KEGG   PATHWAY: ajm04120
Entry
ajm04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Artibeus jamaicensis (Jamaican fruit-eating bat)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
ajm04120  Ubiquitin mediated proteolysis
ajm04120

Other DBs
GO: 0016567
Organism
Artibeus jamaicensis (Jamaican fruit-eating bat) [GN:ajm]
Gene
119043181  polyubiquitin-B-like [KO:K04551]
119064362  UBB; polyubiquitin-B [KO:K04551]
119055128  polyubiquitin-like [KO:K08770]
119049493  polyubiquitin 11-like [KO:K08770]
119049494  polyubiquitin 11 [KO:K08770]
119039029  ubiquitin-60S ribosomal protein L40-like [KO:K02927]
119041113  LOW QUALITY PROTEIN: ubiquitin-60S ribosomal protein L40-like [KO:K02927]
119046848  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
119056965  ubiquitin-like [KO:K02927]
119034676  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
119056912  ubiquitin-40S ribosomal protein S27a-like [KO:K02977]
119058474  ubiquitin-like [KO:K02977]
119060235  UBA1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
119056626  SAE1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
119043167  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
119038290  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
119036614  UBA7; ubiquitin-like modifier-activating enzyme 7 [KO:K10698] [EC:6.2.1.45]
119052679  UBA6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
119059928  ubiquitin-conjugating enzyme E2 A-like [KO:K10573] [EC:2.3.2.23]
119062992  UBE2A; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
119053355  UBE2B; ubiquitin-conjugating enzyme E2 B isoform X1 [KO:K10574] [EC:2.3.2.23]
119063373  UBE2C; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
119063904  ubiquitin-conjugating enzyme E2 C-like [KO:K06688] [EC:2.3.2.23]
119045278  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
119035972  ubiquitin-conjugating enzyme E2 D2-like isoform X1 [KO:K06689] [EC:2.3.2.23]
119052851  UBE2D4; ubiquitin-conjugating enzyme E2 D4 isoform X1 [KO:K06689] [EC:2.3.2.23]
119046332  ubiquitin-conjugating enzyme E2 D3-like [KO:K06689] [EC:2.3.2.23]
119053816  ubiquitin-conjugating enzyme E2-17 kDa-like [KO:K06689] [EC:2.3.2.23]
119062313  ubiquitin-conjugating enzyme E2 D3-like [KO:K06689] [EC:2.3.2.23]
119055467  ubiquitin-conjugating enzyme E2 D3-like [KO:K06689] [EC:2.3.2.23]
119064578  ubiquitin-conjugating enzyme E2-17 kDa-like [KO:K06689] [EC:2.3.2.23]
119064579  ubiquitin-conjugating enzyme E2 D3-like [KO:K06689] [EC:2.3.2.23]
119064617  ubiquitin-conjugating enzyme E2 D3-like [KO:K06689] [EC:2.3.2.23]
119050155  ubiquitin-conjugating enzyme E2-17 kDa-like [KO:K06689] [EC:2.3.2.23]
119065074  ubiquitin-conjugating enzyme E2-17 kDa-like [KO:K06689] [EC:2.3.2.23]
119065075  ubiquitin-conjugating enzyme E2-17 kDa [KO:K06689] [EC:2.3.2.23]
119065773  UBE2D3; ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
119050959  ubiquitin-conjugating enzyme E2-17 kDa-like [KO:K06689] [EC:2.3.2.23]
119050994  UBE2D2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
119037756  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
119048330  ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
119048332  UBE2E1; ubiquitin-conjugating enzyme E2 E1 [KO:K20217] [EC:2.3.2.23]
119061023  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
119040166  UBE2G1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
119058763  UBE2G2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
119064245  UBE2H; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
119049508  ubiquitin-conjugating enzyme E2 4-like [KO:K10576] [EC:2.3.2.23]
119058198  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
119038669  UBE2J1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
119055437  ubiquitin-conjugating enzyme E2 J2-like [KO:K04554] [EC:2.3.2.23]
119050527  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
119043884  UBE2K; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
119037041  ubiquitin-conjugating enzyme E2 1-like [KO:K04649] [EC:2.3.2.23]
119038904  UBE2L3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
119042234  ubiquitin-conjugating enzyme E2 L3-like [KO:K04552] [EC:2.3.2.23]
119055240  ubiquitin-conjugating enzyme E2 L3-like [KO:K04552] [EC:2.3.2.23]
119062340  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 [KO:K04553] [EC:2.3.2.23]
119051615  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
119053382  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
119049982  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
119058540  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme [KO:K10581] [EC:2.3.2.24]
119061801  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 isoform X1 [KO:K10582] [EC:2.3.2.23]
119056053  UBE2QL1; ubiquitin-conjugating enzyme E2Q-like protein 1 isoform X1 [KO:K10582] [EC:2.3.2.23]
119057244  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
119044616  CDC34; ubiquitin-conjugating enzyme E2 R1 isoform X1 [KO:K02207] [EC:2.3.2.23]
119053819  UBE2R2; ubiquitin-conjugating enzyme E2 R2 isoform X1 [KO:K02207] [EC:2.3.2.23]
119059969  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
119042505  UBE2U; LOW QUALITY PROTEIN: ubiquitin-conjugating enzyme E2 U [KO:K10584] [EC:2.3.2.23]
119053414  UBE2W; ubiquitin-conjugating enzyme E2 W isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
119052608  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
119050340  BIRC6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
119039843  UBE3A; ubiquitin-protein ligase E3A [KO:K10587] [EC:2.3.2.26]
119057415  UBE3B; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
119039224  UBE3C; ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
119036281  SMURF2; E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
119062973  SMURF1; E3 ubiquitin-protein ligase SMURF1 [KO:K04678] [EC:2.3.2.26]
119063357  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
119046362  WWP1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
119061894  WWP2; NEDD4-like E3 ubiquitin-protein ligase WWP2 [KO:K05630] [EC:2.3.2.26]
119041960  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
119053469  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
119054128  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
119055491  HUWE1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
119040376  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
119056956  HERC1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
119039861  HERC2; E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
119046135  HERC3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
119048699  HERC4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
119050764  UBE4A; ubiquitin conjugation factor E4 A isoform X1 [KO:K10596] [EC:2.3.2.27]
119064075  UBE4B; ubiquitin conjugation factor E4 B [KO:K10597] [EC:2.3.2.27]
119058211  STUB1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
119059166  PPIL2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
119043707  PRPF19; pre-mRNA-processing factor 19 isoform X1 [KO:K10599] [EC:2.3.2.27]
119051169  UBOX5; RING finger protein 37 isoform X1 [KO:K10600]
119052717  MDM2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
119050746  CBL; E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
119058052  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
119034847  CBLC; E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
119034893  PRKN; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
119051564  E3 ubiquitin-protein ligase SINAT5-like [KO:K04506] [EC:2.3.2.27]
119046478  SIAH1; E3 ubiquitin-protein ligase SIAH1 [KO:K04506] [EC:2.3.2.27]
119041301  PML; protein PML [KO:K10054] [EC:2.3.2.-]
119036455  TRAF6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
119039781  MAP3K1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
119049566  COP1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
119052836  RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
119054065  BIRC3; baculoviral IAP repeat-containing protein 3 [KO:K16060]
119054066  BIRC2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
119055846  E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
119055320  BIRC7; LOW QUALITY PROTEIN: baculoviral IAP repeat-containing protein 7 [KO:K16061]
119056943  PIAS1; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
119063627  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
119049416  PIAS3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
119063767  PIAS4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
119050259  SYVN1; E3 ubiquitin-protein ligase synoviolin isoform X1 [KO:K10601] [EC:2.3.2.27]
119058725  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
119058769  autoimmune regulator-like [KO:K10603]
119043849  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
119051686  BRCA1; LOW QUALITY PROTEIN: breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
119047963  FANCL; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
119058356  MID1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
119056325  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
119062661  TRIM37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
119060371  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
119051030  CUL1; cullin-1 [KO:K03347]
119037619  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
119036231  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
119059661  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
119037019  SKP2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
119065912  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
119064117  FBXO2; F-box only protein 2 isoform X1 [KO:K10099]
119044243  FBXO4; F-box only protein 4 [KO:K10291]
119038940  CUL2; cullin-2 [KO:K03870]
119053416  ELOC; elongin-C [KO:K03872]
119058208  ELOB; elongin-B isoform X1 [KO:K03873]
119038335  von Hippel-Lindau disease tumor suppressor [KO:K03871]
119041442  von Hippel-Lindau disease tumor suppressor-like [KO:K03871]
119058834  von Hippel-Lindau disease tumor suppressor-like [KO:K03871]
119044733  CUL3; cullin-3 isoform X1 [KO:K03869]
119055679  KEAP1; kelch-like ECH-associated protein 1 isoform X1 [KO:K10456]
119056304  KLHL9; kelch-like protein 9 [KO:K10447]
119049848  KLHL13; kelch-like protein 13 [KO:K10447]
119045290  RHOBTB1; rho-related BTB domain-containing protein 1 [KO:K07868]
119054676  RHOBTB2; rho-related BTB domain-containing protein 2 [KO:K07868]
119045858  CUL4A; cullin-4A [KO:K10609]
119054243  CUL4B; cullin-4B isoform X1 [KO:K10609]
119043695  DDB1; DNA damage-binding protein 1 [KO:K10610]
119064434  DDB2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
119057184  ERCC8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
119049112  DET1; DET1 homolog isoform X1 [KO:K10571]
119044845  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
119055384  CUL5; cullin-5 [KO:K10612]
119053594  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
119058654  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
119056091  CUL7; cullin-7 isoform X1 [KO:K10613]
119057370  FBXW8; F-box/WD repeat-containing protein 8 isoform X1 [KO:K10264]
119058566  ANAPC11; anaphase-promoting complex subunit 11 [KO:K03358]
119036107  ANAPC2; LOW QUALITY PROTEIN: anaphase-promoting complex subunit 2 [KO:K03349]
119052386  CDC20; cell division cycle protein 20 homolog [KO:K03363]
119063717  FZR1; fizzy-related protein homolog isoform X1 [KO:K03364]
119062739  ANAPC1; anaphase-promoting complex subunit 1 [KO:K03348]
119062609  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
119056917  ANAPC4; anaphase-promoting complex subunit 4 [KO:K03351]
119048799  ANAPC5; anaphase-promoting complex subunit 5 [KO:K03352]
119038487  CDC16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
119048864  ANAPC7; anaphase-promoting complex subunit 7 isoform X1 [KO:K03354]
119051067  CDC23; cell division cycle protein 23 homolog isoform X1 [KO:K03355]
119061722  ANAPC10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
119044925  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
119043546  anaphase-promoting complex subunit 13-like [KO:K12456]
119048272  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
119042142  ANAPC15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
119038108  ANAPC16; anaphase-promoting complex subunit 16 isoform X1 [KO:K25229]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
ajm03050  Proteasome
KO pathway
ko04120   
LinkDB

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