| | Disease name | Disease category |
| SMA1/2/3/4 | H00455 | Spinal muscular atrophy | Neurodegenerative disease |
| SMA3 | H00455 | Spinal muscular atrophy | Neurodegenerative disease |
| NEDMCR | H02986 | Neurodevelopmental disorder with microcephaly, cataracts, and renal abnormalities | Congenital malformation |
| NEDCAM | H02987 | Neurodevelopmental disorder with cerebellar atrophy and motor dysfunction | Congenital malformation |
| CCMS | H01843 | Cerebrocostomandibular syndrome | Congenital malformation |
| HYPT11 | H00786 | Hypotrichosis | Skin disease |
| PCH7 | H00897 | Pontocerebellar hypoplasia | Congenital malformation |
| LGMDR29 | H00593 | Limb-girdle muscular dystrophy | Nervous system disease |
| ALS6/ETM4 | H00058 | Amyotrophic lateral sclerosis (ALS) | Neurodegenerative disease |
| H01577 | Essential tremor | Nervous system disease |
| ALS20/MPD3/IBMPFD3 | H00058 | Amyotrophic lateral sclerosis (ALS) | Neurodegenerative disease |
| H00594 | Distal myopathy | Nervous system disease |
| H02031 | Inclusion body myopathy with Paget disease of bone and frontotemporal dementia | Nervous system disease |
| LGMDD3 | H00593 | Limb-girdle muscular dystrophy | Nervous system disease |
| MRD74 | H00773 | Autosomal dominant intellectual developmental disorder | Mental and behavioural disorder |
| ORMD2/IBMPFD2 | H00704 | Oculopharyngeal muscular dystrophy | Nervous system disease |
| H02031 | Inclusion body myopathy with Paget disease of bone and frontotemporal dementia | Nervous system disease |
| NEDCDS | H03017 | Neurodevelopmental disorder with craniofacial dysmorphism and skeletal defects | Congenital malformation |
| MRXSB | H00658 | X-linked syndromic intellectual developmental disorder | Mental and behavioural disorder |
| AUKS | H01930 | Au-Kline syndrome | Congenital malformation |
| NEDDFSB | H03018 | Neurodevelopmental disorder with dysmorphic facies and skeletal and brain abnormalities | Congenital malformation |
| DEE54 | H00606 | Early infantile epileptic encephalopathy | Nervous system disease |
| MRXSSH/MRXSG | H00658 | X-linked syndromic intellectual developmental disorder | Mental and behavioural disorder |
| DEVDFB | H02993 | Developmental delay, dysmorphic facies, and brain anomalies | Congenital malformation |
| VRJS | H01800 | Verheij syndrome | Congenital malformation |
| CFM1 | H02673 | Craniofacial microsomia | Congenital malformation |
| AFD1 | H01376 | Acrofacial dysostosis | Congenital malformation |
| RENU | H02804 | ReNU syndrome | Congenital malformation |
| LDCA | H02983 | Leukodystrophy and cerebellar atrophy | Congenital malformation |
| RP18 | H00527 | Retinitis pigmentosa | Nervous system disease |
| RP9 | H00527 | Retinitis pigmentosa | Nervous system disease |
| RP70 | H00527 | Retinitis pigmentosa | Nervous system disease |
| RP11 | H00527 | Retinitis pigmentosa | Nervous system disease |
| NEDSJL | H02997 | Neurodevelopmental disorder with seizures and joint laxity | Congenital malformation |
| MFDM | H01838 | Mandibulofacial dysostosis with microcephaly | Congenital malformation |
| RP60 | H00527 | Retinitis pigmentosa | Nervous system disease |
| RP13 | H00527 | Retinitis pigmentosa | Nervous system disease |
| RP33 | H00527 | Retinitis pigmentosa | Nervous system disease |
| BMKS | H01839 | Burn-McKeown syndrome | Congenital malformation |
| NEDHFDB | H02998 | Neurodevelopmental disorder with hypotonia, feeding difficulties, facial dysmorphism, and brain abnormalities | Congenital malformation |
| NMOAS | H02745 | Neuromuscular oculoauditory syndrome | Congenital malformation |
| TTD5 | H00866 | Trichothiodystrophy | Skin disease |
| RPSKA | H02422 | Retinitis pigmentosa with skeletal anomalies | Congenital malformation |
| IMD99 | H02526 | Disorders of adaptive immunity | Immune system disease |
| RENS1 | H01913 | Renpenning syndrome | Congenital malformation |
| VCTERL | H01195 | VACTERL/VATER association | Congenital malformation |
| PCH14 | H00897 | Pontocerebellar hypoplasia | Congenital malformation |
| ACHPS | H02912 | Achalasia-progeroid syndrome | Congenital malformation |
| NEDHCS | H03019 | Neurodevelopmental disorder with hypotonia, craniofacial abnormalities, and seizures | Congenital malformation |
| MRD72 | H00773 | Autosomal dominant intellectual developmental disorder | Mental and behavioural disorder |
| RCPS | H02503 | Richieri-Costa-Pereira syndrome | Congenital malformation |
| TAR | H01847 | Thrombocytopenia-absent radius syndrome | Congenital malformation |
| RP84 | H00527 | Retinitis pigmentosa | Nervous system disease |
| PCH15 | H00897 | Pontocerebellar hypoplasia | Congenital malformation |
| MRXSHD | H00658 | X-linked syndromic intellectual developmental disorder | Mental and behavioural disorder |
| DFNA86 | H00604 | Deafness, autosomal dominant | Nervous system disease |
| XLID12/AMC7 | H00480 | X-linked intellectual developmental disorder | Mental and behavioural disorder |
| H02299 | Arthrogryposis multiplex congenita | Congenital malformation |
| BBIS | H02253 | Beaulieu-Boycott-Innes syndrome | Congenital malformation |
| OPMD1 | H00704 | Oculopharyngeal muscular dystrophy | Nervous system disease |