KO:K02328]
119304300  [KO:K03017]
119304336  [KO:K10848] [EC:3.1.-.-]
119307822  [KO:K03017]
119308090  [KO:K03007]
119308137  [KO:K10755]
119308315  [KO:K03013]
119308600  [KO:K03011]
119309356  [KO:K10839]
119310850  [KO:K03008]
119311181  [KO:K03505]
119311688  [KO:K03010] [EC:2.7.7.6]
119312110  [KO:K10609]
119312140  [KO:K10756]
119314823  [KO:K03143]
119316278  [KO:K10839]
119316516  [KO:K10845]
119317151  [KO:K10845]
119317205  [KO:K10739]
119317601  [KO:K03868] [EC:2.3.2.32]
119317999  [KO:K10756]
119318107  [KO:K07466]
119318411  [KO:K04802]
119318685  [KO:K10739]
119318770  [KO:K03012]
119319615  [KO:K03012]
119322095  [KO:K03143]
119322451  [KO:K10839]
119323253  [KO:K07466]
119323775  [KO:K03868] [EC:2.3.2.32]
119324059  [KO:K03012]
119324153  [KO:K07466]
119324184  [KO:K04802]
119324267  [KO:K10756]
119324719  [KO:K10844] [EC:5.6.2.3]
119324942  [KO:K10739]
119325553  [KO:K10739]
119325872  [KO:K03012]
119327650  [KO:K10739]
119328001  [KO:K03008]
119328289  [KO:K10839]
119328571  [KO:K03006] [EC:2.7.7.6]
119329407  [KO:K02335] [EC:2.7.7.7]
119329882  [KO:K10838]
119330337  [KO:K03006] [EC:2.7.7.6]
119331437  [KO:K10739]
119331765  [KO:K10754]
119331850  [KO:K02324] [EC:2.7.7.7]
119332565  [KO:K10842]
119333728  [KO:K03016]
119334522  [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
119335675  [KO:K03006] [EC:2.7.7.6]
119335779  [KO:K10839]
119335964  [KO:K03006] [EC:2.7.7.6]
119336381  [KO:K10849]
119337374  [KO:K10756]
119338366  [KO:K10838]
119340097  [KO:K10842]
119341113  [KO:K03009]
119341189  [KO:K10754]
119341281  [KO:K10739]
119341490  [KO:K03011]
119341901  [KO:K02202] [EC:2.7.11.22 2.7.11.23]
119342706  [KO:K03015]
119343461  [KO:K10839]
119343527  [KO:K10740]
119343529  [KO:K10740]
119343744  [KO:K10740]
119343913  [KO:K23720]
119347896  [KO:K10739]
119349040  [KO:K03505]
119349833  [KO:K10610]
119352072  [KO:K03505]
119353323  [KO:K03016]
119353794  [KO:K03014]
119353799  [KO:K03017]
119355541  [KO:K03013]
119355542  [KO:K03013]
119355702  [KO:K04802]
119355704  [KO:K03142]
119355839  [KO:K10739]
119356035  [KO:K10755]
119356916  [KO:K02335] [EC:2.7.7.7]
119357145  [KO:K03144]
119357318  [KO:K03006] [EC:2.7.7.6]
119358119  [KO:K10756]
119359151  [KO:K10845]
119359554  [KO:K07466]
119359640  [KO:K03013]
119361117  [KO:K10756]
119362461  [KO:K03016]
119362978  [KO:K03014]
119362985  [KO:K03017]
119364310  [KO:K03009]
119364499  [KO:K07466]
119364694  [KO:K03013]
119364695  [KO:K03013]
119364715  [KO:K10844] [EC:5.6.2.3]
119364860  [KO:K04802]
119364862  [KO:K03142]
119365173  [KO:K10755]
119365865  [KO:K03008]
119366166  [KO:K02335] [EC:2.7.7.7]
119366428  [KO:K03144]
119366631  [KO:K03006] [EC:2.7.7.6]
Reference
  Authors
Sugasawa K.
  Title
[Molecular mechanism of mammalian nucleotide excision repair]
  Journal
Tanpakushitsu Kakusan Koso 46:893-901 (2001)
Reference
  Authors
Nakatsu Y.
  Title
[Transcription-coupled repair and Cockayne syndrome]
  Journal
Tanpakushitsu Kakusan Koso 46:908-15 (2001)
Reference
  Authors
Nakagawa N, Masui R, Kuramitsu S.
  Title
[Structure and function of DNA repair enzyme UvrB from Thermus thermophilus HB8]
  Journal
Tanpakushitsu Kakusan Koso 46:968-75 (2001)
Reference
  Authors
Kraemer KH, Patronas NJ, Schiffmann R, Brooks BP, Tamura D, DiGiovanna JJ.
  Title
Xeroderma pigmentosum, trichothiodystrophy and Cockayne syndrome: a complex genotype-phenotype relationship.
  Journal
Neuroscience 145:1388-96 (2007)
DOI:10.1016/j.neuroscience.2006.12.020
Reference
  Authors
Saldivar JS, Wu X, Follen M, Gershenson D.
  Title
Nucleotide excision repair pathway review I: implications in ovarian cancer and platinum sensitivity.
  Journal
Gynecol Oncol 107:S56-71 (2007)
DOI:10.1016/j.ygyno.2007.07.043
Reference
  Authors
Sugasawa K.
  Title
[DNA repair pathways involving Cul4A ubiquitin ligases]
  Journal
Tanpakushitsu Kakusan Koso 51:1339-44 (2006)
Reference
  Authors
Ito S, Ando D, Tanaka K.
  Title
[Cross-talk between DNA repair and transcription: molecular mechanism and disorders]
  Journal
Tanpakushitsu Kakusan Koso 52:1823-31 (2007)
Related
pathway
tdc03020  RNA polymerase
tdc04120  Ubiquitin mediated proteolysis
KO pathway
ko03420   

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