KEGG   PATHWAY: biu04120
Entry
biu04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Bos indicus (zebu cattle)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
biu04120  Ubiquitin mediated proteolysis
biu04120

Other DBs
GO: 0016567
Organism
Bos indicus (zebu cattle) [GN:biu]
Gene
109552996  UBE2D1; ubiquitin-conjugating enzyme E2 D1 isoform X1 [KO:K06689] [EC:2.3.2.23]
109553040  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
109553411  [KO:K20217] [EC:2.3.2.23]
109553440  [KO:K20217] [EC:2.3.2.23]
109553680  ANAPC16; anaphase-promoting complex subunit 16 [KO:K25229]
109553734  RHOBTB1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
109553762  HERC4; LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC4 [KO:K10615] [EC:2.3.2.26]
109554274  DDB1; DNA damage-binding protein 1 [KO:K10610]
109554397  SYVN1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
109554593  PRPF19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
109555039  [KO:K04506] [EC:2.3.2.27]
109555074  HUWE1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
109555087  UBA1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
109555198  MID1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
109555249  CUL4B; cullin-4B [KO:K10609]
109555603  [KO:K03178] [EC:6.2.1.45]
109555834  PIAS3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
109555878  [KO:K16060]
109556404  CDC20; cell division cycle protein 20 homolog [KO:K03363]
109556574  UBE2F; NEDD8-conjugating enzyme UBE2F isoform X1 [KO:K10687] [EC:2.3.2.34]
109556727  UBE2Q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
109556850  UBE2U; ubiquitin-conjugating enzyme E2 U [KO:K10584] [EC:2.3.2.23]
109557622  UBE2H; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
109557757  CUL1; LOW QUALITY PROTEIN: cullin-1 [KO:K03347]
109557822  UBE3C; ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
109558399  MDM2; E3 ubiquitin-protein ligase Mdm2 [KO:K06643] [EC:2.3.2.27]
109558726  [KO:K03872]
109558979  UBE2N; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
109559268  [KO:K04506] [EC:2.3.2.27]
109559651  RNF7; RING-box protein 2 isoform X1 [KO:K10611]
109559850  RBX1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
109560128  ANAPC13; anaphase-promoting complex subunit 13 [KO:K12456]
109560294  UBE2D3; ubiquitin-conjugating enzyme E2 D3 isoform X1 [KO:K06689] [EC:2.3.2.23]
109560341  HERC3; probable E3 ubiquitin-protein ligase HERC3 [KO:K10614] [EC:2.3.2.26]
109560377  ANAPC4; anaphase-promoting complex subunit 4 [KO:K03351]
109560411  UBE2K; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
109560514  UBA6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
109560585  RCHY1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
109560826  UBE2G2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
109561401  UBA52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
109561590  KEAP1; kelch-like ECH-associated protein 1 [KO:K10456]
109561754  PIAS4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
109561770  FZR1; fizzy-related protein homolog isoform X1 [KO:K03364]
109561771  [KO:K03364]
109561960  CDC34; ubiquitin-conjugating enzyme E2 R1 isoform X1 [KO:K02207] [EC:2.3.2.23]
109562016  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
109562020  UBE2B; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
109562057  CDC23; cell division cycle protein 23 homolog [KO:K03355]
109562083  UBE2D2; ubiquitin-conjugating enzyme E2 D2 isoform X1 [KO:K06689] [EC:2.3.2.23]
109562550  [KO:K07868]
109562843  KLHL9; kelch-like protein 9 [KO:K10447]
109563120  [KO:K07868]
109563121  [KO:K07868]
109563178  UBE2R2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
109563362  AIRE; autoimmune regulator [KO:K10603]
109563364  CDC26; anaphase-promoting complex subunit CDC26 [KO:K03359]
109563397  TRIM32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
109563481  [KO:K25228]
109563913  UBE2J1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
109564101  PARK2; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
109564711  PIAS1; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
109564983  HERC2; E3 ubiquitin-protein ligase HERC2 isoform X1 [KO:K10595] [EC:2.3.2.26]
109565053  HERC1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
109565102  NEDD4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
109565520  BIRC6; LOW QUALITY PROTEIN: baculoviral IAP repeat-containing protein 6 [KO:K10586] [EC:2.3.2.23]
109565698  ANAPC1; anaphase-promoting complex subunit 1 isoform X1 [KO:K03348]
109565902  UBE2E3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
109565970  [KO:K03175] [EC:2.3.2.27]
109566084  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
109566096  FANCL; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
109567103  CUL4A; cullin-4A [KO:K10609]
109567112  CDC16; cell division cycle protein 16 homolog [KO:K03353]
109567201  UBOX5; RING finger protein 37 isoform X1 [KO:K10600]
109567383  ITCH; E3 ubiquitin-protein ligase Itchy homolog isoform X1 [KO:K05632] [EC:2.3.2.26]
109567495  UBE2C; ubiquitin-conjugating enzyme E2 C isoform X1 [KO:K06688] [EC:2.3.2.23]
109567657  BIRC7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
109567917  CUL2; cullin-2 [KO:K03870]
109568425  UBR5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
109568764  BIRC3; baculoviral IAP repeat-containing protein 3 [KO:K16060]
109568781  CUL5; cullin-5 [KO:K10612]
109568806  CBL; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
109568926  CBLB; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
109569221  ANAPC15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
109569531  UBE4A; ubiquitin conjugation factor E4 A isoform X1 [KO:K10596] [EC:2.3.2.27]
109569541  DDB2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
109569840  BIRC2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
109569874  UBE2L6; ubiquitin/ISG15-conjugating enzyme E2 L6 [KO:K04553] [EC:2.3.2.23]
109570119  [KO:K10604] [EC:2.3.2.27]
109570416  UBE4B; LOW QUALITY PROTEIN: ubiquitin conjugation factor E4 B [KO:K10597] [EC:2.3.2.27]
109570511  RFWD2; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RFWD2 [KO:K10143] [EC:2.3.2.27]
109570546  FBXO2; F-box only protein 2 [KO:K10099]
109570582  UBE2J2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
109570975  UBE2L3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
109571045  ANAPC10; anaphase-promoting complex subunit 10 [KO:K03357]
109571204  UBC; polyubiquitin-C [KO:K08770]
109571226  UBE3B; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
109571233  FBXW7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
109571290  FBXW8; F-box/WD repeat-containing protein 8 [KO:K10264]
109571330  PPIL2; peptidyl-prolyl cis-trans isomerase-like 2 isoform X1 [KO:K10598] [EC:5.2.1.8]
109571332  ANAPC7; anaphase-promoting complex subunit 7 [KO:K03354]
109571339  CUL3; cullin-3 [KO:K03869]
109571359  ANAPC5; anaphase-promoting complex subunit 5 isoform X1 [KO:K03352]
109571536  TRIP12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
109571630  UBE2M; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
109572481  [KO:K05630] [EC:2.3.2.26]
109572533  UBA2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
109572653  SAE1; SUMO-activating enzyme subunit 1 isoform X1 [KO:K10684] [EC:6.2.1.45]
109572684  SIAH1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
109572739  CBLC; E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
109572919  UBE2S; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
109573166  TRIM37; E3 ubiquitin-protein ligase TRIM37 [KO:K10608] [EC:2.3.2.27]
109573324  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
109573657  UBE2G1; ubiquitin-conjugating enzyme E2 G1 isoform X1 [KO:K10575] [EC:2.3.2.23]
109573698  BRCA1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
109573701  UBE2Z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
109573989  UBE2O; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X1 [KO:K10581] [EC:2.3.2.24]
109574024  CDC27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
109574075  UBB; polyubiquitin-B [KO:K04551]
109574143  ANAPC11; anaphase-promoting complex subunit 11 isoform X1 [KO:K03358]
109574319  SOCS3; suppressor of cytokine signaling 3 [KO:K04696]
109574833  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
109574865  SKP2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
109574884  [KO:K10291]
109574886  [KO:K10291]
109574889  MAP3K1; mitogen-activated protein kinase kinase kinase 1 isoform X1 [KO:K04416] [EC:2.7.11.25]
109575111  [KO:K10587] [EC:2.3.2.26]
109575524  PML; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
109575589  DET1; DET1 homolog [KO:K10571]
109575598  UBE2Q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
109576168  UBA3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
109576184  [KO:K06689] [EC:2.3.2.23]
109576248  VHL; von Hippel-Lindau disease tumor suppressor [KO:K03871]
109576306  UBA7; ubiquitin-like modifier-activating enzyme 7 [KO:K10698] [EC:6.2.1.45]
109576783  [KO:K02927]
109576872  CUL7; cullin-7 [KO:K10613]
109577374  NHLRC1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
109577739  NEDD4L; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
109577794  PIAS2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
109578275  ELOB; transcription elongation factor B polypeptide 2 [KO:K03873]
109578422  MGRN1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
109578592  SMURF1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
109578627  UBE2I; SUMO-conjugating enzyme UBC9 [KO:K10577]
109578851  SOCS1; suppressor of cytokine signaling 1 [KO:K04694]
109579088  [KO:K03875]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
biu03050  Proteasome
KO pathway
ko04120   

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